Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03190

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03180 and DDA3937_RS03185 overlap by 32 nucleotidesDDA3937_RS03185 and DDA3937_RS03190 are separated by 146 nucleotidesDDA3937_RS03190 and DDA3937_RS03195 are separated by 37 nucleotides DDA3937_RS03180: DDA3937_RS03180 - ribosomal protein S18-alanine N-acetyltransferase, at 698,591 to 699,034 _RS03180 DDA3937_RS03185: DDA3937_RS03185 - DNA polymerase III subunit psi, at 699,003 to 699,422 _RS03185 DDA3937_RS03190: DDA3937_RS03190 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 699,569 to 700,597 _RS03190 DDA3937_RS03195: DDA3937_RS03195 - aldo/keto reductase, at 700,635 to 701,630 _RS03195 Position (kb) 699 700 701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 698.649 kb on + strand, within DDA3937_RS03180at 698.691 kb on + strand, within DDA3937_RS03180at 698.859 kb on - strand, within DDA3937_RS03180at 698.859 kb on - strand, within DDA3937_RS03180at 698.859 kb on - strand, within DDA3937_RS03180at 698.859 kb on - strand, within DDA3937_RS03180at 698.866 kb on + strand, within DDA3937_RS03180at 698.874 kb on + strand, within DDA3937_RS03180at 698.875 kb on - strand, within DDA3937_RS03180at 698.916 kb on + strand, within DDA3937_RS03180at 699.428 kb on - strandat 699.495 kb on - strandat 699.495 kb on - strandat 699.495 kb on - strandat 699.532 kb on + strandat 699.533 kb on - strandat 699.533 kb on - strandat 699.533 kb on - strandat 699.534 kb on + strandat 699.534 kb on + strandat 699.534 kb on + strandat 699.534 kb on + strandat 699.534 kb on + strandat 699.534 kb on + strandat 699.535 kb on - strandat 699.535 kb on - strandat 699.535 kb on - strandat 699.535 kb on - strandat 699.600 kb on + strandat 699.601 kb on - strandat 699.601 kb on - strandat 699.601 kb on - strandat 699.661 kb on + strandat 699.661 kb on + strandat 699.661 kb on + strandat 699.662 kb on - strandat 699.714 kb on - strand, within DDA3937_RS03190at 699.714 kb on - strand, within DDA3937_RS03190at 699.714 kb on - strand, within DDA3937_RS03190at 699.714 kb on - strand, within DDA3937_RS03190at 699.812 kb on + strand, within DDA3937_RS03190at 699.812 kb on + strand, within DDA3937_RS03190at 699.812 kb on + strand, within DDA3937_RS03190at 699.813 kb on - strand, within DDA3937_RS03190at 699.813 kb on - strand, within DDA3937_RS03190at 699.813 kb on - strand, within DDA3937_RS03190at 699.815 kb on + strand, within DDA3937_RS03190at 699.815 kb on + strand, within DDA3937_RS03190at 699.938 kb on - strand, within DDA3937_RS03190at 700.052 kb on + strand, within DDA3937_RS03190at 700.052 kb on + strand, within DDA3937_RS03190at 700.053 kb on - strand, within DDA3937_RS03190at 700.092 kb on + strand, within DDA3937_RS03190at 700.093 kb on - strand, within DDA3937_RS03190at 700.162 kb on + strand, within DDA3937_RS03190at 700.399 kb on + strand, within DDA3937_RS03190at 700.400 kb on - strand, within DDA3937_RS03190at 700.400 kb on - strand, within DDA3937_RS03190at 700.400 kb on - strand, within DDA3937_RS03190at 700.585 kb on + strandat 700.585 kb on + strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.586 kb on - strandat 700.596 kb on - strandat 700.632 kb on + strandat 700.632 kb on + strandat 700.632 kb on + strandat 700.633 kb on - strandat 700.633 kb on - strandat 700.828 kb on - strand, within DDA3937_RS03195at 701.020 kb on + strand, within DDA3937_RS03195at 701.020 kb on + strand, within DDA3937_RS03195at 701.021 kb on - strand, within DDA3937_RS03195at 701.021 kb on - strand, within DDA3937_RS03195at 701.021 kb on - strand, within DDA3937_RS03195at 701.096 kb on - strand, within DDA3937_RS03195at 701.117 kb on + strand, within DDA3937_RS03195at 701.117 kb on + strand, within DDA3937_RS03195at 701.174 kb on + strand, within DDA3937_RS03195at 701.175 kb on - strand, within DDA3937_RS03195at 701.176 kb on + strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.177 kb on - strand, within DDA3937_RS03195at 701.260 kb on + strand, within DDA3937_RS03195at 701.264 kb on - strand, within DDA3937_RS03195at 701.264 kb on - strand, within DDA3937_RS03195at 701.323 kb on + strand, within DDA3937_RS03195at 701.323 kb on + strand, within DDA3937_RS03195at 701.324 kb on - strand, within DDA3937_RS03195at 701.324 kb on - strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.461 kb on + strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.462 kb on - strand, within DDA3937_RS03195at 701.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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698,649 + DDA3937_RS03180 0.13 +0.5
698,691 + DDA3937_RS03180 0.23 +0.7
698,859 - DDA3937_RS03180 0.60 -1.0
698,859 - DDA3937_RS03180 0.60 +1.0
698,859 - DDA3937_RS03180 0.60 +0.3
698,859 - DDA3937_RS03180 0.60 -0.0
698,866 + DDA3937_RS03180 0.62 -2.6
698,874 + DDA3937_RS03180 0.64 +0.2
698,875 - DDA3937_RS03180 0.64 +0.6
698,916 + DDA3937_RS03180 0.73 +0.4
699,428 - -0.8
699,495 - +0.2
699,495 - +0.2
699,495 - -0.1
699,532 + -0.3
699,533 - -1.1
699,533 - -0.4
699,533 - -1.0
699,534 + +1.3
699,534 + -2.0
699,534 + +0.4
699,534 + -0.1
699,534 + +0.6
699,534 + -1.0
699,535 - -1.4
699,535 - -0.1
699,535 - +0.8
699,535 - +3.4
699,600 + -0.9
699,601 - +1.2
699,601 - +0.1
699,601 - -0.4
699,661 + -0.6
699,661 + +1.3
699,661 + -1.0
699,662 - +0.5
699,714 - DDA3937_RS03190 0.14 +2.2
699,714 - DDA3937_RS03190 0.14 -2.0
699,714 - DDA3937_RS03190 0.14 +3.0
699,714 - DDA3937_RS03190 0.14 +0.7
699,812 + DDA3937_RS03190 0.24 -0.7
699,812 + DDA3937_RS03190 0.24 -1.8
699,812 + DDA3937_RS03190 0.24 +0.0
699,813 - DDA3937_RS03190 0.24 -0.4
699,813 - DDA3937_RS03190 0.24 +1.4
699,813 - DDA3937_RS03190 0.24 -0.4
699,815 + DDA3937_RS03190 0.24 -0.7
699,815 + DDA3937_RS03190 0.24 +0.8
699,938 - DDA3937_RS03190 0.36 -0.8
700,052 + DDA3937_RS03190 0.47 +0.3
700,052 + DDA3937_RS03190 0.47 +0.8
700,053 - DDA3937_RS03190 0.47 +0.7
700,092 + DDA3937_RS03190 0.51 +0.3
700,093 - DDA3937_RS03190 0.51 +0.6
700,162 + DDA3937_RS03190 0.58 +0.3
700,399 + DDA3937_RS03190 0.81 -1.1
700,400 - DDA3937_RS03190 0.81 -0.1
700,400 - DDA3937_RS03190 0.81 +1.9
700,400 - DDA3937_RS03190 0.81 -0.1
700,585 + -1.1
700,585 + +0.4
700,586 - -0.1
700,586 - +0.4
700,586 - -0.8
700,586 - -0.1
700,586 - -0.3
700,596 - -1.4
700,632 + -0.9
700,632 + -3.4
700,632 + +0.3
700,633 - -0.1
700,633 - -1.1
700,828 - DDA3937_RS03195 0.19 -0.0
701,020 + DDA3937_RS03195 0.39 +0.4
701,020 + DDA3937_RS03195 0.39 -0.0
701,021 - DDA3937_RS03195 0.39 -0.4
701,021 - DDA3937_RS03195 0.39 -1.0
701,021 - DDA3937_RS03195 0.39 +0.7
701,096 - DDA3937_RS03195 0.46 +0.6
701,117 + DDA3937_RS03195 0.48 -1.2
701,117 + DDA3937_RS03195 0.48 -3.3
701,174 + DDA3937_RS03195 0.54 +0.0
701,175 - DDA3937_RS03195 0.54 +0.1
701,176 + DDA3937_RS03195 0.54 -0.4
701,177 - DDA3937_RS03195 0.54 +1.4
701,177 - DDA3937_RS03195 0.54 +0.3
701,177 - DDA3937_RS03195 0.54 -1.8
701,177 - DDA3937_RS03195 0.54 +0.7
701,260 + DDA3937_RS03195 0.63 -0.9
701,264 - DDA3937_RS03195 0.63 +1.8
701,264 - DDA3937_RS03195 0.63 +0.5
701,323 + DDA3937_RS03195 0.69 -0.2
701,323 + DDA3937_RS03195 0.69 -0.7
701,324 - DDA3937_RS03195 0.69 -0.5
701,324 - DDA3937_RS03195 0.69 +0.3
701,461 + DDA3937_RS03195 0.83 +0.2
701,461 + DDA3937_RS03195 0.83 -1.0
701,461 + DDA3937_RS03195 0.83 +0.1
701,461 + DDA3937_RS03195 0.83 +0.8
701,461 + DDA3937_RS03195 0.83 -0.5
701,461 + DDA3937_RS03195 0.83 -0.1
701,461 + DDA3937_RS03195 0.83 -0.8
701,462 - DDA3937_RS03195 0.83 +0.2
701,462 - DDA3937_RS03195 0.83 -2.6
701,462 - DDA3937_RS03195 0.83 -0.7
701,462 - DDA3937_RS03195 0.83 -0.5
701,462 - DDA3937_RS03195 0.83 -0.2
701,551 + +0.8

Or see this region's nucleotide sequence