Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03725 and DDA3937_RS03730 are separated by 26 nucleotides DDA3937_RS03730 and DDA3937_RS03735 are separated by 24 nucleotides DDA3937_RS03735 and DDA3937_RS03740 are separated by 359 nucleotides
DDA3937_RS03725: DDA3937_RS03725 - 5-dehydro-2-deoxygluconokinase, at 824,238 to 826,223
_RS03725
DDA3937_RS03730: DDA3937_RS03730 - myo-inosose-2 dehydratase, at 826,250 to 827,140
_RS03730
DDA3937_RS03735: DDA3937_RS03735 - 5-deoxy-glucuronate isomerase, at 827,165 to 827,992
_RS03735
DDA3937_RS03740: DDA3937_RS03740 - IS110 family transposase, at 828,352 to 829,341
_RS03740
Position (kb) 827
828 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 826.182 kb on - strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.185 kb on + strand at 826.186 kb on - strand at 826.221 kb on + strand at 826.222 kb on - strand at 826.231 kb on + strand at 826.231 kb on + strand at 826.232 kb on - strand at 826.458 kb on - strand, within DDA3937_RS03730 at 826.643 kb on + strand, within DDA3937_RS03730 at 826.643 kb on + strand, within DDA3937_RS03730 at 826.651 kb on + strand, within DDA3937_RS03730 at 826.652 kb on - strand, within DDA3937_RS03730 at 826.673 kb on + strand, within DDA3937_RS03730 at 826.674 kb on - strand, within DDA3937_RS03730 at 826.704 kb on - strand, within DDA3937_RS03730 at 826.715 kb on - strand, within DDA3937_RS03730 at 826.746 kb on + strand, within DDA3937_RS03730 at 826.747 kb on - strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.807 kb on + strand, within DDA3937_RS03730 at 826.808 kb on - strand at 826.808 kb on - strand, within DDA3937_RS03730 at 826.808 kb on - strand, within DDA3937_RS03730 at 826.808 kb on - strand, within DDA3937_RS03730 at 826.922 kb on + strand, within DDA3937_RS03730 at 826.923 kb on - strand, within DDA3937_RS03730 at 826.923 kb on - strand, within DDA3937_RS03730 at 826.923 kb on - strand, within DDA3937_RS03730 at 827.008 kb on + strand, within DDA3937_RS03730 at 827.021 kb on + strand, within DDA3937_RS03730 at 827.081 kb on + strand at 827.081 kb on + strand at 827.082 kb on - strand at 827.082 kb on - strand at 827.082 kb on - strand at 827.082 kb on - strand at 827.090 kb on - strand at 827.099 kb on - strand at 827.138 kb on + strand at 827.138 kb on + strand at 827.138 kb on + strand at 827.139 kb on - strand at 827.139 kb on - strand at 827.175 kb on + strand at 827.175 kb on + strand at 827.176 kb on - strand at 827.410 kb on + strand, within DDA3937_RS03735 at 827.429 kb on + strand, within DDA3937_RS03735 at 827.429 kb on + strand, within DDA3937_RS03735 at 827.593 kb on + strand, within DDA3937_RS03735 at 827.594 kb on - strand, within DDA3937_RS03735 at 827.594 kb on - strand, within DDA3937_RS03735 at 827.642 kb on + strand, within DDA3937_RS03735 at 827.670 kb on - strand, within DDA3937_RS03735 at 827.714 kb on + strand, within DDA3937_RS03735 at 827.714 kb on + strand, within DDA3937_RS03735 at 827.715 kb on - strand, within DDA3937_RS03735 at 827.715 kb on - strand, within DDA3937_RS03735 at 827.729 kb on + strand, within DDA3937_RS03735 at 827.729 kb on + strand, within DDA3937_RS03735 at 827.730 kb on - strand, within DDA3937_RS03735 at 827.732 kb on + strand, within DDA3937_RS03735 at 827.732 kb on + strand, within DDA3937_RS03735 at 827.733 kb on - strand, within DDA3937_RS03735 at 827.733 kb on - strand, within DDA3937_RS03735 at 827.733 kb on - strand, within DDA3937_RS03735 at 827.777 kb on + strand, within DDA3937_RS03735 at 827.816 kb on + strand, within DDA3937_RS03735 at 827.816 kb on + strand, within DDA3937_RS03735 at 827.816 kb on + strand, within DDA3937_RS03735 at 827.885 kb on + strand, within DDA3937_RS03735 at 827.885 kb on + strand, within DDA3937_RS03735 at 827.885 kb on + strand, within DDA3937_RS03735 at 827.885 kb on + strand, within DDA3937_RS03735 at 827.885 kb on + strand, within DDA3937_RS03735 at 827.885 kb on + strand, within DDA3937_RS03735 at 827.885 kb on + strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.886 kb on - strand, within DDA3937_RS03735 at 827.888 kb on + strand, within DDA3937_RS03735 at 827.888 kb on + strand, within DDA3937_RS03735 at 827.889 kb on - strand, within DDA3937_RS03735 at 827.889 kb on - strand, within DDA3937_RS03735 at 827.889 kb on - strand, within DDA3937_RS03735 at 827.889 kb on - strand, within DDA3937_RS03735 at 827.930 kb on - strand at 827.969 kb on + strand at 827.969 kb on + strand at 827.969 kb on + strand at 827.970 kb on - strand at 827.983 kb on + strand at 827.990 kb on + strand at 828.101 kb on + strand at 828.147 kb on - strand at 828.147 kb on - strand at 828.147 kb on - strand at 828.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 826,182 - -0.8 826,185 + -0.5 826,185 + -0.3 826,185 + -0.6 826,185 + -0.8 826,185 + +0.3 826,186 - +0.9 826,221 + +0.9 826,222 - -0.8 826,231 + -0.9 826,231 + -0.1 826,232 - +0.1 826,458 - DDA3937_RS03730 0.23 -1.6 826,643 + DDA3937_RS03730 0.44 +0.4 826,643 + DDA3937_RS03730 0.44 +0.2 826,651 + DDA3937_RS03730 0.45 -1.2 826,652 - DDA3937_RS03730 0.45 -2.0 826,673 + DDA3937_RS03730 0.47 -1.0 826,674 - DDA3937_RS03730 0.48 +0.6 826,704 - DDA3937_RS03730 0.51 +0.3 826,715 - DDA3937_RS03730 0.52 -1.7 826,746 + DDA3937_RS03730 0.56 -1.3 826,747 - DDA3937_RS03730 0.56 +0.0 826,807 + DDA3937_RS03730 0.63 -0.8 826,807 + DDA3937_RS03730 0.63 +0.8 826,807 + DDA3937_RS03730 0.63 -0.4 826,807 + DDA3937_RS03730 0.63 -2.7 826,808 - +0.1 826,808 - DDA3937_RS03730 0.63 +0.2 826,808 - DDA3937_RS03730 0.63 -0.2 826,808 - DDA3937_RS03730 0.63 +0.3 826,922 + DDA3937_RS03730 0.75 -0.1 826,923 - DDA3937_RS03730 0.76 -0.4 826,923 - DDA3937_RS03730 0.76 +0.3 826,923 - DDA3937_RS03730 0.76 -1.4 827,008 + DDA3937_RS03730 0.85 +0.9 827,021 + DDA3937_RS03730 0.87 -0.5 827,081 + -2.4 827,081 + -0.7 827,082 - -1.4 827,082 - +0.6 827,082 - -0.2 827,082 - -0.3 827,090 - +0.3 827,099 - -0.4 827,138 + -0.9 827,138 + +0.9 827,138 + +1.1 827,139 - +0.6 827,139 - -0.3 827,175 + +1.0 827,175 + -0.1 827,176 - -0.7 827,410 + DDA3937_RS03735 0.30 +1.7 827,429 + DDA3937_RS03735 0.32 -0.8 827,429 + DDA3937_RS03735 0.32 +0.2 827,593 + DDA3937_RS03735 0.52 -0.0 827,594 - DDA3937_RS03735 0.52 +0.1 827,594 - DDA3937_RS03735 0.52 -0.2 827,642 + DDA3937_RS03735 0.58 +0.1 827,670 - DDA3937_RS03735 0.61 -0.9 827,714 + DDA3937_RS03735 0.66 -1.0 827,714 + DDA3937_RS03735 0.66 -0.4 827,715 - DDA3937_RS03735 0.66 -2.8 827,715 - DDA3937_RS03735 0.66 -0.1 827,729 + DDA3937_RS03735 0.68 -1.6 827,729 + DDA3937_RS03735 0.68 -1.1 827,730 - DDA3937_RS03735 0.68 -1.4 827,732 + DDA3937_RS03735 0.68 -1.7 827,732 + DDA3937_RS03735 0.68 -1.7 827,733 - DDA3937_RS03735 0.69 -0.7 827,733 - DDA3937_RS03735 0.69 -0.3 827,733 - DDA3937_RS03735 0.69 -0.6 827,777 + DDA3937_RS03735 0.74 +0.1 827,816 + DDA3937_RS03735 0.79 -1.2 827,816 + DDA3937_RS03735 0.79 -1.6 827,816 + DDA3937_RS03735 0.79 +0.4 827,885 + DDA3937_RS03735 0.87 -0.8 827,885 + DDA3937_RS03735 0.87 -1.2 827,885 + DDA3937_RS03735 0.87 -1.1 827,885 + DDA3937_RS03735 0.87 +1.2 827,885 + DDA3937_RS03735 0.87 -0.9 827,885 + DDA3937_RS03735 0.87 -0.6 827,885 + DDA3937_RS03735 0.87 +1.9 827,886 - DDA3937_RS03735 0.87 -2.2 827,886 - DDA3937_RS03735 0.87 -1.7 827,886 - DDA3937_RS03735 0.87 -1.7 827,886 - DDA3937_RS03735 0.87 +0.1 827,886 - DDA3937_RS03735 0.87 +1.5 827,886 - DDA3937_RS03735 0.87 -0.2 827,886 - DDA3937_RS03735 0.87 +0.7 827,886 - DDA3937_RS03735 0.87 -0.4 827,886 - DDA3937_RS03735 0.87 +0.1 827,888 + DDA3937_RS03735 0.87 -0.9 827,888 + DDA3937_RS03735 0.87 -0.1 827,889 - DDA3937_RS03735 0.87 +0.1 827,889 - DDA3937_RS03735 0.87 +0.0 827,889 - DDA3937_RS03735 0.87 +0.0 827,889 - DDA3937_RS03735 0.87 +0.1 827,930 - +0.1 827,969 + +0.6 827,969 + -1.1 827,969 + -1.6 827,970 - -1.2 827,983 + -0.7 827,990 + -0.1 828,101 + +0.0 828,147 - -1.7 828,147 - -1.0 828,147 - -1.2 828,147 - +0.5
Or see this region's nucleotide sequence