Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09635

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,171,682	+		DDA3937_RS09630	0.12	+0.2
2,171,682	+		DDA3937_RS09630	0.12	-0.7
2,171,685	+		DDA3937_RS09630	0.12	-0.5
2,171,685	+		DDA3937_RS09630	0.12	-0.1
2,171,685	+		DDA3937_RS09630	0.12	-0.9
2,171,685	+		DDA3937_RS09630	0.12	-0.4
2,171,685	+		DDA3937_RS09630	0.12	+1.5
2,171,686	-				-1.7
2,171,726	+		DDA3937_RS09630	0.17	+1.3
2,171,726	+		DDA3937_RS09630	0.17	+0.1
2,171,726	+		DDA3937_RS09630	0.17	+0.6
2,171,727	-		DDA3937_RS09630	0.17	-0.2
2,171,778	+		DDA3937_RS09630	0.23	+0.1
2,171,803	+		DDA3937_RS09630	0.26	-1.7
2,171,804	-		DDA3937_RS09630	0.26	-0.2
2,171,804	-		DDA3937_RS09630	0.26	-2.0
2,171,809	-		DDA3937_RS09630	0.26	-0.7
2,171,817	+		DDA3937_RS09630	0.27	-0.4
2,171,817	+		DDA3937_RS09630	0.27	-0.2
2,171,818	-		DDA3937_RS09630	0.27	-0.2
2,171,823	+		DDA3937_RS09630	0.28	-0.6
2,171,823	+		DDA3937_RS09630	0.28	+0.5
2,171,890	+		DDA3937_RS09630	0.36	-0.9
2,171,890	+		DDA3937_RS09630	0.36	-0.2
2,171,890	+		DDA3937_RS09630	0.36	+0.1
2,171,890	+		DDA3937_RS09630	0.36	+0.1
2,171,890	+		DDA3937_RS09630	0.36	-0.9
2,171,890	+		DDA3937_RS09630	0.36	+0.0
2,171,891	-				+0.1
2,171,891	-		DDA3937_RS09630	0.36	+1.6
2,171,891	-		DDA3937_RS09630	0.36	+0.2
2,171,891	-		DDA3937_RS09630	0.36	+0.4
2,171,891	-		DDA3937_RS09630	0.36	-0.5
2,171,891	-		DDA3937_RS09630	0.36	+0.1
2,171,899	-		DDA3937_RS09630	0.37	-1.4
2,171,899	-		DDA3937_RS09630	0.37	-0.8
2,171,910	+		DDA3937_RS09630	0.38	+0.3
2,171,910	+		DDA3937_RS09630	0.38	+1.1
2,171,910	+		DDA3937_RS09630	0.38	-0.7
2,171,910	+		DDA3937_RS09630	0.38	-0.1
2,171,910	+		DDA3937_RS09630	0.38	+1.9
2,171,911	-		DDA3937_RS09630	0.38	-1.9
2,171,911	-		DDA3937_RS09630	0.38	+0.5
2,172,089	+		DDA3937_RS09630	0.58	+0.3
2,172,089	+		DDA3937_RS09630	0.58	-2.1
2,172,089	+		DDA3937_RS09630	0.58	-0.2
2,172,090	-		DDA3937_RS09630	0.58	-0.5
2,172,090	-		DDA3937_RS09630	0.58	+0.5
2,172,090	-		DDA3937_RS09630	0.58	+0.2
2,172,221	+		DDA3937_RS09630	0.73	+0.1
2,172,221	+		DDA3937_RS09630	0.73	+0.1
2,172,221	+		DDA3937_RS09630	0.73	-0.5
2,172,221	+		DDA3937_RS09630	0.73	-0.4
2,172,221	+				+1.4
2,172,221	+		DDA3937_RS09630	0.73	+0.3
2,172,221	+		DDA3937_RS09630	0.73	-1.8
2,172,221	+		DDA3937_RS09630	0.73	-1.7
2,172,221	+				+0.2
2,172,221	+		DDA3937_RS09630	0.73	-0.1
2,172,221	+		DDA3937_RS09630	0.73	-0.0
2,172,221	+		DDA3937_RS09630	0.73	-0.2
2,172,221	+		DDA3937_RS09630	0.73	+2.2
2,172,221	+		DDA3937_RS09630	0.73	+0.4
2,172,222	-		DDA3937_RS09630	0.74	-1.4
2,172,222	-		DDA3937_RS09630	0.74	-0.7
2,172,222	-		DDA3937_RS09630	0.74	+0.3
2,172,222	-		DDA3937_RS09630	0.74	-1.1
2,172,222	-		DDA3937_RS09630	0.74	-0.9
2,172,222	-		DDA3937_RS09630	0.74	-1.5
2,172,222	-		DDA3937_RS09630	0.74	-3.1
2,172,222	-		DDA3937_RS09630	0.74	-1.2
2,172,222	-		DDA3937_RS09630	0.74	+0.3
2,172,222	-		DDA3937_RS09630	0.74	+0.4
2,172,374	+				+1.2
2,172,374	+				+1.6
2,172,374	+				-0.1
2,172,375	-				-1.1
2,172,449	-				+0.3
2,172,457	-				-0.5
2,172,457	-				+0.2
2,172,459	+				+0.8
2,172,459	+				-1.2
2,172,459	+				-0.2
2,172,460	-				-0.2
2,172,460	-				-0.1
2,172,460	-				-0.6
2,172,460	-				+0.2
2,172,460	-				+0.5
2,172,489	+				-0.0
2,172,561	+				-0.2
2,172,562	-				-0.2
2,172,562	-				-1.6
2,172,568	-				+2.6
2,172,701	+		DDA3937_RS09635	0.16	-0.9
2,172,701	+		DDA3937_RS09635	0.16	+0.4
2,172,702	-		DDA3937_RS09635	0.16	+0.4
2,172,702	-		DDA3937_RS09635	0.16	-1.0
2,172,702	-				-2.2
2,172,702	-		DDA3937_RS09635	0.16	-0.1
2,172,702	-		DDA3937_RS09635	0.16	-0.8
2,172,811	-		DDA3937_RS09635	0.28	-1.4
2,172,830	+		DDA3937_RS09635	0.30	+0.3
2,172,892	+		DDA3937_RS09635	0.37	-0.4
2,172,892	+		DDA3937_RS09635	0.37	-1.7
2,172,967	-		DDA3937_RS09635	0.45	-0.1
2,172,987	+		DDA3937_RS09635	0.47	+0.4
2,173,064	-		DDA3937_RS09635	0.56	-0.0
2,173,064	-		DDA3937_RS09635	0.56	-0.5
2,173,113	+		DDA3937_RS09635	0.61	-0.2
2,173,113	+		DDA3937_RS09635	0.61	-0.9
2,173,113	+		DDA3937_RS09635	0.61	+0.9
2,173,113	+		DDA3937_RS09635	0.61	+0.3
2,173,113	+		DDA3937_RS09635	0.61	+0.9
2,173,113	+		DDA3937_RS09635	0.61	+0.3
2,173,113	+		DDA3937_RS09635	0.61	-0.7
2,173,113	+		DDA3937_RS09635	0.61	-3.0
2,173,113	+		DDA3937_RS09635	0.61	+0.1
2,173,114	-		DDA3937_RS09635	0.61	+0.6
2,173,114	-		DDA3937_RS09635	0.61	+0.4
2,173,114	-		DDA3937_RS09635	0.61	-1.4
2,173,114	-		DDA3937_RS09635	0.61	-0.0
2,173,126	+		DDA3937_RS09635	0.63	-0.4
2,173,126	+		DDA3937_RS09635	0.63	+1.3
2,173,126	+		DDA3937_RS09635	0.63	-0.6
2,173,127	-		DDA3937_RS09635	0.63	-1.4
2,173,127	-		DDA3937_RS09635	0.63	-1.3
2,173,127	-		DDA3937_RS09635	0.63	-0.4
2,173,256	+		DDA3937_RS09635	0.77	+0.2
2,173,257	-		DDA3937_RS09635	0.77	-0.6
2,173,274	-		DDA3937_RS09635	0.79	-0.8
2,173,309	-		DDA3937_RS09635	0.83	+0.9
2,173,309	-		DDA3937_RS09635	0.83	+0.0
2,173,328	+		DDA3937_RS09635	0.85	-1.2
2,173,329	-		DDA3937_RS09635	0.85	+0.2
2,173,329	-		DDA3937_RS09635	0.85	+1.4
2,173,329	-		DDA3937_RS09635	0.85	-0.4
2,173,351	+		DDA3937_RS09635	0.87	+2.5
2,173,351	+		DDA3937_RS09635	0.87	+1.5
2,173,351	+		DDA3937_RS09635	0.87	-0.9
2,173,352	-		DDA3937_RS09635	0.88	+0.3
2,173,352	-		DDA3937_RS09635	0.88	+0.8
2,173,352	-				-0.1
2,173,352	-		DDA3937_RS09635	0.88	+0.4
2,173,360	+		DDA3937_RS09635	0.88	+0.2
2,173,360	+		DDA3937_RS09635	0.88	+0.4
2,173,360	+		DDA3937_RS09635	0.88	+0.1
2,173,361	-		DDA3937_RS09635	0.89	-0.0
2,173,487	-				-0.1
2,173,519	+				-1.0
2,173,604	+				+1.0
2,173,605	-				+0.9
2,173,648	+				-0.6
2,173,731	+		DDA3937_RS09640	0.12	+0.9
2,173,732	-		DDA3937_RS09640	0.12	-1.2
2,173,742	+		DDA3937_RS09640	0.13	+0.6
2,173,742	+		DDA3937_RS09640	0.13	-0.2
2,173,743	-		DDA3937_RS09640	0.13	+0.4
2,173,797	-		DDA3937_RS09640	0.18	-1.1
2,173,810	+		DDA3937_RS09640	0.19	-2.0
2,173,811	-		DDA3937_RS09640	0.19	+0.2
2,173,811	-		DDA3937_RS09640	0.19	-2.5
2,173,814	+		DDA3937_RS09640	0.19	+0.4
2,173,814	+		DDA3937_RS09640	0.19	+0.0
2,173,814	+		DDA3937_RS09640	0.19	-0.4
2,173,815	-		DDA3937_RS09640	0.19	-0.4
2,173,815	-		DDA3937_RS09640	0.19	-0.5
2,173,815	-		DDA3937_RS09640	0.19	+1.6
2,173,815	-		DDA3937_RS09640	0.19	+0.5
2,173,817	+		DDA3937_RS09640	0.19	-0.7
2,173,818	-		DDA3937_RS09640	0.19	+0.6
2,173,935	+		DDA3937_RS09640	0.30	+0.0
2,173,936	-		DDA3937_RS09640	0.30	-1.0
2,173,963	+		DDA3937_RS09640	0.32	+0.4
2,173,964	-		DDA3937_RS09640	0.32	+0.5
2,173,997	+		DDA3937_RS09640	0.35	+1.6
2,173,997	+		DDA3937_RS09640	0.35	-1.2
2,173,997	+				+1.6
2,173,997	+		DDA3937_RS09640	0.35	-1.5
2,173,998	-		DDA3937_RS09640	0.35	-0.8
2,173,998	-		DDA3937_RS09640	0.35	+0.8
2,173,998	-		DDA3937_RS09640	0.35	+1.0
2,173,998	-		DDA3937_RS09640	0.35	+0.4
2,174,009	+		DDA3937_RS09640	0.36	+0.8
2,174,009	+		DDA3937_RS09640	0.36	-2.1
2,174,009	+		DDA3937_RS09640	0.36	+1.3
2,174,009	+		DDA3937_RS09640	0.36	+0.6
2,174,009	+		DDA3937_RS09640	0.36	+0.3
2,174,010	-		DDA3937_RS09640	0.36	-1.4
2,174,012	+		DDA3937_RS09640	0.36	+0.9
2,174,012	+		DDA3937_RS09640	0.36	-0.4
2,174,013	-		DDA3937_RS09640	0.36	-0.4
2,174,013	-		DDA3937_RS09640	0.36	-1.4
2,174,013	-		DDA3937_RS09640	0.36	-0.7
2,174,025	+		DDA3937_RS09640	0.37	-0.0
2,174,025	+		DDA3937_RS09640	0.37	+0.2
2,174,025	+		DDA3937_RS09640	0.37	-0.8
2,174,025	+		DDA3937_RS09640	0.37	-0.5
2,174,026	-		DDA3937_RS09640	0.38	+0.1
2,174,026	-		DDA3937_RS09640	0.38	-0.7
2,174,028	+				-1.0
2,174,065	-		DDA3937_RS09640	0.41	+1.2
2,174,065	-		DDA3937_RS09640	0.41	+2.0
2,174,249	+		DDA3937_RS09640	0.57	+1.3
2,174,249	+		DDA3937_RS09640	0.57	-0.2
2,174,249	+		DDA3937_RS09640	0.57	-0.0
2,174,250	-		DDA3937_RS09640	0.57	+0.9
2,174,265	+		DDA3937_RS09640	0.58	+0.4
2,174,266	-		DDA3937_RS09640	0.58	-0.3
2,174,266	-		DDA3937_RS09640	0.58	-1.4
2,174,266	-				+1.6
2,174,267	+		DDA3937_RS09640	0.58	+0.6
2,174,267	+				-0.4
2,174,267	+		DDA3937_RS09640	0.58	-0.4
2,174,267	+		DDA3937_RS09640	0.58	+1.6
2,174,268	-		DDA3937_RS09640	0.59	+0.3
2,174,268	-		DDA3937_RS09640	0.59	-0.1
2,174,296	+		DDA3937_RS09640	0.61	+1.6
2,174,375	+		DDA3937_RS09640	0.68	-1.2
2,174,375	+		DDA3937_RS09640	0.68	+0.2