Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21435

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,880,155	+				-1.8
4,880,155	+				+0.5
4,880,155	+				+1.1
4,880,155	+				+0.2
4,880,156	-				+1.1
4,880,156	-				+0.4
4,880,156	-				+1.8
4,880,156	-				-1.2
4,880,156	-				-1.3
4,880,184	+				+1.9
4,880,185	-				-0.2
4,880,200	+				-0.9
4,880,200	+				+2.1
4,880,200	+				-0.2
4,880,200	+				-0.9
4,880,200	+				+1.1
4,880,200	+				-3.2
4,880,200	+				+0.7
4,880,200	+				-0.2
4,880,200	+				-2.0
4,880,200	+				-0.3
4,880,200	+				-1.7
4,880,200	+				-2.4
4,880,200	+				-1.3
4,880,200	+				-0.2
4,880,200	+				-0.7
4,880,200	+				-0.3
4,880,201	-				-0.7
4,880,201	-				-1.2
4,880,201	-				-0.9
4,880,202	+				-2.1
4,880,264	+				+0.9
4,880,264	+				-1.5
4,880,265	-				-1.2
4,880,265	-				-2.0
4,880,267	-				-1.6
4,880,334	+				-2.6
4,880,334	+				+0.1
4,880,335	-				-0.5
4,880,373	+				-1.7
4,880,374	-				-0.5
4,880,445	+				-0.7
4,880,446	-				+0.7
4,880,501	+		DDA3937_RS21430	0.11	+0.7
4,880,501	+		DDA3937_RS21430	0.11	-2.3
4,880,501	+		DDA3937_RS21430	0.11	-0.4
4,880,501	+		DDA3937_RS21430	0.11	+0.5
4,880,501	+		DDA3937_RS21430	0.11	-0.4
4,880,501	+		DDA3937_RS21430	0.11	+2.1
4,880,501	+				+2.1
4,880,501	+		DDA3937_RS21430	0.11	-1.3
4,880,501	+		DDA3937_RS21430	0.11	-2.8
4,880,502	-		DDA3937_RS21430	0.11	+0.9
4,880,502	-		DDA3937_RS21430	0.11	+0.7
4,880,502	-		DDA3937_RS21430	0.11	-0.5
4,880,502	-		DDA3937_RS21430	0.11	+0.6
4,880,502	-		DDA3937_RS21430	0.11	-0.2
4,880,502	-		DDA3937_RS21430	0.11	-1.9
4,880,502	-		DDA3937_RS21430	0.11	-2.1
4,880,509	+		DDA3937_RS21430	0.12	+2.5
4,880,509	+		DDA3937_RS21430	0.12	+1.0
4,880,509	+		DDA3937_RS21430	0.12	+0.5
4,880,510	-		DDA3937_RS21430	0.13	-0.4
4,880,516	-		DDA3937_RS21430	0.13	-0.2
4,880,516	-		DDA3937_RS21430	0.13	-2.3
4,880,579	+		DDA3937_RS21430	0.23	-1.3
4,880,580	-		DDA3937_RS21430	0.23	+1.1
4,880,712	+		DDA3937_RS21430	0.43	+0.1
4,880,712	+		DDA3937_RS21430	0.43	+0.5
4,880,822	+				+2.1
4,880,823	-		DDA3937_RS21430	0.59	-0.6
4,880,823	-		DDA3937_RS21430	0.59	-0.2
4,880,823	-		DDA3937_RS21430	0.59	+0.4
4,880,975	+		DDA3937_RS21430	0.82	-0.4
4,880,975	+		DDA3937_RS21430	0.82	+0.1
4,880,976	-		DDA3937_RS21430	0.82	-1.6
4,880,976	-		DDA3937_RS21430	0.82	-1.7
4,880,976	-		DDA3937_RS21430	0.82	-0.4
4,880,976	-		DDA3937_RS21430	0.82	+0.2
4,880,978	+		DDA3937_RS21430	0.83	-0.5
4,880,979	-		DDA3937_RS21430	0.83	-1.9
4,880,995	+		DDA3937_RS21430	0.85	-0.2
4,880,995	+		DDA3937_RS21430	0.85	-1.8
4,881,150	-				+0.2
4,881,245	-		DDA3937_RS21435	0.19	-3.3
4,881,281	-		DDA3937_RS21435	0.24	+1.9
4,881,343	+		DDA3937_RS21435	0.32	+1.1
4,881,343	+		DDA3937_RS21435	0.32	-1.1
4,881,343	+		DDA3937_RS21435	0.32	+1.0
4,881,344	-		DDA3937_RS21435	0.32	-0.8
4,881,344	-		DDA3937_RS21435	0.32	+0.8
4,881,344	-		DDA3937_RS21435	0.32	-0.9
4,881,356	+		DDA3937_RS21435	0.34	-0.4
4,881,357	-		DDA3937_RS21435	0.34	-0.4
4,881,362	+		DDA3937_RS21435	0.35	-1.0
4,881,363	-		DDA3937_RS21435	0.35	+0.4
4,881,431	-		DDA3937_RS21435	0.44	-0.1
4,881,431	-		DDA3937_RS21435	0.44	-0.2
4,881,431	-		DDA3937_RS21435	0.44	-0.4
4,881,529	+		DDA3937_RS21435	0.57	+0.2
4,881,530	-		DDA3937_RS21435	0.57	-0.9
4,881,530	-		DDA3937_RS21435	0.57	+2.4
4,881,613	+		DDA3937_RS21435	0.68	-0.4
4,881,614	-		DDA3937_RS21435	0.68	+0.7
4,881,614	-		DDA3937_RS21435	0.68	+0.9
4,881,614	-		DDA3937_RS21435	0.68	-1.3
4,881,614	-		DDA3937_RS21435	0.68	+0.9
4,881,614	-		DDA3937_RS21435	0.68	-1.5
4,881,697	+		DDA3937_RS21435	0.79	+0.3
4,881,697	+		DDA3937_RS21435	0.79	-1.2
4,881,698	-		DDA3937_RS21435	0.79	-1.2
4,881,823	+				+0.1
4,881,824	-				-2.2
4,881,824	-				+1.5
4,881,827	+				-1.1
4,881,828	-				-0.0
4,881,828	-				+2.8
4,881,828	-				-1.2
4,881,828	-				-1.2
4,881,828	-				+2.1
4,881,828	-				+2.7
4,881,930	+				-1.1
4,881,932	+				-3.2
4,881,932	+				+1.5
4,881,933	-				-2.7
4,881,933	-				+0.0
4,881,933	-				-0.1
4,881,937	+		DDA3937_RS21440	0.10	+2.1
4,881,937	+		DDA3937_RS21440	0.10	+0.4
4,881,937	+		DDA3937_RS21440	0.10	-0.1
4,881,938	-		DDA3937_RS21440	0.11	-0.2
4,882,001	+		DDA3937_RS21440	0.19	-2.0
4,882,001	+		DDA3937_RS21440	0.19	+0.4
4,882,001	+		DDA3937_RS21440	0.19	-1.9
4,882,001	+		DDA3937_RS21440	0.19	-0.2
4,882,001	+		DDA3937_RS21440	0.19	+0.5
4,882,002	-		DDA3937_RS21440	0.19	+0.5
4,882,002	-		DDA3937_RS21440	0.19	-1.0
4,882,002	-		DDA3937_RS21440	0.19	+0.9
4,882,002	-		DDA3937_RS21440	0.19	-1.8
4,882,002	-		DDA3937_RS21440	0.19	-0.7
4,882,048	-		DDA3937_RS21440	0.25	+0.8
4,882,061	+		DDA3937_RS21440	0.27	-0.8
4,882,061	+		DDA3937_RS21440	0.27	-1.1
4,882,061	+		DDA3937_RS21440	0.27	-0.9
4,882,062	-		DDA3937_RS21440	0.27	+0.5
4,882,062	-		DDA3937_RS21440	0.27	+0.4
4,882,111	+		DDA3937_RS21440	0.34	-0.2
4,882,111	+		DDA3937_RS21440	0.34	-2.0
4,882,111	+		DDA3937_RS21440	0.34	+0.9
4,882,111	+		DDA3937_RS21440	0.34	-0.5
4,882,111	+		DDA3937_RS21440	0.34	+0.3
4,882,111	+		DDA3937_RS21440	0.34	-1.2
4,882,111	+		DDA3937_RS21440	0.34	-2.2
4,882,111	+		DDA3937_RS21440	0.34	+0.9
4,882,112	-		DDA3937_RS21440	0.34	+0.6
4,882,112	-		DDA3937_RS21440	0.34	-2.3
4,882,112	-				+0.5
4,882,112	-		DDA3937_RS21440	0.34	+1.3
4,882,112	-		DDA3937_RS21440	0.34	-0.5
4,882,112	-		DDA3937_RS21440	0.34	-1.2
4,882,112	-		DDA3937_RS21440	0.34	-0.9
4,882,112	-		DDA3937_RS21440	0.34	-0.9
4,882,112	-		DDA3937_RS21440	0.34	+0.2
4,882,112	-		DDA3937_RS21440	0.34	+1.4
4,882,116	-		DDA3937_RS21440	0.34	-2.3
4,882,116	-		DDA3937_RS21440	0.34	-3.0
4,882,160	+		DDA3937_RS21440	0.40	-1.9
4,882,161	-		DDA3937_RS21440	0.40	-3.3
4,882,161	-		DDA3937_RS21440	0.40	-1.3
4,882,226	+		DDA3937_RS21440	0.49	-1.3
4,882,226	+		DDA3937_RS21440	0.49	+0.7
4,882,227	-		DDA3937_RS21440	0.49	+1.0
4,882,227	-		DDA3937_RS21440	0.49	+0.9
4,882,294	+		DDA3937_RS21440	0.58	-1.8
4,882,294	+		DDA3937_RS21440	0.58	-1.0
4,882,295	-		DDA3937_RS21440	0.58	-0.9
4,882,295	-		DDA3937_RS21440	0.58	+1.1
4,882,407	-		DDA3937_RS21440	0.73	-1.4
4,882,437	+		DDA3937_RS21440	0.77	-0.4
4,882,548	-				+1.2
4,882,587	+				-1.8
4,882,588	-				-1.6
4,882,673	+				+2.3
4,882,673	+				-1.2
4,882,674	-				+1.4
4,882,674	-				+1.1
4,882,679	+				+0.1
4,882,693	-				-0.1
4,882,693	-				-0.7
4,882,783	+		DDA3937_RS21445	0.11	-1.2