Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09950

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,248,020	+		DDA3937_RS09945	0.14	+0.3
2,248,047	-		DDA3937_RS09945	0.17	+0.2
2,248,171	+		DDA3937_RS09945	0.30	+1.0
2,248,258	+		DDA3937_RS09945	0.40	-0.3
2,248,300	+		DDA3937_RS09945	0.44	-2.7
2,248,301	-		DDA3937_RS09945	0.44	-1.4
2,248,320	+		DDA3937_RS09945	0.46	+0.1
2,248,532	-		DDA3937_RS09945	0.69	-1.5
2,248,578	-		DDA3937_RS09945	0.74	-1.0
2,248,759	+				-0.1
2,248,760	-				-0.8
2,248,762	-				-1.0
2,248,871	+				-0.6
2,248,871	+				-0.7
2,248,871	+				+1.5
2,248,871	+				-0.1
2,248,872	-				+0.4
2,248,872	-				-2.1
2,248,872	-				+0.1
2,248,872	-				-1.0
2,249,059	-		DDA3937_RS09950	0.15	-0.7
2,249,096	+		DDA3937_RS09950	0.19	-0.1
2,249,096	+		DDA3937_RS09950	0.19	+0.3
2,249,097	-		DDA3937_RS09950	0.19	-0.5
2,249,097	-		DDA3937_RS09950	0.19	-0.7
2,249,141	+		DDA3937_RS09950	0.24	+2.4
2,249,141	+		DDA3937_RS09950	0.24	-0.8
2,249,141	+		DDA3937_RS09950	0.24	+0.1
2,249,141	+		DDA3937_RS09950	0.24	-0.2
2,249,141	+		DDA3937_RS09950	0.24	+0.2
2,249,141	+		DDA3937_RS09950	0.24	-0.2
2,249,142	-		DDA3937_RS09950	0.24	-0.6
2,249,142	-		DDA3937_RS09950	0.24	-0.7
2,249,142	-		DDA3937_RS09950	0.24	+2.5
2,249,142	-		DDA3937_RS09950	0.24	-0.4
2,249,142	-		DDA3937_RS09950	0.24	-2.5
2,249,142	-		DDA3937_RS09950	0.24	+0.5
2,249,144	+		DDA3937_RS09950	0.24	+0.0
2,249,144	+		DDA3937_RS09950	0.24	+0.3
2,249,145	-		DDA3937_RS09950	0.24	-0.0
2,249,256	+		DDA3937_RS09950	0.36	+1.9
2,249,256	+		DDA3937_RS09950	0.36	-0.3
2,249,256	+		DDA3937_RS09950	0.36	-1.5
2,249,256	+		DDA3937_RS09950	0.36	+0.9
2,249,256	+		DDA3937_RS09950	0.36	+0.2
2,249,256	+		DDA3937_RS09950	0.36	-0.4
2,249,257	-		DDA3937_RS09950	0.36	-1.5
2,249,257	-		DDA3937_RS09950	0.36	-0.4
2,249,257	-		DDA3937_RS09950	0.36	-0.0
2,249,257	-		DDA3937_RS09950	0.36	+0.1
2,249,257	-		DDA3937_RS09950	0.36	-1.0
2,249,258	+		DDA3937_RS09950	0.36	-0.6
2,249,258	+		DDA3937_RS09950	0.36	-0.1
2,249,259	-				+1.0
2,249,259	-		DDA3937_RS09950	0.36	+0.0
2,249,259	-		DDA3937_RS09950	0.36	-0.6
2,249,259	-		DDA3937_RS09950	0.36	+0.9
2,249,428	+		DDA3937_RS09950	0.55	-0.2
2,249,428	+		DDA3937_RS09950	0.55	+0.2
2,249,429	-		DDA3937_RS09950	0.55	-0.2
2,249,436	+		DDA3937_RS09950	0.55	-2.2
2,249,437	-		DDA3937_RS09950	0.56	-0.4
2,249,444	-		DDA3937_RS09950	0.56	+0.3
2,249,444	-		DDA3937_RS09950	0.56	+0.2
2,249,453	+		DDA3937_RS09950	0.57	-1.0
2,249,453	+		DDA3937_RS09950	0.57	+3.8
2,249,453	+		DDA3937_RS09950	0.57	+0.5
2,249,466	+		DDA3937_RS09950	0.59	+0.6
2,249,467	-		DDA3937_RS09950	0.59	-0.4
2,249,467	-				+0.6
2,249,467	-		DDA3937_RS09950	0.59	-0.5
2,249,467	-		DDA3937_RS09950	0.59	-0.7
2,249,673	+		DDA3937_RS09950	0.81	-0.4
2,249,673	+		DDA3937_RS09950	0.81	-0.5
2,249,674	-		DDA3937_RS09950	0.81	+0.2
2,249,707	-		DDA3937_RS09950	0.85	-0.8
2,249,774	+				-0.4
2,249,775	-				-2.0
2,249,834	+				-0.0
2,249,834	+				-0.5
2,249,834	+				+0.6
2,249,835	-				+0.3
2,249,861	+				+0.0
2,249,862	-				-0.8
2,249,865	+				-0.2
2,249,865	+				-0.3
2,249,865	+				+0.3
2,249,866	-				-1.3
2,249,868	+				-0.8
2,249,868	+				-1.6
2,249,869	-				+0.3
2,249,869	-				-0.7
2,249,869	-				-0.4
2,249,869	-				-0.7
2,249,872	+				-0.3
2,249,872	+				-1.1
2,249,872	+				-0.8
2,249,873	-				+0.3
2,249,873	-				-2.7
2,249,873	-				-0.7
2,249,873	-				+0.5
2,249,875	+				-0.1
2,249,875	+				-0.9
2,249,875	+				-1.6
2,249,876	-				-0.4
2,249,876	-				-0.2
2,249,876	-				-0.1
2,249,876	-				+0.6
2,249,876	-				-0.0
2,249,934	-		DDA3937_RS09955	0.16	+0.0
2,249,938	-		DDA3937_RS09955	0.17	+0.6
2,249,938	-		DDA3937_RS09955	0.17	-0.7
2,249,938	-		DDA3937_RS09955	0.17	+1.4
2,249,938	-				-0.4
2,249,942	+		DDA3937_RS09955	0.18	-0.8
2,249,942	+		DDA3937_RS09955	0.18	-1.2
2,249,942	+		DDA3937_RS09955	0.18	+0.2
2,249,942	+		DDA3937_RS09955	0.18	+0.0
2,249,942	+		DDA3937_RS09955	0.18	+0.6
2,249,942	+		DDA3937_RS09955	0.18	+0.6
2,249,942	+		DDA3937_RS09955	0.18	-1.8
2,249,942	+		DDA3937_RS09955	0.18	+2.0
2,249,942	+		DDA3937_RS09955	0.18	+1.4
2,249,943	-		DDA3937_RS09955	0.18	-1.2
2,249,943	-		DDA3937_RS09955	0.18	+0.4
2,249,943	-		DDA3937_RS09955	0.18	+0.0
2,249,943	-		DDA3937_RS09955	0.18	-0.1
2,249,943	-		DDA3937_RS09955	0.18	+0.0
2,249,943	-		DDA3937_RS09955	0.18	-0.6
2,249,943	-		DDA3937_RS09955	0.18	-0.8
2,249,943	-		DDA3937_RS09955	0.18	+0.5
2,249,943	-		DDA3937_RS09955	0.18	-1.4
2,249,943	-		DDA3937_RS09955	0.18	-0.8
2,249,946	+		DDA3937_RS09955	0.19	-0.2
2,249,946	+		DDA3937_RS09955	0.19	+1.5
2,249,947	-		DDA3937_RS09955	0.19	-0.5
2,249,947	-		DDA3937_RS09955	0.19	+0.6
2,249,947	-		DDA3937_RS09955	0.19	+0.6
2,249,947	-		DDA3937_RS09955	0.19	+1.0
2,249,956	+		DDA3937_RS09955	0.21	-2.0
2,249,956	+		DDA3937_RS09955	0.21	-1.3
2,249,957	-		DDA3937_RS09955	0.21	+0.7
2,249,957	-		DDA3937_RS09955	0.21	-1.7
2,249,958	+		DDA3937_RS09955	0.22	+0.4
2,249,959	-		DDA3937_RS09955	0.22	-0.7
2,249,959	-		DDA3937_RS09955	0.22	-0.9
2,249,962	+		DDA3937_RS09955	0.23	-0.5
2,249,969	+		DDA3937_RS09955	0.24	+0.0
2,249,984	+		DDA3937_RS09955	0.28	+0.2
2,249,984	+		DDA3937_RS09955	0.28	-0.3
2,249,984	+		DDA3937_RS09955	0.28	-0.3
2,249,984	+		DDA3937_RS09955	0.28	-0.4
2,249,985	-		DDA3937_RS09955	0.28	-2.5
2,250,024	-		DDA3937_RS09955	0.37	-0.4
2,250,088	+		DDA3937_RS09955	0.53	-1.5
2,250,089	-		DDA3937_RS09955	0.53	-2.0
2,250,141	+		DDA3937_RS09955	0.65	+0.2
2,250,141	+		DDA3937_RS09955	0.65	-1.8
2,250,141	+		DDA3937_RS09955	0.65	+0.6
2,250,141	+		DDA3937_RS09955	0.65	+0.1
2,250,141	+		DDA3937_RS09955	0.65	+0.1
2,250,141	+		DDA3937_RS09955	0.65	+0.3
2,250,142	-		DDA3937_RS09955	0.65	-0.7
2,250,142	-		DDA3937_RS09955	0.65	-2.5
2,250,142	-		DDA3937_RS09955	0.65	-0.4
2,250,142	-		DDA3937_RS09955	0.65	+0.5
2,250,166	-		DDA3937_RS09955	0.71	+0.8
2,250,202	+		DDA3937_RS09955	0.80	-0.6
2,250,202	+		DDA3937_RS09955	0.80	+0.6
2,250,202	+		DDA3937_RS09955	0.80	+0.4
2,250,202	+		DDA3937_RS09955	0.80	-1.1
2,250,202	+		DDA3937_RS09955	0.80	+0.2
2,250,202	+		DDA3937_RS09955	0.80	-1.0
2,250,202	+		DDA3937_RS09955	0.80	-0.3
2,250,202	+		DDA3937_RS09955	0.80	-0.4
2,250,202	+		DDA3937_RS09955	0.80	-0.0
2,250,202	+		DDA3937_RS09955	0.80	+0.6
2,250,202	+		DDA3937_RS09955	0.80	+0.3
2,250,203	-		DDA3937_RS09955	0.80	+0.6
2,250,203	-		DDA3937_RS09955	0.80	-2.5
2,250,203	-		DDA3937_RS09955	0.80	-0.4
2,250,203	-		DDA3937_RS09955	0.80	-0.3
2,250,203	-		DDA3937_RS09955	0.80	-1.0
2,250,203	-		DDA3937_RS09955	0.80	-1.3
2,250,203	-		DDA3937_RS09955	0.80	-1.6
2,250,203	-		DDA3937_RS09955	0.80	-0.8
2,250,204	+		DDA3937_RS09955	0.80	-1.0
2,250,204	+		DDA3937_RS09955	0.80	-0.5
2,250,204	+		DDA3937_RS09955	0.80	+2.0
2,250,204	+		DDA3937_RS09955	0.80	-0.7
2,250,204	+		DDA3937_RS09955	0.80	-1.0
2,250,204	+		DDA3937_RS09955	0.80	+0.2
2,250,204	+		DDA3937_RS09955	0.80	+1.0
2,250,204	+		DDA3937_RS09955	0.80	-1.7
2,250,205	-		DDA3937_RS09955	0.80	-0.2
2,250,205	-		DDA3937_RS09955	0.80	+1.4
2,250,205	-		DDA3937_RS09955	0.80	-0.7
2,250,205	-		DDA3937_RS09955	0.80	-0.4
2,250,205	-		DDA3937_RS09955	0.80	+1.2
2,250,205	-		DDA3937_RS09955	0.80	+2.4
2,250,206	+		DDA3937_RS09955	0.81	-0.2
2,250,206	+		DDA3937_RS09955	0.81	+0.4
2,250,207	-		DDA3937_RS09955	0.81	-1.3
2,250,286	+				-0.1
2,250,286	+				-0.1
2,250,287	-				+0.4
2,250,287	-				-1.2
2,250,314	+				+0.9
2,250,315	-				+0.4
2,250,317	+				-0.5
2,250,358	+				+0.3
2,250,358	+				-0.7
2,250,358	+				-1.2
2,250,358	+				-1.7
2,250,359	-				-0.4
2,250,359	-				-1.0
2,250,359	-				-1.8
2,250,359	-				-0.7
2,250,361	+				-0.3
2,250,408	+				-0.6
2,250,408	+				-0.9
2,250,409	-				-0.3
2,250,409	-				-0.9
2,250,409	-				+0.4
2,250,409	-				+0.3
2,250,409	-				-0.1
2,250,412	+				-0.4
2,250,413	-				+1.0
2,250,413	-				+0.2
2,250,413	-				-0.2
2,250,413	-				-0.6
2,250,429	+				+0.1
2,250,438	+				-3.2
2,250,438	+				+0.0
2,250,439	-				-0.4
2,250,439	-				+0.6
2,250,441	+				-1.0
2,250,442	-				-2.1
2,250,458	-				+0.2
2,250,458	-				-0.4
2,250,458	-				-2.0
2,250,513	+		DDA3937_RS09960	0.19	-0.9
2,250,522	+		DDA3937_RS09960	0.21	-1.4
2,250,522	+		DDA3937_RS09960	0.21	+0.3
2,250,522	+		DDA3937_RS09960	0.21	-0.7
2,250,522	+		DDA3937_RS09960	0.21	-2.5
2,250,523	-		DDA3937_RS09960	0.21	+0.2
2,250,523	-		DDA3937_RS09960	0.21	-0.4
2,250,523	-		DDA3937_RS09960	0.21	+1.0
2,250,523	-		DDA3937_RS09960	0.21	-0.6
2,250,523	-		DDA3937_RS09960	0.21	+0.6
2,250,523	-		DDA3937_RS09960	0.21	+0.0
2,250,523	-		DDA3937_RS09960	0.21	-1.3
2,250,555	+		DDA3937_RS09960	0.27	-2.5
2,250,562	-		DDA3937_RS09960	0.29	-0.2
2,250,562	-		DDA3937_RS09960	0.29	+0.1
2,250,646	+		DDA3937_RS09960	0.45	-1.7
2,250,671	+		DDA3937_RS09960	0.50	-1.5
2,250,671	+		DDA3937_RS09960	0.50	+0.3
2,250,672	-		DDA3937_RS09960	0.50	-0.3
2,250,672	-		DDA3937_RS09960	0.50	+1.6
2,250,675	+		DDA3937_RS09960	0.50	-2.0
2,250,675	+		DDA3937_RS09960	0.50	-0.2
2,250,675	+		DDA3937_RS09960	0.50	+2.8
2,250,676	-		DDA3937_RS09960	0.50	+0.6
2,250,713	+		DDA3937_RS09960	0.58	-0.2
2,250,725	+				+0.6
2,250,726	-		DDA3937_RS09960	0.60	-1.7
2,250,732	+		DDA3937_RS09960	0.61	+1.0
2,250,733	-		DDA3937_RS09960	0.61	-0.6
2,250,733	-		DDA3937_RS09960	0.61	-1.0
2,250,744	+		DDA3937_RS09960	0.63	-1.1
2,250,744	+		DDA3937_RS09960	0.63	-1.0
2,250,744	+		DDA3937_RS09960	0.63	+0.8
2,250,745	-				-0.4
2,250,750	-		DDA3937_RS09960	0.65	-2.0
2,250,770	+		DDA3937_RS09960	0.68	+0.4
2,250,771	-		DDA3937_RS09960	0.69	+0.1
2,250,801	+		DDA3937_RS09960	0.74	-0.3
2,250,801	+		DDA3937_RS09960	0.74	-1.5
2,250,802	-		DDA3937_RS09960	0.74	-1.3