Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23465

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS05370 and DDA3937_RS23465 are separated by 10 nucleotidesDDA3937_RS23465 and DDA3937_RS05375 overlap by 45 nucleotides DDA3937_RS05370: DDA3937_RS05370 - alpha/beta fold hydrolase, at 1,195,752 to 1,196,951 _RS05370 DDA3937_RS23465: DDA3937_RS23465 - hypothetical protein, at 1,196,962 to 1,197,378 _RS23465 DDA3937_RS05375: DDA3937_RS05375 - methionine synthase, at 1,197,334 to 1,198,434 _RS05375 Position (kb) 1196 1197 1198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.966 kb on + strand, within DDA3937_RS05370at 1195.967 kb on - strand, within DDA3937_RS05370at 1195.967 kb on - strand, within DDA3937_RS05370at 1196.130 kb on + strand, within DDA3937_RS05370at 1196.131 kb on - strand, within DDA3937_RS05370at 1196.131 kb on - strand, within DDA3937_RS05370at 1196.249 kb on - strand, within DDA3937_RS05370at 1196.257 kb on - strand, within DDA3937_RS05370at 1196.281 kb on + strand, within DDA3937_RS05370at 1196.438 kb on - strand, within DDA3937_RS05370at 1196.438 kb on - strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.479 kb on + strand, within DDA3937_RS05370at 1196.480 kb on - strand, within DDA3937_RS05370at 1196.480 kb on - strand, within DDA3937_RS05370at 1196.592 kb on + strand, within DDA3937_RS05370at 1196.592 kb on + strand, within DDA3937_RS05370at 1196.592 kb on + strand, within DDA3937_RS05370at 1196.593 kb on - strand, within DDA3937_RS05370at 1196.611 kb on + strand, within DDA3937_RS05370at 1196.611 kb on + strand, within DDA3937_RS05370at 1196.611 kb on + strand, within DDA3937_RS05370at 1196.612 kb on - strand, within DDA3937_RS05370at 1196.612 kb on - strand, within DDA3937_RS05370at 1196.809 kb on + strand, within DDA3937_RS05370at 1196.810 kb on - strand, within DDA3937_RS05370at 1196.963 kb on + strandat 1196.982 kb on + strandat 1196.983 kb on - strandat 1196.983 kb on - strandat 1196.985 kb on + strandat 1196.986 kb on - strandat 1196.993 kb on + strandat 1197.295 kb on + strand, within DDA3937_RS23465at 1197.295 kb on + strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.296 kb on - strand, within DDA3937_RS23465at 1197.314 kb on - strand, within DDA3937_RS23465at 1197.314 kb on - strand, within DDA3937_RS23465at 1197.381 kb on - strandat 1197.381 kb on - strandat 1197.381 kb on - strandat 1197.408 kb on - strandat 1197.647 kb on + strand, within DDA3937_RS05375at 1197.647 kb on + strand, within DDA3937_RS05375at 1197.647 kb on + strand, within DDA3937_RS05375at 1197.648 kb on - strand, within DDA3937_RS05375at 1197.648 kb on - strand, within DDA3937_RS05375at 1197.648 kb on - strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.651 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.688 kb on + strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.689 kb on - strand, within DDA3937_RS05375at 1197.772 kb on + strand, within DDA3937_RS05375at 1197.773 kb on - strand, within DDA3937_RS05375at 1197.773 kb on - strand, within DDA3937_RS05375at 1197.773 kb on - strand, within DDA3937_RS05375at 1197.839 kb on + strand, within DDA3937_RS05375at 1197.840 kb on - strand, within DDA3937_RS05375at 1197.841 kb on + strand, within DDA3937_RS05375at 1197.865 kb on + strand, within DDA3937_RS05375at 1197.987 kb on + strand, within DDA3937_RS05375at 1198.030 kb on - strand, within DDA3937_RS05375at 1198.030 kb on - strand, within DDA3937_RS05375at 1198.047 kb on + strand, within DDA3937_RS05375at 1198.047 kb on + strand, within DDA3937_RS05375at 1198.047 kb on + strand, within DDA3937_RS05375at 1198.047 kb on + strand, within DDA3937_RS05375at 1198.047 kb on + strand, within DDA3937_RS05375at 1198.047 kb on + strand, within DDA3937_RS05375at 1198.047 kb on + strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.048 kb on - strand, within DDA3937_RS05375at 1198.072 kb on - strand, within DDA3937_RS05375at 1198.081 kb on + strand, within DDA3937_RS05375at 1198.081 kb on + strand, within DDA3937_RS05375at 1198.082 kb on - strand, within DDA3937_RS05375at 1198.150 kb on + strand, within DDA3937_RS05375at 1198.150 kb on + strand, within DDA3937_RS05375at 1198.279 kb on - strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.291 kb on + strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.292 kb on - strand, within DDA3937_RS05375at 1198.310 kb on + strand, within DDA3937_RS05375at 1198.310 kb on + strand, within DDA3937_RS05375at 1198.310 kb on + strand, within DDA3937_RS05375at 1198.311 kb on - strand, within DDA3937_RS05375at 1198.311 kb on - strand, within DDA3937_RS05375at 1198.311 kb on - strand, within DDA3937_RS05375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
1,195,966 + DDA3937_RS05370 0.18 +1.0
1,195,966 + DDA3937_RS05370 0.18 +0.7
1,195,966 + DDA3937_RS05370 0.18 +0.6
1,195,966 + DDA3937_RS05370 0.18 +1.9
1,195,966 + DDA3937_RS05370 0.18 -1.4
1,195,967 - DDA3937_RS05370 0.18 +1.2
1,195,967 - DDA3937_RS05370 0.18 +1.3
1,196,130 + DDA3937_RS05370 0.32 -1.7
1,196,131 - DDA3937_RS05370 0.32 +1.1
1,196,131 - DDA3937_RS05370 0.32 -2.5
1,196,249 - DDA3937_RS05370 0.41 -1.9
1,196,257 - DDA3937_RS05370 0.42 -0.3
1,196,281 + DDA3937_RS05370 0.44 +0.2
1,196,438 - DDA3937_RS05370 0.57 +0.2
1,196,438 - DDA3937_RS05370 0.57 +0.4
1,196,479 + DDA3937_RS05370 0.61 -0.6
1,196,479 + DDA3937_RS05370 0.61 -0.4
1,196,479 + DDA3937_RS05370 0.61 -1.4
1,196,479 + DDA3937_RS05370 0.61 -1.8
1,196,480 - DDA3937_RS05370 0.61 +0.3
1,196,480 - DDA3937_RS05370 0.61 +0.0
1,196,592 + DDA3937_RS05370 0.70 -0.3
1,196,592 + DDA3937_RS05370 0.70 +2.2
1,196,592 + DDA3937_RS05370 0.70 -0.8
1,196,593 - DDA3937_RS05370 0.70 +0.3
1,196,611 + DDA3937_RS05370 0.72 -1.1
1,196,611 + DDA3937_RS05370 0.72 -2.2
1,196,611 + DDA3937_RS05370 0.72 +0.3
1,196,612 - DDA3937_RS05370 0.72 -1.6
1,196,612 - DDA3937_RS05370 0.72 +2.6
1,196,809 + DDA3937_RS05370 0.88 +1.1
1,196,810 - DDA3937_RS05370 0.88 +2.1
1,196,963 + -0.1
1,196,982 + +0.4
1,196,983 - +2.5
1,196,983 - -0.1
1,196,985 + +0.1
1,196,986 - -0.1
1,196,993 + -0.9
1,197,295 + DDA3937_RS23465 0.80 -2.7
1,197,295 + DDA3937_RS23465 0.80 -2.0
1,197,296 - DDA3937_RS23465 0.80 -0.7
1,197,296 - DDA3937_RS23465 0.80 -2.2
1,197,296 - DDA3937_RS23465 0.80 -1.5
1,197,296 - DDA3937_RS23465 0.80 -0.4
1,197,314 - DDA3937_RS23465 0.84 +0.9
1,197,314 - DDA3937_RS23465 0.84 -0.8
1,197,381 - +0.2
1,197,381 - +0.4
1,197,381 - -3.2
1,197,408 - -0.9
1,197,647 + DDA3937_RS05375 0.28 -2.3
1,197,647 + DDA3937_RS05375 0.28 -2.6
1,197,647 + DDA3937_RS05375 0.28 -2.6
1,197,648 - DDA3937_RS05375 0.29 +1.1
1,197,648 - DDA3937_RS05375 0.29 -0.1
1,197,648 - DDA3937_RS05375 0.29 -0.4
1,197,651 + DDA3937_RS05375 0.29 -1.8
1,197,651 + DDA3937_RS05375 0.29 +0.7
1,197,651 + DDA3937_RS05375 0.29 +2.8
1,197,651 + DDA3937_RS05375 0.29 +0.1
1,197,651 + DDA3937_RS05375 0.29 -2.2
1,197,651 + DDA3937_RS05375 0.29 -1.7
1,197,651 + DDA3937_RS05375 0.29 -1.3
1,197,688 + DDA3937_RS05375 0.32 -0.9
1,197,688 + DDA3937_RS05375 0.32 -0.2
1,197,688 + DDA3937_RS05375 0.32 -0.9
1,197,688 + DDA3937_RS05375 0.32 -1.4
1,197,688 + DDA3937_RS05375 0.32 -1.0
1,197,688 + DDA3937_RS05375 0.32 -1.9
1,197,689 - DDA3937_RS05375 0.32 +1.7
1,197,689 - DDA3937_RS05375 0.32 -1.5
1,197,689 - DDA3937_RS05375 0.32 -0.8
1,197,689 - DDA3937_RS05375 0.32 -1.4
1,197,772 + DDA3937_RS05375 0.40 -2.2
1,197,773 - DDA3937_RS05375 0.40 -1.9
1,197,773 - DDA3937_RS05375 0.40 +0.6
1,197,773 - DDA3937_RS05375 0.40 +1.2
1,197,839 + DDA3937_RS05375 0.46 +0.2
1,197,840 - DDA3937_RS05375 0.46 -2.6
1,197,841 + DDA3937_RS05375 0.46 +0.4
1,197,865 + DDA3937_RS05375 0.48 +0.3
1,197,987 + DDA3937_RS05375 0.59 +0.7
1,198,030 - DDA3937_RS05375 0.63 -0.7
1,198,030 - DDA3937_RS05375 0.63 +1.5
1,198,047 + DDA3937_RS05375 0.65 -0.0
1,198,047 + DDA3937_RS05375 0.65 -0.8
1,198,047 + DDA3937_RS05375 0.65 -1.7
1,198,047 + DDA3937_RS05375 0.65 -0.1
1,198,047 + DDA3937_RS05375 0.65 +0.7
1,198,047 + DDA3937_RS05375 0.65 +0.6
1,198,047 + DDA3937_RS05375 0.65 -0.8
1,198,048 - DDA3937_RS05375 0.65 -2.5
1,198,048 - DDA3937_RS05375 0.65 -0.6
1,198,048 - DDA3937_RS05375 0.65 +1.1
1,198,048 - DDA3937_RS05375 0.65 +2.1
1,198,048 - DDA3937_RS05375 0.65 -0.9
1,198,048 - DDA3937_RS05375 0.65 -0.3
1,198,048 - DDA3937_RS05375 0.65 -0.3
1,198,048 - DDA3937_RS05375 0.65 +3.1
1,198,048 - DDA3937_RS05375 0.65 -0.4
1,198,072 - DDA3937_RS05375 0.67 +0.9
1,198,081 + DDA3937_RS05375 0.68 -1.1
1,198,081 + DDA3937_RS05375 0.68 -0.1
1,198,082 - DDA3937_RS05375 0.68 +2.9
1,198,150 + DDA3937_RS05375 0.74 -2.9
1,198,150 + DDA3937_RS05375 0.74 -1.7
1,198,279 - DDA3937_RS05375 0.86 +0.3
1,198,291 + DDA3937_RS05375 0.87 -0.7
1,198,291 + DDA3937_RS05375 0.87 -2.5
1,198,291 + DDA3937_RS05375 0.87 -1.3
1,198,291 + DDA3937_RS05375 0.87 -1.4
1,198,291 + DDA3937_RS05375 0.87 +1.0
1,198,291 + DDA3937_RS05375 0.87 -0.5
1,198,291 + DDA3937_RS05375 0.87 +0.7
1,198,291 + DDA3937_RS05375 0.87 -0.7
1,198,292 - DDA3937_RS05375 0.87 -0.4
1,198,292 - DDA3937_RS05375 0.87 -2.0
1,198,292 - DDA3937_RS05375 0.87 +0.3
1,198,292 - DDA3937_RS05375 0.87 -1.4
1,198,292 - DDA3937_RS05375 0.87 -0.9
1,198,292 - DDA3937_RS05375 0.87 +0.2
1,198,292 - DDA3937_RS05375 0.87 -2.4
1,198,292 - DDA3937_RS05375 0.87 -2.8
1,198,292 - DDA3937_RS05375 0.87 -1.4
1,198,310 + DDA3937_RS05375 0.89 +0.9
1,198,310 + DDA3937_RS05375 0.89 -1.5
1,198,310 + DDA3937_RS05375 0.89 -0.7
1,198,311 - DDA3937_RS05375 0.89 +0.9
1,198,311 - DDA3937_RS05375 0.89 -1.3
1,198,311 - DDA3937_RS05375 0.89 -0.9

Or see this region's nucleotide sequence