Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13430

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,062,012	-				+2.1
3,062,093	+				+1.3
3,062,093	+				+2.6
3,062,093	+				+2.5
3,062,093	+				+0.3
3,062,097	-		DDA3937_RS13425	0.10	+2.6
3,062,109	-		DDA3937_RS13425	0.12	+2.2
3,062,127	-		DDA3937_RS13425	0.14	+2.7
3,062,127	-		DDA3937_RS13425	0.14	+1.9
3,062,153	-		DDA3937_RS13425	0.17	+0.5
3,062,210	-		DDA3937_RS13425	0.25	+2.5
3,062,236	+		DDA3937_RS13425	0.28	+3.4
3,062,237	-		DDA3937_RS13425	0.28	+1.7
3,062,237	-		DDA3937_RS13425	0.28	+4.0
3,062,254	+		DDA3937_RS13425	0.30	+4.2
3,062,254	+		DDA3937_RS13425	0.30	+3.0
3,062,348	+		DDA3937_RS13425	0.42	+3.5
3,062,419	+		DDA3937_RS13425	0.51	+3.3
3,062,420	-		DDA3937_RS13425	0.52	+2.4
3,062,420	-		DDA3937_RS13425	0.52	+0.6
3,062,446	+		DDA3937_RS13425	0.55	+2.5
3,062,446	+		DDA3937_RS13425	0.55	+2.6
3,062,446	+		DDA3937_RS13425	0.55	+3.0
3,062,446	+		DDA3937_RS13425	0.55	+3.3
3,062,446	+		DDA3937_RS13425	0.55	+1.2
3,062,446	+		DDA3937_RS13425	0.55	+2.9
3,062,447	-		DDA3937_RS13425	0.55	+2.8
3,062,447	-		DDA3937_RS13425	0.55	+4.0
3,062,447	-		DDA3937_RS13425	0.55	+0.4
3,062,447	-		DDA3937_RS13425	0.55	+2.9
3,062,447	-		DDA3937_RS13425	0.55	+3.4
3,062,447	-		DDA3937_RS13425	0.55	+3.6
3,062,447	-		DDA3937_RS13425	0.55	+2.5
3,062,504	+		DDA3937_RS13425	0.62	+1.2
3,062,505	-		DDA3937_RS13425	0.62	+0.9
3,062,518	+		DDA3937_RS13425	0.64	+3.4
3,062,519	-		DDA3937_RS13425	0.64	+2.5
3,062,519	-		DDA3937_RS13425	0.64	+2.9
3,062,519	-		DDA3937_RS13425	0.64	+2.5
3,062,522	+		DDA3937_RS13425	0.65	+2.5
3,062,522	+		DDA3937_RS13425	0.65	+0.6
3,062,522	+		DDA3937_RS13425	0.65	+2.4
3,062,522	+		DDA3937_RS13425	0.65	+3.2
3,062,522	+		DDA3937_RS13425	0.65	-1.3
3,062,522	+		DDA3937_RS13425	0.65	+2.6
3,062,522	+		DDA3937_RS13425	0.65	+2.7
3,062,523	-		DDA3937_RS13425	0.65	+3.1
3,062,523	-		DDA3937_RS13425	0.65	+2.4
3,062,523	-		DDA3937_RS13425	0.65	+4.4
3,062,523	-		DDA3937_RS13425	0.65	+4.9
3,062,551	+		DDA3937_RS13425	0.68	+4.2
3,062,552	-		DDA3937_RS13425	0.68	+2.9
3,062,552	-		DDA3937_RS13425	0.68	+3.4
3,062,594	-		DDA3937_RS13425	0.74	+3.6
3,062,594	-		DDA3937_RS13425	0.74	+4.6
3,062,603	+		DDA3937_RS13425	0.75	+3.2
3,062,624	-		DDA3937_RS13425	0.78	+2.2
3,062,648	-		DDA3937_RS13425	0.81	+2.8
3,062,730	+				+1.7
3,062,730	+				-0.1
3,062,757	+				-0.8
3,062,758	-				+1.5
3,062,776	+				+0.4
3,062,776	+				+1.2
3,062,826	+				-1.7
3,062,852	+				-1.3
3,062,852	+				+1.2
3,062,878	+				-0.1
3,062,905	+				-0.4
3,062,905	+				-0.1
3,062,905	+				+0.6
3,062,906	-				+0.6
3,062,906	-				-0.1
3,062,906	-				+0.2
3,062,942	+				-0.3
3,062,942	+				+0.2
3,062,956	+				-0.3
3,062,976	+				-2.6
3,062,980	+				+2.7
3,062,980	+				+1.9
3,062,981	-				+4.0
3,063,027	+				+1.1
3,063,027	+				+1.1
3,063,027	+				+2.7
3,063,027	+				+2.1
3,063,028	-				+2.1
3,063,028	-				+2.7
3,063,058	+				+1.3
3,063,058	+				+3.3
3,063,058	+				+2.7
3,063,058	+				+2.8
3,063,058	+				+2.2
3,063,059	-				+2.1
3,063,060	+				+2.8
3,063,061	-				+3.4
3,063,061	-				+2.5
3,063,061	-				+2.5
3,063,061	-				+3.2
3,063,061	-				+3.1
3,063,061	-				+2.2
3,063,061	-				+3.0
3,063,061	-				+4.7
3,063,061	-				+1.9
3,063,061	-				+1.0
3,063,061	-				+4.0
3,063,127	+		DDA3937_RS13430	0.16	+3.2
3,063,127	+		DDA3937_RS13430	0.16	+1.8
3,063,127	+		DDA3937_RS13430	0.16	+2.9
3,063,128	-		DDA3937_RS13430	0.16	+3.4
3,063,128	-		DDA3937_RS13430	0.16	+2.4
3,063,128	-		DDA3937_RS13430	0.16	+1.6
3,063,245	-		DDA3937_RS13430	0.29	-0.5
3,063,245	-		DDA3937_RS13430	0.29	+3.2
3,063,245	-		DDA3937_RS13430	0.29	+3.4
3,063,359	-		DDA3937_RS13430	0.41	+3.0
3,063,363	-		DDA3937_RS13430	0.42	+0.7
3,063,430	+		DDA3937_RS13430	0.49	+2.4
3,063,441	+		DDA3937_RS13430	0.50	+1.4
3,063,441	+		DDA3937_RS13430	0.50	+2.8
3,063,441	+		DDA3937_RS13430	0.50	+0.6
3,063,441	+		DDA3937_RS13430	0.50	+2.3
3,063,441	+		DDA3937_RS13430	0.50	+2.6
3,063,441	+		DDA3937_RS13430	0.50	+2.9
3,063,441	+		DDA3937_RS13430	0.50	+2.0
3,063,441	+		DDA3937_RS13430	0.50	+3.4
3,063,441	+		DDA3937_RS13430	0.50	+2.3
3,063,441	+		DDA3937_RS13430	0.50	+3.7
3,063,441	+		DDA3937_RS13430	0.50	+2.3
3,063,441	+		DDA3937_RS13430	0.50	+2.7
3,063,442	-		DDA3937_RS13430	0.50	+2.4
3,063,442	-		DDA3937_RS13430	0.50	+2.4
3,063,467	-		DDA3937_RS13430	0.53	+2.8
3,063,469	+		DDA3937_RS13430	0.53	+1.7
3,063,469	+		DDA3937_RS13430	0.53	+2.7
3,063,469	+		DDA3937_RS13430	0.53	+3.4
3,063,470	-		DDA3937_RS13430	0.53	+0.0
3,063,508	-		DDA3937_RS13430	0.57	+3.4
3,063,526	+		DDA3937_RS13430	0.59	+2.5
3,063,527	-		DDA3937_RS13430	0.59	+2.2
3,063,607	+		DDA3937_RS13430	0.68	+1.0
3,063,620	+		DDA3937_RS13430	0.69	+1.5
3,063,621	-		DDA3937_RS13430	0.69	+1.8
3,063,683	-		DDA3937_RS13430	0.76	+2.3
3,063,683	-		DDA3937_RS13430	0.76	+1.2
3,063,688	+		DDA3937_RS13430	0.77	+4.2
3,063,720	+		DDA3937_RS13430	0.80	+3.7
3,063,806	-		DDA3937_RS13430	0.89	+5.4
3,063,806	-		DDA3937_RS13430	0.89	+0.4
3,063,806	-		DDA3937_RS13430	0.89	+2.2
3,063,806	-		DDA3937_RS13430	0.89	+2.8
3,063,806	-		DDA3937_RS13430	0.89	+3.1
3,063,869	-				+2.3
3,063,869	-				+2.9
3,063,869	-				+2.6
3,063,884	-				+2.5
3,063,884	-				+1.5
3,063,887	-				+4.1
3,063,887	-				+3.4
3,063,892	+				+2.0
3,063,893	-				+0.7
3,063,905	-				+2.6
3,063,905	-				+3.0
3,063,909	+				+2.0
3,063,909	+				+3.1
3,063,910	-				+2.3
3,063,920	-				+0.9
3,063,920	-				+1.3
3,063,924	+				+0.1
3,063,939	-				-0.1
3,063,942	+				+2.3
3,063,943	-				+3.4
3,063,943	-				+3.4
3,063,988	+				+1.6
3,063,989	-				+2.6
3,064,007	+				+1.9
3,064,007	+				-0.5
3,064,007	+				+3.8
3,064,007	+				+2.6
3,064,007	+				+1.1
3,064,007	+				+4.5
3,064,007	+				+0.7
3,064,008	-				+4.1
3,064,008	-				+3.1
3,064,008	-				+2.9
3,064,008	-				+3.4
3,064,008	-				+1.9
3,064,008	-				+2.9
3,064,008	-				+3.2
3,064,008	-				+3.1
3,064,008	-				+2.2
3,064,008	-				+2.4
3,064,011	-				+3.5
3,064,011	-				+1.2
3,064,011	-				+3.2
3,064,037	+				+0.2
3,064,037	+				+0.2
3,064,063	+				+3.0
3,064,063	+				+1.9
3,064,064	-				+3.8
3,064,064	-				+1.5
3,064,064	-				+2.7
3,064,080	+				+2.2
3,064,080	+				+3.0
3,064,080	+				+2.5
3,064,081	-				+1.6
3,064,169	+		DDA3937_RS13435	0.12	+2.4
3,064,169	+		DDA3937_RS13435	0.12	+2.0
3,064,169	+		DDA3937_RS13435	0.12	+3.7
3,064,169	+		DDA3937_RS13435	0.12	+2.9
3,064,169	+		DDA3937_RS13435	0.12	+0.5
3,064,170	-		DDA3937_RS13435	0.12	+3.3
3,064,170	-		DDA3937_RS13435	0.12	+2.6
3,064,206	+		DDA3937_RS13435	0.14	+2.7
3,064,206	+		DDA3937_RS13435	0.14	+2.4
3,064,207	-		DDA3937_RS13435	0.14	+2.4
3,064,207	-		DDA3937_RS13435	0.14	+2.4
3,064,209	+		DDA3937_RS13435	0.14	+3.2
3,064,209	+		DDA3937_RS13435	0.14	+2.2
3,064,209	+		DDA3937_RS13435	0.14	+2.6
3,064,209	+		DDA3937_RS13435	0.14	+2.9
3,064,209	+		DDA3937_RS13435	0.14	+1.7
3,064,209	+		DDA3937_RS13435	0.14	+1.6
3,064,210	-		DDA3937_RS13435	0.14	+3.0
3,064,210	-		DDA3937_RS13435	0.14	+0.5
3,064,210	-		DDA3937_RS13435	0.14	+2.6
3,064,210	-		DDA3937_RS13435	0.14	+2.2
3,064,327	-		DDA3937_RS13435	0.20	+2.6
3,064,327	-		DDA3937_RS13435	0.20	+3.5
3,064,327	-		DDA3937_RS13435	0.20	+2.9
3,064,327	-		DDA3937_RS13435	0.20	+3.0
3,064,327	-		DDA3937_RS13435	0.20	+3.2
3,064,327	-				+2.3
3,064,327	-		DDA3937_RS13435	0.20	+5.8
3,064,327	-		DDA3937_RS13435	0.20	+2.8
3,064,451	+		DDA3937_RS13435	0.27	+3.5
3,064,451	+		DDA3937_RS13435	0.27	+1.7
3,064,451	+		DDA3937_RS13435	0.27	+3.7
3,064,452	-		DDA3937_RS13435	0.27	+3.4
3,064,506	+		DDA3937_RS13435	0.30	-1.3
3,064,506	+		DDA3937_RS13435	0.30	+1.0
3,064,510	-		DDA3937_RS13435	0.30	+2.5
3,064,535	+		DDA3937_RS13435	0.31	+2.2
3,064,536	+		DDA3937_RS13435	0.31	+3.1
3,064,536	+		DDA3937_RS13435	0.31	+1.6
3,064,536	+		DDA3937_RS13435	0.31	+2.3
3,064,537	-		DDA3937_RS13435	0.31	+3.3
3,064,537	-		DDA3937_RS13435	0.31	+3.4
3,064,538	+		DDA3937_RS13435	0.31	+1.7
3,064,538	+		DDA3937_RS13435	0.31	+4.0
3,064,538	+		DDA3937_RS13435	0.31	+2.8
3,064,538	+		DDA3937_RS13435	0.31	+3.1
3,064,538	+		DDA3937_RS13435	0.31	+1.4
3,064,539	-		DDA3937_RS13435	0.31	+2.4
3,064,539	-		DDA3937_RS13435	0.31	+3.1
3,064,539	-		DDA3937_RS13435	0.31	+3.3
3,064,556	+		DDA3937_RS13435	0.32	+3.6
3,064,556	+		DDA3937_RS13435	0.32	+2.5
3,064,556	+		DDA3937_RS13435	0.32	+3.0
3,064,556	+		DDA3937_RS13435	0.32	+3.7
3,064,556	+		DDA3937_RS13435	0.32	+2.8
3,064,557	-		DDA3937_RS13435	0.32	+2.8
3,064,557	-		DDA3937_RS13435	0.32	+2.1
3,064,593	+		DDA3937_RS13435	0.34	+2.8
3,064,594	-		DDA3937_RS13435	0.34	+2.0
3,064,683	+		DDA3937_RS13435	0.39	+2.8
3,064,683	+		DDA3937_RS13435	0.39	+3.5
3,064,781	+		DDA3937_RS13435	0.44	+2.3
3,064,782	-		DDA3937_RS13435	0.44	+0.4
3,064,793	+		DDA3937_RS13435	0.45	+2.6
3,064,793	+		DDA3937_RS13435	0.45	+3.4
3,064,794	-		DDA3937_RS13435	0.45	+4.0
3,064,798	-		DDA3937_RS13435	0.45	+1.9
3,064,808	+		DDA3937_RS13435	0.45	+0.5
3,064,837	-		DDA3937_RS13435	0.47	+0.3