Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04165 and DDA3937_RS23035 are separated by 366 nucleotides DDA3937_RS23035 and DDA3937_RS23405 are separated by 477 nucleotides DDA3937_RS23405 and DDA3937_RS04180 are separated by 6 nucleotides DDA3937_RS04180 and DDA3937_RS04185 are separated by 53 nucleotides
DDA3937_RS04165: DDA3937_RS04165 - replication endonuclease, at 922,148 to 924,190
_RS04165
DDA3937_RS23035: DDA3937_RS23035 - Fic family protein, at 924,557 to 925,606
_RS23035
DDA3937_RS23405: DDA3937_RS23405 - hypothetical protein, at 926,084 to 926,239
_RS23405
DDA3937_RS04180: DDA3937_RS04180 - ogr/Delta-like zinc finger family protein, at 926,246 to 926,512
_RS04180
DDA3937_RS04185: DDA3937_RS04185 - phage portal protein, at 926,566 to 927,615
_RS04185
Position (kb) 924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 923.569 kb on - strand, within DDA3937_RS04165 at 923.569 kb on - strand, within DDA3937_RS04165 at 923.637 kb on - strand, within DDA3937_RS04165 at 923.662 kb on + strand, within DDA3937_RS04165 at 923.662 kb on + strand, within DDA3937_RS04165 at 923.663 kb on - strand, within DDA3937_RS04165 at 923.729 kb on + strand, within DDA3937_RS04165 at 923.729 kb on + strand, within DDA3937_RS04165 at 923.730 kb on - strand, within DDA3937_RS04165 at 923.730 kb on - strand, within DDA3937_RS04165 at 923.754 kb on + strand, within DDA3937_RS04165 at 923.754 kb on + strand, within DDA3937_RS04165 at 923.790 kb on - strand, within DDA3937_RS04165 at 923.790 kb on - strand at 923.817 kb on - strand, within DDA3937_RS04165 at 923.849 kb on + strand, within DDA3937_RS04165 at 923.849 kb on + strand, within DDA3937_RS04165 at 923.983 kb on + strand, within DDA3937_RS04165 at 923.983 kb on + strand, within DDA3937_RS04165 at 923.984 kb on - strand, within DDA3937_RS04165 at 923.984 kb on - strand, within DDA3937_RS04165 at 923.989 kb on + strand at 923.990 kb on - strand at 924.141 kb on + strand at 924.142 kb on - strand at 924.142 kb on - strand at 924.142 kb on - strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.145 kb on + strand at 924.146 kb on - strand at 924.146 kb on - strand at 924.146 kb on - strand at 924.146 kb on - strand at 924.146 kb on - strand at 924.203 kb on + strand at 924.225 kb on - strand at 924.225 kb on - strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.288 kb on + strand at 924.292 kb on + strand at 924.296 kb on + strand at 924.298 kb on + strand at 924.302 kb on + strand at 924.302 kb on + strand at 924.540 kb on - strand at 924.583 kb on + strand at 924.633 kb on + strand at 924.634 kb on - strand at 924.640 kb on - strand at 924.679 kb on + strand, within DDA3937_RS23035 at 924.742 kb on + strand, within DDA3937_RS23035 at 924.743 kb on - strand, within DDA3937_RS23035 at 924.770 kb on + strand, within DDA3937_RS23035 at 924.783 kb on - strand, within DDA3937_RS23035 at 924.786 kb on - strand, within DDA3937_RS23035 at 924.789 kb on - strand, within DDA3937_RS23035 at 924.789 kb on - strand, within DDA3937_RS23035 at 924.866 kb on + strand, within DDA3937_RS23035 at 924.879 kb on - strand, within DDA3937_RS23035 at 924.893 kb on + strand, within DDA3937_RS23035 at 924.893 kb on + strand, within DDA3937_RS23035 at 924.893 kb on + strand, within DDA3937_RS23035 at 924.894 kb on - strand, within DDA3937_RS23035 at 924.971 kb on + strand, within DDA3937_RS23035 at 924.992 kb on - strand, within DDA3937_RS23035 at 925.032 kb on + strand, within DDA3937_RS23035 at 925.032 kb on + strand, within DDA3937_RS23035 at 925.048 kb on + strand, within DDA3937_RS23035 at 925.102 kb on - strand, within DDA3937_RS23035 at 925.183 kb on + strand, within DDA3937_RS23035 at 925.199 kb on + strand, within DDA3937_RS23035 at 925.200 kb on - strand, within DDA3937_RS23035 at 925.289 kb on - strand, within DDA3937_RS23035 at 925.325 kb on + strand, within DDA3937_RS23035 at 925.346 kb on + strand, within DDA3937_RS23035 at 925.372 kb on + strand, within DDA3937_RS23035 at 925.389 kb on + strand, within DDA3937_RS23035 at 925.398 kb on - strand, within DDA3937_RS23035 at 925.400 kb on - strand, within DDA3937_RS23035 at 925.574 kb on - strand at 925.591 kb on + strand at 925.667 kb on - strand at 925.823 kb on - strand at 925.896 kb on - strand at 925.896 kb on - strand at 925.900 kb on - strand at 925.900 kb on - strand at 925.955 kb on - strand at 926.010 kb on - strand at 926.065 kb on + strand at 926.066 kb on - strand at 926.066 kb on - strand at 926.082 kb on + strand at 926.226 kb on + strand at 926.226 kb on + strand at 926.226 kb on + strand at 926.227 kb on - strand at 926.247 kb on + strand at 926.273 kb on + strand, within DDA3937_RS04180 at 926.273 kb on + strand, within DDA3937_RS04180 at 926.421 kb on + strand, within DDA3937_RS04180 at 926.421 kb on + strand, within DDA3937_RS04180 at 926.422 kb on - strand, within DDA3937_RS04180 at 926.422 kb on - strand, within DDA3937_RS04180 at 926.422 kb on - strand, within DDA3937_RS04180 at 926.513 kb on - strand at 926.513 kb on - strand at 926.531 kb on + strand at 926.532 kb on - strand at 926.558 kb on - strand at 926.586 kb on + strand at 926.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 923,569 - DDA3937_RS04165 0.70 -1.7 923,569 - DDA3937_RS04165 0.70 -0.8 923,637 - DDA3937_RS04165 0.73 +0.5 923,662 + DDA3937_RS04165 0.74 -1.1 923,662 + DDA3937_RS04165 0.74 -0.9 923,663 - DDA3937_RS04165 0.74 -1.7 923,729 + DDA3937_RS04165 0.77 +0.0 923,729 + DDA3937_RS04165 0.77 -0.7 923,730 - DDA3937_RS04165 0.77 -1.0 923,730 - DDA3937_RS04165 0.77 +0.9 923,754 + DDA3937_RS04165 0.79 -0.8 923,754 + DDA3937_RS04165 0.79 -1.8 923,790 - DDA3937_RS04165 0.80 -1.5 923,790 - +0.0 923,817 - DDA3937_RS04165 0.82 +1.0 923,849 + DDA3937_RS04165 0.83 -1.9 923,849 + DDA3937_RS04165 0.83 -0.2 923,983 + DDA3937_RS04165 0.90 -1.9 923,983 + DDA3937_RS04165 0.90 +1.4 923,984 - DDA3937_RS04165 0.90 -2.0 923,984 - DDA3937_RS04165 0.90 -0.8 923,989 + -2.0 923,990 - +1.2 924,141 + +0.9 924,142 - +0.1 924,142 - -1.0 924,142 - -2.7 924,145 + -0.1 924,145 + -1.0 924,145 + -1.0 924,145 + +0.0 924,145 + +0.2 924,145 + +0.0 924,145 + +0.0 924,145 + -2.5 924,145 + +0.1 924,146 - -0.3 924,146 - -0.8 924,146 - +0.2 924,146 - -1.7 924,146 - -0.3 924,203 + -0.3 924,225 - +0.0 924,225 - +0.0 924,288 + +0.2 924,288 + -0.3 924,288 + -1.5 924,288 + -1.7 924,288 + -2.0 924,288 + -0.8 924,288 + -0.4 924,288 + +2.0 924,288 + -1.3 924,292 + -1.3 924,296 + -2.0 924,298 + -0.2 924,302 + -1.8 924,302 + -0.4 924,540 - +3.6 924,583 + -1.7 924,633 + -0.6 924,634 - -2.0 924,640 - +0.0 924,679 + DDA3937_RS23035 0.12 -0.6 924,742 + DDA3937_RS23035 0.18 -0.8 924,743 - DDA3937_RS23035 0.18 -0.8 924,770 + DDA3937_RS23035 0.20 -1.0 924,783 - DDA3937_RS23035 0.22 -0.3 924,786 - DDA3937_RS23035 0.22 -3.1 924,789 - DDA3937_RS23035 0.22 -1.6 924,789 - DDA3937_RS23035 0.22 +0.8 924,866 + DDA3937_RS23035 0.29 -0.6 924,879 - DDA3937_RS23035 0.31 +0.9 924,893 + DDA3937_RS23035 0.32 -1.0 924,893 + DDA3937_RS23035 0.32 -2.0 924,893 + DDA3937_RS23035 0.32 -1.3 924,894 - DDA3937_RS23035 0.32 -2.5 924,971 + DDA3937_RS23035 0.39 -2.2 924,992 - DDA3937_RS23035 0.41 -3.6 925,032 + DDA3937_RS23035 0.45 +0.9 925,032 + DDA3937_RS23035 0.45 -1.6 925,048 + DDA3937_RS23035 0.47 -0.6 925,102 - DDA3937_RS23035 0.52 -1.0 925,183 + DDA3937_RS23035 0.60 -2.2 925,199 + DDA3937_RS23035 0.61 +0.4 925,200 - DDA3937_RS23035 0.61 -0.6 925,289 - DDA3937_RS23035 0.70 +1.0 925,325 + DDA3937_RS23035 0.73 -1.0 925,346 + DDA3937_RS23035 0.75 -1.5 925,372 + DDA3937_RS23035 0.78 +1.4 925,389 + DDA3937_RS23035 0.79 -1.6 925,398 - DDA3937_RS23035 0.80 -2.4 925,400 - DDA3937_RS23035 0.80 -1.0 925,574 - +1.4 925,591 + +1.5 925,667 - +0.2 925,823 - +0.7 925,896 - -1.5 925,896 - +3.0 925,900 - -1.3 925,900 - +0.4 925,955 - -1.2 926,010 - -0.9 926,065 + +0.0 926,066 - -0.3 926,066 - +0.0 926,082 + -0.7 926,226 + +1.2 926,226 + -1.0 926,226 + +0.4 926,227 - +0.0 926,247 + -2.0 926,273 + DDA3937_RS04180 0.10 -2.0 926,273 + DDA3937_RS04180 0.10 +0.4 926,421 + DDA3937_RS04180 0.66 -0.9 926,421 + DDA3937_RS04180 0.66 -1.1 926,422 - DDA3937_RS04180 0.66 +1.3 926,422 - DDA3937_RS04180 0.66 -0.3 926,422 - DDA3937_RS04180 0.66 -3.1 926,513 - +1.1 926,513 - +0.2 926,531 + -2.3 926,532 - -0.3 926,558 - -2.2 926,586 + +0.0 926,586 + -0.2
Or see this region's nucleotide sequence