Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08500

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,919,134	+		DDA3937_RS08490	0.67	+0.0
1,919,134	+		DDA3937_RS08490	0.67	-0.3
1,919,134	+		DDA3937_RS08490	0.67	-2.2
1,919,134	+		DDA3937_RS08490	0.67	-1.3
1,919,134	+		DDA3937_RS08490	0.67	-0.4
1,919,134	+		DDA3937_RS08490	0.67	-0.3
1,919,134	+		DDA3937_RS08490	0.67	-1.1
1,919,135	-		DDA3937_RS08490	0.67	+0.0
1,919,135	-		DDA3937_RS08490	0.67	-1.8
1,919,136	+		DDA3937_RS08490	0.67	-1.6
1,919,136	+		DDA3937_RS08490	0.67	-3.0
1,919,136	+		DDA3937_RS08490	0.67	-0.4
1,919,137	-		DDA3937_RS08490	0.67	+1.7
1,919,137	-		DDA3937_RS08490	0.67	+0.1
1,919,137	-		DDA3937_RS08490	0.67	-0.7
1,919,212	+		DDA3937_RS08490	0.78	-0.7
1,919,356	+				-0.6
1,919,357	-				+0.4
1,919,357	-				-0.8
1,919,357	-				-0.3
1,919,368	-				-0.4
1,919,437	+		DDA3937_RS08495	0.17	-0.2
1,919,438	-		DDA3937_RS08495	0.18	-1.1
1,919,438	-		DDA3937_RS08495	0.18	+0.6
1,919,438	-		DDA3937_RS08495	0.18	-0.8
1,919,440	-		DDA3937_RS08495	0.18	+0.7
1,919,440	-		DDA3937_RS08495	0.18	+1.2
1,919,520	+		DDA3937_RS08495	0.37	-0.1
1,919,520	+		DDA3937_RS08495	0.37	-0.8
1,919,521	-		DDA3937_RS08495	0.38	+1.2
1,919,521	-		DDA3937_RS08495	0.38	-0.7
1,919,521	-		DDA3937_RS08495	0.38	-0.3
1,919,521	-		DDA3937_RS08495	0.38	+0.2
1,919,521	-		DDA3937_RS08495	0.38	-1.6
1,919,523	+		DDA3937_RS08495	0.38	-1.8
1,919,523	+		DDA3937_RS08495	0.38	-1.0
1,919,523	+		DDA3937_RS08495	0.38	-0.2
1,919,523	+		DDA3937_RS08495	0.38	-0.6
1,919,523	+		DDA3937_RS08495	0.38	-0.1
1,919,523	+		DDA3937_RS08495	0.38	+1.2
1,919,523	+		DDA3937_RS08495	0.38	-0.8
1,919,524	-		DDA3937_RS08495	0.38	-0.5
1,919,524	-		DDA3937_RS08495	0.38	-0.8
1,919,524	-		DDA3937_RS08495	0.38	-0.2
1,919,524	-		DDA3937_RS08495	0.38	+0.2
1,919,524	-		DDA3937_RS08495	0.38	+1.5
1,919,524	-		DDA3937_RS08495	0.38	+0.7
1,919,524	-		DDA3937_RS08495	0.38	-1.2
1,919,524	-		DDA3937_RS08495	0.38	+1.3
1,919,685	-		DDA3937_RS08495	0.78	+1.2
1,919,721	+		DDA3937_RS08495	0.86	+1.6
1,919,721	+		DDA3937_RS08495	0.86	+0.0
1,919,722	-		DDA3937_RS08495	0.87	-1.6
1,919,722	-		DDA3937_RS08495	0.87	-0.9
1,919,746	-				-0.8
1,919,746	-				-0.8
1,919,746	-				-0.3
1,919,746	-				+0.1
1,919,746	-				-0.6
1,919,746	-				-0.3
1,919,767	+				+0.3
1,919,767	+				-1.3
1,919,768	-				-1.8
1,919,770	+				+0.1
1,919,770	+				-0.6
1,919,770	+				+0.0
1,919,770	+				+0.1
1,919,771	-				-0.3
1,919,771	-				+0.7
1,919,777	-				+0.6
1,919,816	+				-0.6
1,919,819	+				-0.5
1,919,819	+				+2.3
1,919,819	+				-0.5
1,919,819	+				-0.4
1,919,820	-				-1.8
1,919,962	-				+0.3
1,919,973	-				-1.6
1,920,044	+				+1.1
1,920,044	+				-0.0
1,920,044	+				-1.1
1,920,045	-				-0.7
1,920,156	+		DDA3937_RS08500	0.12	-0.4
1,920,157	-		DDA3937_RS08500	0.12	+0.5
1,920,158	+		DDA3937_RS08500	0.12	-0.7
1,920,158	+		DDA3937_RS08500	0.12	-1.6
1,920,159	-		DDA3937_RS08500	0.12	-0.8
1,920,159	-		DDA3937_RS08500	0.12	-1.2
1,920,159	-		DDA3937_RS08500	0.12	-1.1
1,920,159	-		DDA3937_RS08500	0.12	+1.1
1,920,209	+		DDA3937_RS08500	0.14	-0.2
1,920,209	+		DDA3937_RS08500	0.14	-0.6
1,920,210	-		DDA3937_RS08500	0.15	+0.2
1,920,442	+		DDA3937_RS08500	0.26	-1.0
1,920,442	+		DDA3937_RS08500	0.26	-0.6
1,920,443	-		DDA3937_RS08500	0.26	+0.3
1,920,528	-		DDA3937_RS08500	0.31	-1.1
1,920,570	+		DDA3937_RS08500	0.33	-0.4
1,920,570	+				+2.1
1,920,585	+		DDA3937_RS08500	0.33	+1.2
1,920,650	-		DDA3937_RS08500	0.37	+1.3
1,920,837	-		DDA3937_RS08500	0.46	+0.7
1,920,935	+		DDA3937_RS08500	0.51	-1.4
1,920,935	+		DDA3937_RS08500	0.51	+0.2
1,920,935	+		DDA3937_RS08500	0.51	-0.8
1,920,935	+		DDA3937_RS08500	0.51	-1.7
1,920,936	-		DDA3937_RS08500	0.51	-1.3
1,920,936	-		DDA3937_RS08500	0.51	-2.3
1,920,936	-		DDA3937_RS08500	0.51	+1.3
1,920,936	-		DDA3937_RS08500	0.51	-1.1
1,920,936	-		DDA3937_RS08500	0.51	+0.7
1,921,000	+		DDA3937_RS08500	0.54	-0.8
1,921,001	-		DDA3937_RS08500	0.55	-1.0
1,921,018	+		DDA3937_RS08500	0.55	-0.3
1,921,025	+		DDA3937_RS08500	0.56	-1.7
1,921,026	-				+0.2
1,921,026	-		DDA3937_RS08500	0.56	-0.6
1,921,026	-				+1.2
1,921,117	-		DDA3937_RS08500	0.60	-2.1
1,921,151	+		DDA3937_RS08500	0.62	+1.2
1,921,151	+		DDA3937_RS08500	0.62	-0.1
1,921,277	+		DDA3937_RS08500	0.68	-0.9
1,921,277	+		DDA3937_RS08500	0.68	+0.4
1,921,410	+				-1.6
1,921,471	+		DDA3937_RS08500	0.78	-0.5
1,921,471	+		DDA3937_RS08500	0.78	-1.1
1,921,472	-		DDA3937_RS08500	0.78	-1.3
1,921,472	-		DDA3937_RS08500	0.78	+0.1
1,921,472	-		DDA3937_RS08500	0.78	-1.1
1,921,472	-		DDA3937_RS08500	0.78	-1.3
1,921,472	-		DDA3937_RS08500	0.78	+0.7
1,921,472	-		DDA3937_RS08500	0.78	+0.3
1,921,528	-		DDA3937_RS08500	0.81	+0.7
1,921,528	-		DDA3937_RS08500	0.81	+2.2
1,921,580	+		DDA3937_RS08500	0.84	+0.5
1,921,580	+		DDA3937_RS08500	0.84	-1.2
1,921,581	-		DDA3937_RS08500	0.84	-1.3
1,921,662	+		DDA3937_RS08500	0.88	-0.5
1,921,663	-		DDA3937_RS08500	0.88	-0.9
1,921,741	+				+0.4
1,921,742	-				+0.0
1,921,843	+				-0.9
1,921,844	-				+0.1
1,921,844	-				+0.3
1,921,915	-				-0.3
1,921,915	-				-0.3
1,921,915	-				+0.4
1,921,915	-				+0.5
1,921,919	-				+1.9
1,921,919	-				+0.7
1,921,919	-				+0.4
1,921,919	-				+0.0
1,921,919	-				+1.3
1,921,919	-				-0.5
1,921,919	-				-0.1
1,921,919	-				-0.3
1,921,919	-				+1.1
1,921,919	-				+1.1
1,921,919	-				+1.2
1,921,919	-				+0.1
1,921,919	-				+0.7
1,921,919	-				+2.2
1,921,919	-				+0.9
1,921,919	-				-0.4
1,921,919	-				-1.8
1,921,919	-				-0.4
1,921,919	-				+1.4
1,921,919	-				-1.2
1,921,919	-				+0.3
1,921,919	-				-0.1
1,921,919	-				-0.9
1,921,919	-				-1.7
1,921,919	-				+0.1
1,921,919	-				+0.1
1,921,919	-				-1.0
1,921,919	-				-0.1
1,921,919	-				-1.8
1,921,919	-				+0.2
1,921,919	-				+0.2
1,921,919	-				-0.1
1,921,919	-				+1.0
1,921,919	-				-1.0
1,921,921	-				+1.3
1,921,921	-				+0.2
1,921,921	-				+0.2
1,921,923	-				-0.3
1,921,923	-				+0.3
1,921,923	-				-0.4
1,921,923	-				+0.5
1,921,923	-				-1.6
1,921,923	-				-0.5
1,921,932	-				+0.4
1,922,387	+				-0.3
1,922,388	-				-0.3
1,922,418	+				-0.4
1,922,418	+				+0.5
1,922,471	+				-0.2
1,922,526	+				-0.2
1,922,543	+				-0.6
1,922,544	-				-0.7
1,922,558	-				-1.5
1,922,590	+				-0.5
1,922,647	+				-1.6
1,922,647	+				-0.8
1,922,648	-				+0.7
1,922,678	+				-1.6
1,922,731	+				-0.1
1,922,731	+				-1.7
1,922,732	-				-1.4
1,922,732	-				+0.0
1,922,732	-				-0.1
1,922,836	-		DDA3937_RS08505	0.12	-0.3
1,922,840	-		DDA3937_RS08505	0.13	+0.0