Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08830

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08825 and DDA3937_RS08830 are separated by 152 nucleotidesDDA3937_RS08830 and DDA3937_RS08835 are separated by 29 nucleotidesDDA3937_RS08835 and DDA3937_RS08840 are separated by 97 nucleotides DDA3937_RS08825: DDA3937_RS08825 - outer membrane protein OmpX, at 1,995,187 to 1,995,702 _RS08825 DDA3937_RS08830: DDA3937_RS08830 - IS4 family transposase, at 1,995,855 to 1,997,171 _RS08830 DDA3937_RS08835: DDA3937_RS08835 - MarR family transcriptional regulator, at 1,997,201 to 1,997,695 _RS08835 DDA3937_RS08840: DDA3937_RS08840 - MFS transporter, at 1,997,793 to 1,998,974 _RS08840 Position (kb) 1995 1996 1997 1998Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1994.862 kb on + strandat 1994.862 kb on + strandat 1994.863 kb on - strandat 1994.863 kb on - strandat 1994.876 kb on - strandat 1994.911 kb on - strandat 1995.137 kb on + strandat 1995.139 kb on + strandat 1995.172 kb on - strandat 1995.183 kb on + strandat 1995.183 kb on + strandat 1995.184 kb on - strandat 1995.186 kb on + strandat 1995.187 kb on - strandat 1995.187 kb on - strandat 1995.269 kb on + strand, within DDA3937_RS08825at 1995.270 kb on - strand, within DDA3937_RS08825at 1995.270 kb on - strand, within DDA3937_RS08825at 1995.281 kb on - strand, within DDA3937_RS08825at 1995.417 kb on + strand, within DDA3937_RS08825at 1995.421 kb on + strand, within DDA3937_RS08825at 1995.421 kb on + strand, within DDA3937_RS08825at 1995.422 kb on - strandat 1995.436 kb on + strand, within DDA3937_RS08825at 1995.437 kb on - strand, within DDA3937_RS08825at 1995.437 kb on - strand, within DDA3937_RS08825at 1995.437 kb on - strand, within DDA3937_RS08825at 1995.437 kb on - strand, within DDA3937_RS08825at 1995.437 kb on - strand, within DDA3937_RS08825at 1995.439 kb on + strand, within DDA3937_RS08825at 1995.490 kb on + strand, within DDA3937_RS08825at 1995.490 kb on + strand, within DDA3937_RS08825at 1995.490 kb on + strand, within DDA3937_RS08825at 1995.491 kb on - strand, within DDA3937_RS08825at 1995.491 kb on - strand, within DDA3937_RS08825at 1995.491 kb on - strand, within DDA3937_RS08825at 1995.517 kb on - strand, within DDA3937_RS08825at 1995.617 kb on + strand, within DDA3937_RS08825at 1995.617 kb on + strand, within DDA3937_RS08825at 1995.665 kb on + strandat 1995.665 kb on + strandat 1995.665 kb on + strandat 1995.666 kb on - strandat 1995.666 kb on - strandat 1995.666 kb on - strandat 1995.686 kb on + strandat 1995.687 kb on - strandat 1995.823 kb on - strandat 1995.860 kb on + strandat 1995.861 kb on - strandat 1995.861 kb on - strandat 1995.861 kb on - strandat 1995.927 kb on - strandat 1995.989 kb on + strand, within DDA3937_RS08830at 1996.211 kb on + strand, within DDA3937_RS08830at 1996.211 kb on + strand, within DDA3937_RS08830at 1996.212 kb on - strand, within DDA3937_RS08830at 1996.212 kb on - strand, within DDA3937_RS08830at 1996.431 kb on + strand, within DDA3937_RS08830at 1996.431 kb on + strand, within DDA3937_RS08830at 1996.432 kb on - strand, within DDA3937_RS08830at 1996.485 kb on + strand, within DDA3937_RS08830at 1996.486 kb on - strand, within DDA3937_RS08830at 1996.501 kb on + strand, within DDA3937_RS08830at 1996.501 kb on + strand, within DDA3937_RS08830at 1996.502 kb on - strand, within DDA3937_RS08830at 1996.509 kb on - strand, within DDA3937_RS08830at 1996.649 kb on + strand, within DDA3937_RS08830at 1996.649 kb on + strand, within DDA3937_RS08830at 1996.649 kb on + strand, within DDA3937_RS08830at 1996.662 kb on + strand, within DDA3937_RS08830at 1996.663 kb on - strand, within DDA3937_RS08830at 1996.681 kb on + strand, within DDA3937_RS08830at 1996.681 kb on + strand, within DDA3937_RS08830at 1996.681 kb on + strand, within DDA3937_RS08830at 1996.681 kb on + strand, within DDA3937_RS08830at 1996.682 kb on - strand, within DDA3937_RS08830at 1996.682 kb on - strand, within DDA3937_RS08830at 1996.707 kb on + strand, within DDA3937_RS08830at 1996.707 kb on + strand, within DDA3937_RS08830at 1996.707 kb on + strand, within DDA3937_RS08830at 1996.708 kb on - strand, within DDA3937_RS08830at 1996.708 kb on - strand, within DDA3937_RS08830at 1996.718 kb on + strand, within DDA3937_RS08830at 1996.718 kb on + strand, within DDA3937_RS08830at 1996.767 kb on + strand, within DDA3937_RS08830at 1996.767 kb on + strand, within DDA3937_RS08830at 1996.767 kb on + strand, within DDA3937_RS08830at 1996.767 kb on + strand, within DDA3937_RS08830at 1996.767 kb on + strand, within DDA3937_RS08830at 1996.768 kb on - strand, within DDA3937_RS08830at 1996.773 kb on + strand, within DDA3937_RS08830at 1996.774 kb on - strand, within DDA3937_RS08830at 1996.791 kb on - strand, within DDA3937_RS08830at 1996.792 kb on + strand, within DDA3937_RS08830at 1996.792 kb on + strand, within DDA3937_RS08830at 1996.792 kb on + strand, within DDA3937_RS08830at 1996.792 kb on + strand, within DDA3937_RS08830at 1996.793 kb on - strand, within DDA3937_RS08830at 1996.793 kb on - strand, within DDA3937_RS08830at 1996.793 kb on - strand, within DDA3937_RS08830at 1996.793 kb on - strand, within DDA3937_RS08830at 1996.873 kb on - strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.902 kb on + strand, within DDA3937_RS08830at 1996.903 kb on - strand, within DDA3937_RS08830at 1996.903 kb on - strand, within DDA3937_RS08830at 1996.903 kb on - strand, within DDA3937_RS08830at 1996.903 kb on - strand, within DDA3937_RS08830at 1996.904 kb on + strand, within DDA3937_RS08830at 1996.904 kb on + strand, within DDA3937_RS08830at 1997.142 kb on + strandat 1997.165 kb on + strandat 1997.165 kb on + strandat 1997.166 kb on - strandat 1997.166 kb on - strandat 1997.166 kb on - strandat 1997.166 kb on - strandat 1997.166 kb on - strandat 1997.302 kb on + strand, within DDA3937_RS08835at 1997.302 kb on + strand, within DDA3937_RS08835at 1997.302 kb on + strand, within DDA3937_RS08835at 1997.303 kb on - strand, within DDA3937_RS08835at 1997.303 kb on - strand, within DDA3937_RS08835at 1997.303 kb on - strand, within DDA3937_RS08835at 1997.306 kb on + strand, within DDA3937_RS08835at 1997.307 kb on - strand, within DDA3937_RS08835at 1997.321 kb on - strand, within DDA3937_RS08835at 1997.466 kb on + strand, within DDA3937_RS08835at 1997.466 kb on + strand, within DDA3937_RS08835at 1997.466 kb on + strand, within DDA3937_RS08835at 1997.466 kb on + strand, within DDA3937_RS08835at 1997.467 kb on - strand, within DDA3937_RS08835at 1997.467 kb on - strand, within DDA3937_RS08835at 1997.557 kb on + strand, within DDA3937_RS08835at 1997.561 kb on + strand, within DDA3937_RS08835at 1997.561 kb on + strand, within DDA3937_RS08835at 1997.561 kb on + strand, within DDA3937_RS08835at 1997.561 kb on + strand, within DDA3937_RS08835at 1997.562 kb on - strand, within DDA3937_RS08835at 1997.562 kb on - strand, within DDA3937_RS08835at 1997.562 kb on - strand, within DDA3937_RS08835at 1997.562 kb on - strand, within DDA3937_RS08835at 1997.562 kb on - strand, within DDA3937_RS08835at 1997.562 kb on - strand, within DDA3937_RS08835at 1997.670 kb on + strandat 1997.670 kb on + strandat 1997.671 kb on - strandat 1997.695 kb on + strandat 1997.695 kb on + strandat 1997.696 kb on - strandat 1997.696 kb on - strandat 1997.696 kb on - strandat 1997.702 kb on - strandat 1997.707 kb on - strandat 1997.737 kb on + strandat 1997.782 kb on + strandat 1997.782 kb on + strandat 1997.782 kb on + strandat 1997.783 kb on - strandat 1997.792 kb on + strandat 1997.944 kb on + strand, within DDA3937_RS08840at 1997.944 kb on + strand, within DDA3937_RS08840at 1997.945 kb on - strand, within DDA3937_RS08840at 1997.945 kb on - strand, within DDA3937_RS08840at 1997.945 kb on - strand, within DDA3937_RS08840at 1997.945 kb on - strand, within DDA3937_RS08840at 1997.951 kb on + strand, within DDA3937_RS08840at 1997.988 kb on + strand, within DDA3937_RS08840at 1998.021 kb on + strand, within DDA3937_RS08840at 1998.101 kb on - strand, within DDA3937_RS08840

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,994,862 + +0.7
1,994,862 + -0.6
1,994,863 - -0.0
1,994,863 - -0.4
1,994,876 - -0.3
1,994,911 - -0.1
1,995,137 + -0.1
1,995,139 + -0.7
1,995,172 - +0.7
1,995,183 + +0.1
1,995,183 + +0.4
1,995,184 - -1.6
1,995,186 + +0.2
1,995,187 - +0.4
1,995,187 - -0.5
1,995,269 + DDA3937_RS08825 0.16 +0.9
1,995,270 - DDA3937_RS08825 0.16 -1.9
1,995,270 - DDA3937_RS08825 0.16 -1.1
1,995,281 - DDA3937_RS08825 0.18 +0.1
1,995,417 + DDA3937_RS08825 0.45 -1.3
1,995,421 + DDA3937_RS08825 0.45 -0.1
1,995,421 + DDA3937_RS08825 0.45 +0.8
1,995,422 - +0.7
1,995,436 + DDA3937_RS08825 0.48 -1.6
1,995,437 - DDA3937_RS08825 0.48 +0.4
1,995,437 - DDA3937_RS08825 0.48 +0.3
1,995,437 - DDA3937_RS08825 0.48 -0.6
1,995,437 - DDA3937_RS08825 0.48 +0.7
1,995,437 - DDA3937_RS08825 0.48 +0.3
1,995,439 + DDA3937_RS08825 0.49 +0.9
1,995,490 + DDA3937_RS08825 0.59 +2.0
1,995,490 + DDA3937_RS08825 0.59 +0.5
1,995,490 + DDA3937_RS08825 0.59 +0.5
1,995,491 - DDA3937_RS08825 0.59 +0.2
1,995,491 - DDA3937_RS08825 0.59 +2.3
1,995,491 - DDA3937_RS08825 0.59 -0.4
1,995,517 - DDA3937_RS08825 0.64 -0.9
1,995,617 + DDA3937_RS08825 0.83 +0.1
1,995,617 + DDA3937_RS08825 0.83 +0.4
1,995,665 + +0.5
1,995,665 + -0.4
1,995,665 + -0.7
1,995,666 - +0.3
1,995,666 - +0.3
1,995,666 - +0.5
1,995,686 + -0.6
1,995,687 - -0.6
1,995,823 - +0.1
1,995,860 + +0.1
1,995,861 - -0.1
1,995,861 - -0.6
1,995,861 - -0.3
1,995,927 - +0.1
1,995,989 + DDA3937_RS08830 0.10 -0.1
1,996,211 + DDA3937_RS08830 0.27 -1.0
1,996,211 + DDA3937_RS08830 0.27 +0.1
1,996,212 - DDA3937_RS08830 0.27 -0.3
1,996,212 - DDA3937_RS08830 0.27 -0.3
1,996,431 + DDA3937_RS08830 0.44 -0.3
1,996,431 + DDA3937_RS08830 0.44 +0.2
1,996,432 - DDA3937_RS08830 0.44 +0.4
1,996,485 + DDA3937_RS08830 0.48 +0.2
1,996,486 - DDA3937_RS08830 0.48 +0.2
1,996,501 + DDA3937_RS08830 0.49 +0.5
1,996,501 + DDA3937_RS08830 0.49 +0.7
1,996,502 - DDA3937_RS08830 0.49 -0.6
1,996,509 - DDA3937_RS08830 0.50 +0.5
1,996,649 + DDA3937_RS08830 0.60 -2.1
1,996,649 + DDA3937_RS08830 0.60 -2.6
1,996,649 + DDA3937_RS08830 0.60 +0.5
1,996,662 + DDA3937_RS08830 0.61 +0.5
1,996,663 - DDA3937_RS08830 0.61 -1.3
1,996,681 + DDA3937_RS08830 0.63 +0.6
1,996,681 + DDA3937_RS08830 0.63 -0.5
1,996,681 + DDA3937_RS08830 0.63 -0.5
1,996,681 + DDA3937_RS08830 0.63 -0.8
1,996,682 - DDA3937_RS08830 0.63 -1.8
1,996,682 - DDA3937_RS08830 0.63 -2.1
1,996,707 + DDA3937_RS08830 0.65 -1.2
1,996,707 + DDA3937_RS08830 0.65 -0.9
1,996,707 + DDA3937_RS08830 0.65 -0.3
1,996,708 - DDA3937_RS08830 0.65 -1.3
1,996,708 - DDA3937_RS08830 0.65 +0.3
1,996,718 + DDA3937_RS08830 0.66 -0.9
1,996,718 + DDA3937_RS08830 0.66 +0.7
1,996,767 + DDA3937_RS08830 0.69 +0.4
1,996,767 + DDA3937_RS08830 0.69 -0.0
1,996,767 + DDA3937_RS08830 0.69 +1.2
1,996,767 + DDA3937_RS08830 0.69 +0.5
1,996,767 + DDA3937_RS08830 0.69 +0.2
1,996,768 - DDA3937_RS08830 0.69 +0.3
1,996,773 + DDA3937_RS08830 0.70 +0.0
1,996,774 - DDA3937_RS08830 0.70 -0.3
1,996,791 - DDA3937_RS08830 0.71 -0.5
1,996,792 + DDA3937_RS08830 0.71 -1.1
1,996,792 + DDA3937_RS08830 0.71 -1.1
1,996,792 + DDA3937_RS08830 0.71 +0.2
1,996,792 + DDA3937_RS08830 0.71 -0.4
1,996,793 - DDA3937_RS08830 0.71 -2.7
1,996,793 - DDA3937_RS08830 0.71 -1.9
1,996,793 - DDA3937_RS08830 0.71 +2.0
1,996,793 - DDA3937_RS08830 0.71 +0.0
1,996,873 - DDA3937_RS08830 0.77 +0.5
1,996,902 + DDA3937_RS08830 0.79 -0.9
1,996,902 + DDA3937_RS08830 0.79 +0.1
1,996,902 + DDA3937_RS08830 0.79 +0.3
1,996,902 + DDA3937_RS08830 0.79 +0.1
1,996,902 + DDA3937_RS08830 0.79 -2.9
1,996,902 + DDA3937_RS08830 0.79 +0.9
1,996,902 + DDA3937_RS08830 0.79 -0.4
1,996,902 + DDA3937_RS08830 0.79 -0.2
1,996,902 + DDA3937_RS08830 0.79 -1.3
1,996,902 + DDA3937_RS08830 0.79 -0.9
1,996,902 + DDA3937_RS08830 0.79 -1.1
1,996,902 + DDA3937_RS08830 0.79 -1.2
1,996,902 + DDA3937_RS08830 0.79 -0.5
1,996,903 - DDA3937_RS08830 0.80 -0.3
1,996,903 - DDA3937_RS08830 0.80 -0.4
1,996,903 - DDA3937_RS08830 0.80 -1.3
1,996,903 - DDA3937_RS08830 0.80 -1.0
1,996,904 + DDA3937_RS08830 0.80 -0.0
1,996,904 + DDA3937_RS08830 0.80 +0.0
1,997,142 + +1.1
1,997,165 + -0.5
1,997,165 + +0.3
1,997,166 - -0.1
1,997,166 - -1.3
1,997,166 - -0.9
1,997,166 - -0.6
1,997,166 - -0.3
1,997,302 + DDA3937_RS08835 0.20 -0.8
1,997,302 + DDA3937_RS08835 0.20 -1.6
1,997,302 + DDA3937_RS08835 0.20 -0.8
1,997,303 - DDA3937_RS08835 0.21 +1.3
1,997,303 - DDA3937_RS08835 0.21 -0.5
1,997,303 - DDA3937_RS08835 0.21 +0.2
1,997,306 + DDA3937_RS08835 0.21 -1.0
1,997,307 - DDA3937_RS08835 0.21 -0.2
1,997,321 - DDA3937_RS08835 0.24 -0.5
1,997,466 + DDA3937_RS08835 0.54 -0.7
1,997,466 + DDA3937_RS08835 0.54 -0.7
1,997,466 + DDA3937_RS08835 0.54 -0.6
1,997,466 + DDA3937_RS08835 0.54 -0.6
1,997,467 - DDA3937_RS08835 0.54 -0.6
1,997,467 - DDA3937_RS08835 0.54 -1.0
1,997,557 + DDA3937_RS08835 0.72 +0.5
1,997,561 + DDA3937_RS08835 0.73 -0.0
1,997,561 + DDA3937_RS08835 0.73 +0.3
1,997,561 + DDA3937_RS08835 0.73 -0.0
1,997,561 + DDA3937_RS08835 0.73 -0.6
1,997,562 - DDA3937_RS08835 0.73 -0.3
1,997,562 - DDA3937_RS08835 0.73 -1.9
1,997,562 - DDA3937_RS08835 0.73 +0.8
1,997,562 - DDA3937_RS08835 0.73 -0.4
1,997,562 - DDA3937_RS08835 0.73 +1.4
1,997,562 - DDA3937_RS08835 0.73 -2.3
1,997,670 + -1.0
1,997,670 + -2.5
1,997,671 - +0.1
1,997,695 + -0.5
1,997,695 + +0.4
1,997,696 - -0.0
1,997,696 - +1.7
1,997,696 - -0.5
1,997,702 - +1.2
1,997,707 - -2.1
1,997,737 + -1.6
1,997,782 + -0.4
1,997,782 + -0.2
1,997,782 + -0.4
1,997,783 - +0.3
1,997,792 + -1.6
1,997,944 + DDA3937_RS08840 0.13 -0.2
1,997,944 + DDA3937_RS08840 0.13 -2.3
1,997,945 - DDA3937_RS08840 0.13 -0.6
1,997,945 - DDA3937_RS08840 0.13 -0.8
1,997,945 - DDA3937_RS08840 0.13 +0.7
1,997,945 - DDA3937_RS08840 0.13 -2.3
1,997,951 + DDA3937_RS08840 0.13 -0.1
1,997,988 + DDA3937_RS08840 0.16 +0.3
1,998,021 + DDA3937_RS08840 0.19 -1.0
1,998,101 - DDA3937_RS08840 0.26 -1.3

Or see this region's nucleotide sequence