Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02620 and DDA3937_RS02625 are separated by 205 nucleotides DDA3937_RS02625 and DDA3937_RS21820 are separated by 57 nucleotides DDA3937_RS21820 and DDA3937_RS02630 are separated by 282 nucleotides
DDA3937_RS02620: DDA3937_RS02620 - serine acetyltransferase, at 580,950 to 581,450
_RS02620
DDA3937_RS02625: DDA3937_RS02625 - DUF1778 domain-containing protein, at 581,656 to 581,949
_RS02625
DDA3937_RS21820: DDA3937_RS21820 - GNAT family N-acetyltransferase, at 582,007 to 582,430
_RS21820
DDA3937_RS02630: DDA3937_RS02630 - TIGR04141 family sporadically distributed protein, at 582,713 to 584,452
_RS02630
Position (kb) 582
583 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 581.009 kb on + strand, within DDA3937_RS02620 at 581.021 kb on - strand, within DDA3937_RS02620 at 581.021 kb on - strand, within DDA3937_RS02620 at 581.046 kb on + strand, within DDA3937_RS02620 at 581.103 kb on - strand, within DDA3937_RS02620 at 581.103 kb on - strand, within DDA3937_RS02620 at 581.175 kb on + strand, within DDA3937_RS02620 at 581.189 kb on + strand, within DDA3937_RS02620 at 581.189 kb on + strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.190 kb on - strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.209 kb on + strand, within DDA3937_RS02620 at 581.210 kb on - strand, within DDA3937_RS02620 at 581.210 kb on - strand, within DDA3937_RS02620 at 581.264 kb on - strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.348 kb on + strand, within DDA3937_RS02620 at 581.349 kb on - strand, within DDA3937_RS02620 at 581.349 kb on - strand, within DDA3937_RS02620 at 581.349 kb on - strand, within DDA3937_RS02620 at 581.354 kb on - strand, within DDA3937_RS02620 at 581.365 kb on + strand, within DDA3937_RS02620 at 581.365 kb on + strand, within DDA3937_RS02620 at 581.416 kb on + strand at 581.416 kb on + strand at 581.417 kb on - strand at 581.417 kb on - strand at 581.427 kb on + strand at 581.456 kb on + strand at 581.456 kb on + strand at 581.456 kb on + strand at 581.462 kb on + strand at 581.462 kb on + strand at 581.463 kb on - strand at 581.463 kb on - strand at 581.463 kb on - strand at 581.470 kb on + strand at 581.471 kb on - strand at 581.471 kb on - strand at 581.479 kb on - strand at 581.479 kb on - strand at 581.510 kb on + strand at 581.511 kb on - strand at 581.513 kb on + strand at 581.513 kb on + strand at 581.513 kb on + strand at 581.595 kb on - strand at 581.599 kb on + strand at 581.599 kb on + strand at 581.599 kb on + strand at 581.600 kb on - strand at 581.618 kb on - strand at 581.619 kb on + strand at 581.619 kb on + strand at 581.619 kb on + strand at 581.620 kb on - strand at 581.620 kb on - strand at 581.623 kb on + strand at 581.652 kb on + strand at 581.652 kb on + strand at 581.652 kb on + strand at 581.652 kb on + strand at 581.653 kb on - strand at 581.653 kb on - strand at 581.653 kb on - strand at 581.653 kb on - strand at 581.655 kb on + strand at 581.655 kb on + strand at 581.656 kb on - strand at 581.656 kb on - strand at 581.656 kb on - strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 582.015 kb on + strand at 582.016 kb on - strand at 582.109 kb on + strand, within DDA3937_RS21820 at 582.109 kb on + strand, within DDA3937_RS21820 at 582.109 kb on + strand, within DDA3937_RS21820 at 582.110 kb on - strand, within DDA3937_RS21820 at 582.112 kb on + strand, within DDA3937_RS21820 at 582.112 kb on + strand, within DDA3937_RS21820 at 582.112 kb on + strand at 582.134 kb on + strand, within DDA3937_RS21820 at 582.135 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.273 kb on - strand, within DDA3937_RS21820 at 582.293 kb on - strand, within DDA3937_RS21820 at 582.341 kb on + strand, within DDA3937_RS21820 at 582.341 kb on + strand, within DDA3937_RS21820 at 582.420 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.484 kb on + strand at 582.488 kb on + strand at 582.489 kb on - strand at 582.489 kb on - strand at 582.494 kb on - strand at 582.494 kb on - strand at 582.494 kb on - strand at 582.522 kb on + strand at 582.523 kb on - strand at 582.523 kb on - strand at 582.523 kb on - strand at 582.526 kb on + strand at 582.526 kb on + strand at 582.527 kb on - strand at 582.539 kb on - strand at 582.561 kb on - strand at 582.646 kb on - strand at 582.707 kb on + strand at 582.707 kb on + strand at 582.769 kb on - strand at 582.812 kb on - strand at 582.858 kb on - strand at 582.859 kb on + strand at 582.944 kb on - strand, within DDA3937_RS02630 at 583.127 kb on - strand, within DDA3937_RS02630 at 583.294 kb on + strand, within DDA3937_RS02630 at 583.347 kb on + strand, within DDA3937_RS02630 at 583.367 kb on - strand, within DDA3937_RS02630 at 583.402 kb on + strand, within DDA3937_RS02630
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 581,009 + DDA3937_RS02620 0.12 -0.5 581,021 - DDA3937_RS02620 0.14 -0.6 581,021 - DDA3937_RS02620 0.14 -2.3 581,046 + DDA3937_RS02620 0.19 -0.5 581,103 - DDA3937_RS02620 0.31 +1.8 581,103 - DDA3937_RS02620 0.31 -4.0 581,175 + DDA3937_RS02620 0.45 -0.9 581,189 + DDA3937_RS02620 0.48 -0.3 581,189 + DDA3937_RS02620 0.48 -1.1 581,190 - DDA3937_RS02620 0.48 +0.6 581,190 - DDA3937_RS02620 0.48 -2.3 581,190 - DDA3937_RS02620 0.48 -1.5 581,190 - DDA3937_RS02620 0.48 -2.4 581,190 - DDA3937_RS02620 0.48 +0.1 581,190 - DDA3937_RS02620 0.48 +1.1 581,209 + DDA3937_RS02620 0.52 -3.9 581,209 + DDA3937_RS02620 0.52 -1.5 581,209 + DDA3937_RS02620 0.52 -1.9 581,209 + DDA3937_RS02620 0.52 -0.7 581,210 - DDA3937_RS02620 0.52 +1.1 581,210 - DDA3937_RS02620 0.52 -1.0 581,264 - DDA3937_RS02620 0.63 -2.3 581,348 + DDA3937_RS02620 0.79 +0.1 581,348 + +1.1 581,348 + DDA3937_RS02620 0.79 -0.4 581,348 + DDA3937_RS02620 0.79 -0.7 581,348 + DDA3937_RS02620 0.79 -1.5 581,348 + DDA3937_RS02620 0.79 -2.0 581,348 + DDA3937_RS02620 0.79 -0.5 581,348 + DDA3937_RS02620 0.79 +2.3 581,349 - DDA3937_RS02620 0.80 +2.1 581,349 - DDA3937_RS02620 0.80 +0.1 581,349 - DDA3937_RS02620 0.80 -2.3 581,354 - DDA3937_RS02620 0.81 -1.3 581,365 + DDA3937_RS02620 0.83 -2.6 581,365 + DDA3937_RS02620 0.83 -1.5 581,416 + +1.4 581,416 + -2.6 581,417 - -0.7 581,417 - +1.4 581,427 + +0.1 581,456 + +0.4 581,456 + -0.7 581,456 + -0.7 581,462 + +0.2 581,462 + -1.0 581,463 - -0.5 581,463 - +0.9 581,463 - -0.3 581,470 + +1.3 581,471 - +0.7 581,471 - -1.1 581,479 - -1.5 581,479 - -1.1 581,510 + +1.1 581,511 - -1.8 581,513 + +0.1 581,513 + -2.2 581,513 + -1.7 581,595 - -0.9 581,599 + +0.6 581,599 + -0.5 581,599 + -2.1 581,600 - -2.0 581,618 - +0.2 581,619 + -0.5 581,619 + -2.9 581,619 + -0.4 581,620 - +1.7 581,620 - -0.7 581,623 + -2.0 581,652 + +0.2 581,652 + -0.3 581,652 + -0.7 581,652 + +1.3 581,653 - -0.5 581,653 - -0.8 581,653 - -1.5 581,653 - -1.8 581,655 + -0.7 581,655 + -0.3 581,656 - -2.3 581,656 - -1.3 581,656 - -1.8 581,984 + +0.5 581,984 + -2.2 581,984 + -1.1 581,984 + +0.1 581,984 + -0.0 581,984 + +0.7 581,984 + +1.6 581,985 - +1.2 581,985 - +1.8 581,985 - -1.3 581,987 + -1.2 581,987 + -1.1 581,987 + +0.6 581,987 + -1.6 581,988 - +1.5 581,988 - -1.7 581,988 - -1.5 581,988 - -0.5 581,988 - +0.0 582,015 + +1.4 582,016 - +0.6 582,109 + DDA3937_RS21820 0.24 -0.7 582,109 + DDA3937_RS21820 0.24 -2.1 582,109 + DDA3937_RS21820 0.24 +1.3 582,110 - DDA3937_RS21820 0.24 -0.7 582,112 + DDA3937_RS21820 0.25 -0.0 582,112 + DDA3937_RS21820 0.25 -2.1 582,112 + +0.5 582,134 + DDA3937_RS21820 0.30 -1.2 582,135 - DDA3937_RS21820 0.30 -2.7 582,172 - DDA3937_RS21820 0.39 -1.4 582,172 - DDA3937_RS21820 0.39 -0.2 582,172 - DDA3937_RS21820 0.39 -1.2 582,172 - DDA3937_RS21820 0.39 -2.6 582,272 + DDA3937_RS21820 0.62 -1.4 582,272 + DDA3937_RS21820 0.62 -0.7 582,272 + DDA3937_RS21820 0.62 +0.5 582,273 - DDA3937_RS21820 0.63 -1.6 582,293 - DDA3937_RS21820 0.67 -3.1 582,341 + DDA3937_RS21820 0.79 -2.2 582,341 + DDA3937_RS21820 0.79 -2.4 582,420 + -0.1 582,440 + -1.6 582,440 + +0.1 582,440 + -1.0 582,440 + -0.5 582,441 - -1.6 582,441 - -1.8 582,441 - -2.1 582,441 - -0.6 582,441 - -2.3 582,441 - -0.3 582,484 + +0.1 582,488 + -1.2 582,489 - -1.2 582,489 - -1.6 582,494 - -1.0 582,494 - -1.8 582,494 - -1.6 582,522 + -1.1 582,523 - +0.5 582,523 - +0.1 582,523 - -1.1 582,526 + +2.2 582,526 + -0.4 582,527 - +1.9 582,539 - +0.8 582,561 - -0.8 582,646 - -3.2 582,707 + +0.4 582,707 + -1.2 582,769 - -1.9 582,812 - +1.5 582,858 - -0.5 582,859 + +1.5 582,944 - DDA3937_RS02630 0.13 +0.7 583,127 - DDA3937_RS02630 0.24 +0.1 583,294 + DDA3937_RS02630 0.33 -1.5 583,347 + DDA3937_RS02630 0.36 -0.2 583,367 - DDA3937_RS02630 0.38 -0.7 583,402 + DDA3937_RS02630 0.40 -1.1
Or see this region's nucleotide sequence