Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08940

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,018,116	-		DDA3937_RS08935	0.44	-0.4
2,018,116	-		DDA3937_RS08935	0.44	-0.9
2,018,241	+		DDA3937_RS08935	0.52	+0.3
2,018,242	-		DDA3937_RS08935	0.52	-0.9
2,018,242	-		DDA3937_RS08935	0.52	-0.5
2,018,262	+		DDA3937_RS08935	0.53	+2.3
2,018,262	+		DDA3937_RS08935	0.53	-0.6
2,018,262	+		DDA3937_RS08935	0.53	-0.5
2,018,262	+		DDA3937_RS08935	0.53	+0.1
2,018,263	-		DDA3937_RS08935	0.53	+0.7
2,018,263	-		DDA3937_RS08935	0.53	-1.4
2,018,263	-		DDA3937_RS08935	0.53	+0.3
2,018,263	-		DDA3937_RS08935	0.53	-0.6
2,018,263	-		DDA3937_RS08935	0.53	-1.0
2,018,263	-		DDA3937_RS08935	0.53	+0.1
2,018,263	-		DDA3937_RS08935	0.53	+1.1
2,018,263	-		DDA3937_RS08935	0.53	-1.6
2,018,325	+		DDA3937_RS08935	0.57	+0.4
2,018,377	-		DDA3937_RS08935	0.61	+0.2
2,018,401	+		DDA3937_RS08935	0.62	-0.9
2,018,401	+		DDA3937_RS08935	0.62	-0.3
2,018,443	-		DDA3937_RS08935	0.65	-0.4
2,018,448	+		DDA3937_RS08935	0.65	-1.0
2,018,449	-		DDA3937_RS08935	0.65	+0.4
2,018,449	-		DDA3937_RS08935	0.65	-0.4
2,018,473	+		DDA3937_RS08935	0.67	+0.2
2,018,474	-		DDA3937_RS08935	0.67	-0.9
2,018,520	+		DDA3937_RS08935	0.70	+0.0
2,018,521	-		DDA3937_RS08935	0.70	-0.1
2,018,521	-		DDA3937_RS08935	0.70	-0.8
2,018,522	+		DDA3937_RS08935	0.70	+0.6
2,018,523	-		DDA3937_RS08935	0.70	-0.2
2,018,559	+		DDA3937_RS08935	0.72	+0.7
2,018,559	+		DDA3937_RS08935	0.72	+0.1
2,018,559	+		DDA3937_RS08935	0.72	+0.3
2,018,559	+		DDA3937_RS08935	0.72	-2.2
2,018,560	-		DDA3937_RS08935	0.72	-0.2
2,018,560	-		DDA3937_RS08935	0.72	+1.5
2,018,560	-		DDA3937_RS08935	0.72	-0.7
2,018,560	-		DDA3937_RS08935	0.72	-0.3
2,018,560	-		DDA3937_RS08935	0.72	-1.3
2,018,560	-		DDA3937_RS08935	0.72	+0.1
2,018,562	-		DDA3937_RS08935	0.72	-0.8
2,018,682	+		DDA3937_RS08935	0.80	-0.2
2,018,739	+		DDA3937_RS08935	0.84	-1.0
2,018,739	+		DDA3937_RS08935	0.84	-0.2
2,018,740	-		DDA3937_RS08935	0.84	-1.0
2,018,740	-		DDA3937_RS08935	0.84	+0.5
2,018,740	-		DDA3937_RS08935	0.84	-0.3
2,018,745	+		DDA3937_RS08935	0.84	-0.7
2,018,745	+		DDA3937_RS08935	0.84	-0.3
2,018,746	-		DDA3937_RS08935	0.84	+0.4
2,018,746	-		DDA3937_RS08935	0.84	-0.3
2,018,754	+		DDA3937_RS08935	0.85	-0.9
2,018,755	-		DDA3937_RS08935	0.85	+0.9
2,018,755	-		DDA3937_RS08935	0.85	+0.2
2,018,829	+				+1.7
2,018,829	+		DDA3937_RS08935	0.90	-0.9
2,018,829	+		DDA3937_RS08935	0.90	+0.1
2,018,829	+		DDA3937_RS08935	0.90	-0.5
2,018,829	+		DDA3937_RS08935	0.90	-0.3
2,018,829	+		DDA3937_RS08935	0.90	-1.3
2,018,830	-		DDA3937_RS08935	0.90	+0.7
2,018,830	-		DDA3937_RS08935	0.90	+0.5
2,018,830	-		DDA3937_RS08935	0.90	-0.7
2,018,837	+				-1.1
2,018,883	+				+0.5
2,019,034	+				-0.1
2,019,034	+				+1.6
2,019,034	+				-0.2
2,019,035	-				-3.1
2,019,035	-				+1.3
2,019,035	-				-2.0
2,019,054	+				+0.6
2,019,054	+				-1.8
2,019,086	+				-1.1
2,019,092	+				+0.5
2,019,092	+				+1.1
2,019,102	+				+0.8
2,019,108	+				+0.3
2,019,108	+				-1.8
2,019,108	+				+0.9
2,019,108	+				+0.4
2,019,108	+				-0.8
2,019,108	+				+0.7
2,019,108	+				+0.7
2,019,108	+				+0.7
2,019,108	+				+0.4
2,019,108	+				-0.9
2,019,108	+				+0.7
2,019,108	+				+0.7
2,019,108	+				-0.4
2,019,109	-				-0.7
2,019,109	-				-0.7
2,019,109	-				+0.7
2,019,109	-				-0.6
2,019,109	-				-0.0
2,019,109	-				-1.1
2,019,109	-				-1.6
2,019,109	-				-0.3
2,019,167	-				-0.1
2,019,224	+		DDA3937_RS08940	0.12	+0.9
2,019,224	+		DDA3937_RS08940	0.12	+0.2
2,019,224	+		DDA3937_RS08940	0.12	-0.1
2,019,225	-		DDA3937_RS08940	0.12	-0.1
2,019,225	-		DDA3937_RS08940	0.12	+1.7
2,019,225	-		DDA3937_RS08940	0.12	+0.2
2,019,282	+		DDA3937_RS08940	0.18	+0.2
2,019,305	+		DDA3937_RS08940	0.20	-0.3
2,019,306	-		DDA3937_RS08940	0.20	+1.7
2,019,347	+		DDA3937_RS08940	0.25	-0.6
2,019,521	+		DDA3937_RS08940	0.43	+0.6
2,019,521	+		DDA3937_RS08940	0.43	-2.8
2,019,521	+		DDA3937_RS08940	0.43	+0.2
2,019,521	+		DDA3937_RS08940	0.43	-1.3
2,019,522	-		DDA3937_RS08940	0.43	-0.7
2,019,522	-		DDA3937_RS08940	0.43	-0.3
2,019,589	+		DDA3937_RS08940	0.50	-1.6
2,019,589	+		DDA3937_RS08940	0.50	+0.8
2,019,589	+		DDA3937_RS08940	0.50	-0.6
2,019,589	+		DDA3937_RS08940	0.50	+1.4
2,019,589	+		DDA3937_RS08940	0.50	-1.4
2,019,590	-		DDA3937_RS08940	0.50	+0.7
2,019,590	-		DDA3937_RS08940	0.50	+0.2
2,019,590	-		DDA3937_RS08940	0.50	+0.8
2,019,642	+		DDA3937_RS08940	0.55	-1.9
2,019,642	+		DDA3937_RS08940	0.55	-1.1
2,019,689	+		DDA3937_RS08940	0.60	-1.3
2,019,689	+		DDA3937_RS08940	0.60	+0.3
2,019,690	-		DDA3937_RS08940	0.60	+1.5
2,019,704	+		DDA3937_RS08940	0.62	-0.3
2,019,704	+		DDA3937_RS08940	0.62	+0.1
2,019,704	+		DDA3937_RS08940	0.62	-0.1
2,019,704	+		DDA3937_RS08940	0.62	-0.4
2,019,704	+		DDA3937_RS08940	0.62	-1.4
2,019,705	-		DDA3937_RS08940	0.62	-0.1
2,019,713	+		DDA3937_RS08940	0.63	+0.7
2,019,713	+		DDA3937_RS08940	0.63	+0.7
2,019,713	+		DDA3937_RS08940	0.63	-2.2
2,019,714	-				+0.7
2,019,714	-		DDA3937_RS08940	0.63	-2.9
2,019,714	-		DDA3937_RS08940	0.63	-0.8
2,019,714	-		DDA3937_RS08940	0.63	-0.7
2,019,752	+		DDA3937_RS08940	0.67	-1.8
2,019,753	-		DDA3937_RS08940	0.67	+0.3
2,019,774	-		DDA3937_RS08940	0.69	-1.2
2,019,793	+		DDA3937_RS08940	0.71	-0.3
2,019,793	+		DDA3937_RS08940	0.71	-0.3
2,019,793	+		DDA3937_RS08940	0.71	+1.4
2,019,873	+		DDA3937_RS08940	0.80	-1.2
2,019,881	+		DDA3937_RS08940	0.81	+1.7
2,019,881	+		DDA3937_RS08940	0.81	-0.1
2,019,882	-		DDA3937_RS08940	0.81	-0.3
2,019,882	-		DDA3937_RS08940	0.81	+0.7
2,019,882	-		DDA3937_RS08940	0.81	-1.6
2,019,882	-		DDA3937_RS08940	0.81	+0.5
2,019,882	-		DDA3937_RS08940	0.81	+0.1
2,019,882	-				+2.0
2,019,882	-		DDA3937_RS08940	0.81	+0.3
2,019,954	-		DDA3937_RS08940	0.88	-1.1
2,020,023	+				-0.3
2,020,023	+				+0.3
2,020,023	+				-2.9
2,020,023	+				+1.0
2,020,023	+				+0.7
2,020,023	+				-0.1
2,020,024	-				-1.6
2,020,024	-				-0.3
2,020,024	-				-0.1
2,020,024	-				+0.7
2,020,024	-				-2.1
2,020,024	-				-0.7
2,020,028	+				-0.6
2,020,064	+				-0.8
2,020,064	+				-0.6
2,020,064	+				+0.4
2,020,064	+				-1.3
2,020,064	+				+0.6
2,020,064	+				-0.2
2,020,065	-				-1.1
2,020,065	-				-0.1
2,020,065	-				+0.7
2,020,065	-				-0.4
2,020,265	-		DDA3937_RS08945	0.23	-0.1
2,020,282	-		DDA3937_RS08945	0.25	-0.0
2,020,381	+		DDA3937_RS08945	0.37	+0.1
2,020,382	-		DDA3937_RS08945	0.37	-0.3
2,020,425	+		DDA3937_RS08945	0.42	-0.3
2,020,426	-		DDA3937_RS08945	0.42	-1.6
2,020,475	-		DDA3937_RS08945	0.48	-0.5
2,020,475	-		DDA3937_RS08945	0.48	+0.7
2,020,479	+		DDA3937_RS08945	0.48	-0.2
2,020,500	+		DDA3937_RS08945	0.51	-1.1
2,020,501	-		DDA3937_RS08945	0.51	+0.4
2,020,501	-		DDA3937_RS08945	0.51	+1.6
2,020,582	+		DDA3937_RS08945	0.60	+0.5
2,020,582	+		DDA3937_RS08945	0.60	-1.1
2,020,582	+				-0.0
2,020,583	-		DDA3937_RS08945	0.60	-3.1
2,020,583	-		DDA3937_RS08945	0.60	-2.0
2,020,583	-		DDA3937_RS08945	0.60	-1.7
2,020,583	-		DDA3937_RS08945	0.60	-0.6
2,020,592	-				+1.3
2,020,592	-		DDA3937_RS08945	0.61	-1.1
2,020,665	+				+0.1
2,020,666	-		DDA3937_RS08945	0.70	-1.0
2,020,768	-		DDA3937_RS08945	0.82	-2.0
2,020,789	+		DDA3937_RS08945	0.85	+0.6
2,020,789	+		DDA3937_RS08945	0.85	-0.3
2,020,789	+		DDA3937_RS08945	0.85	-0.5
2,020,789	+		DDA3937_RS08945	0.85	+0.3
2,020,789	+		DDA3937_RS08945	0.85	+1.9
2,020,789	+		DDA3937_RS08945	0.85	+0.7
2,020,790	-		DDA3937_RS08945	0.85	-1.9
2,020,790	-		DDA3937_RS08945	0.85	-0.8
2,020,790	-		DDA3937_RS08945	0.85	+0.1
2,020,790	-		DDA3937_RS08945	0.85	+0.3
2,020,790	-		DDA3937_RS08945	0.85	+0.7
2,020,790	-		DDA3937_RS08945	0.85	-0.1
2,020,791	+		DDA3937_RS08945	0.85	-0.7
2,020,791	+		DDA3937_RS08945	0.85	+0.6
2,020,858	-				-0.6
2,020,858	-				+0.2
2,020,858	-				+0.0