Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21335 and DDA3937_RS21340 are separated by 124 nucleotides DDA3937_RS21340 and DDA3937_RS21345 are separated by 142 nucleotides DDA3937_RS21345 and DDA3937_RS21350 are separated by 113 nucleotides
DDA3937_RS21335: DDA3937_RS21335 - 4-hydroxyphenylpyruvate dioxygenase, at 4,860,486 to 4,861,571
_RS21335
DDA3937_RS21340: DDA3937_RS21340 - helix-turn-helix transcriptional regulator, at 4,861,696 to 4,862,076
_RS21340
DDA3937_RS21345: DDA3937_RS21345 - NAD(P)-dependent oxidoreductase, at 4,862,219 to 4,862,830
_RS21345
DDA3937_RS21350: DDA3937_RS21350 - GNAT family N-acetyltransferase, at 4,862,944 to 4,863,423
_RS21350
Position (kb) 4861
4862
4863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4860.735 kb on + strand, within DDA3937_RS21335 at 4860.736 kb on - strand, within DDA3937_RS21335 at 4860.862 kb on - strand, within DDA3937_RS21335 at 4860.877 kb on - strand, within DDA3937_RS21335 at 4860.889 kb on + strand, within DDA3937_RS21335 at 4860.889 kb on + strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.912 kb on - strand, within DDA3937_RS21335 at 4860.912 kb on - strand, within DDA3937_RS21335 at 4860.960 kb on - strand, within DDA3937_RS21335 at 4860.988 kb on - strand, within DDA3937_RS21335 at 4861.091 kb on + strand, within DDA3937_RS21335 at 4861.091 kb on + strand, within DDA3937_RS21335 at 4861.091 kb on + strand, within DDA3937_RS21335 at 4861.133 kb on - strand, within DDA3937_RS21335 at 4861.229 kb on + strand, within DDA3937_RS21335 at 4861.238 kb on + strand, within DDA3937_RS21335 at 4861.239 kb on - strand, within DDA3937_RS21335 at 4861.292 kb on + strand, within DDA3937_RS21335 at 4861.296 kb on + strand, within DDA3937_RS21335 at 4861.296 kb on + strand at 4861.296 kb on + strand, within DDA3937_RS21335 at 4861.296 kb on + strand, within DDA3937_RS21335 at 4861.296 kb on + strand, within DDA3937_RS21335 at 4861.296 kb on + strand, within DDA3937_RS21335 at 4861.296 kb on + strand, within DDA3937_RS21335 at 4861.296 kb on + strand, within DDA3937_RS21335 at 4861.297 kb on - strand, within DDA3937_RS21335 at 4861.297 kb on - strand, within DDA3937_RS21335 at 4861.297 kb on - strand, within DDA3937_RS21335 at 4861.297 kb on - strand, within DDA3937_RS21335 at 4861.299 kb on + strand, within DDA3937_RS21335 at 4861.299 kb on + strand, within DDA3937_RS21335 at 4861.299 kb on + strand, within DDA3937_RS21335 at 4861.299 kb on + strand, within DDA3937_RS21335 at 4861.300 kb on - strand, within DDA3937_RS21335 at 4861.300 kb on - strand, within DDA3937_RS21335 at 4861.569 kb on + strand at 4861.569 kb on + strand at 4861.576 kb on + strand at 4861.576 kb on + strand at 4861.577 kb on - strand at 4861.582 kb on + strand at 4861.583 kb on - strand at 4861.591 kb on + strand at 4861.591 kb on + strand at 4861.592 kb on - strand at 4861.677 kb on + strand at 4861.677 kb on + strand at 4861.677 kb on + strand at 4861.678 kb on - strand at 4861.678 kb on - strand at 4861.678 kb on - strand at 4861.678 kb on - strand at 4861.715 kb on + strand at 4861.716 kb on - strand at 4861.716 kb on - strand at 4861.716 kb on - strand at 4861.716 kb on - strand at 4861.716 kb on - strand at 4861.716 kb on - strand at 4861.818 kb on - strand, within DDA3937_RS21340 at 4861.844 kb on + strand, within DDA3937_RS21340 at 4861.844 kb on + strand, within DDA3937_RS21340 at 4861.844 kb on + strand, within DDA3937_RS21340 at 4861.914 kb on + strand, within DDA3937_RS21340 at 4861.942 kb on - strand, within DDA3937_RS21340 at 4862.114 kb on + strand at 4862.115 kb on - strand at 4862.158 kb on - strand at 4862.206 kb on + strand at 4862.227 kb on + strand at 4862.227 kb on + strand at 4862.227 kb on + strand at 4862.228 kb on - strand at 4862.228 kb on - strand at 4862.228 kb on - strand at 4862.228 kb on - strand at 4862.228 kb on - strand at 4862.236 kb on + strand at 4862.237 kb on - strand at 4862.271 kb on + strand at 4862.370 kb on + strand, within DDA3937_RS21345 at 4862.370 kb on + strand, within DDA3937_RS21345 at 4862.370 kb on + strand, within DDA3937_RS21345 at 4862.370 kb on + strand, within DDA3937_RS21345 at 4862.370 kb on + strand, within DDA3937_RS21345 at 4862.370 kb on + strand, within DDA3937_RS21345 at 4862.371 kb on - strand, within DDA3937_RS21345 at 4862.371 kb on - strand, within DDA3937_RS21345 at 4862.371 kb on - strand, within DDA3937_RS21345 at 4862.371 kb on - strand, within DDA3937_RS21345 at 4862.371 kb on - strand, within DDA3937_RS21345 at 4862.371 kb on - strand, within DDA3937_RS21345 at 4862.379 kb on + strand, within DDA3937_RS21345 at 4862.379 kb on + strand, within DDA3937_RS21345 at 4862.379 kb on + strand, within DDA3937_RS21345 at 4862.380 kb on - strand, within DDA3937_RS21345 at 4862.380 kb on - strand at 4862.576 kb on + strand, within DDA3937_RS21345 at 4862.576 kb on + strand, within DDA3937_RS21345 at 4862.576 kb on + strand, within DDA3937_RS21345 at 4862.577 kb on - strand, within DDA3937_RS21345 at 4862.577 kb on - strand, within DDA3937_RS21345 at 4862.577 kb on - strand, within DDA3937_RS21345 at 4862.936 kb on - strand at 4862.945 kb on + strand at 4862.946 kb on - strand at 4863.029 kb on + strand, within DDA3937_RS21350
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,860,735 + DDA3937_RS21335 0.23 -1.3 4,860,736 - DDA3937_RS21335 0.23 +0.1 4,860,862 - DDA3937_RS21335 0.35 -0.9 4,860,877 - DDA3937_RS21335 0.36 +2.9 4,860,889 + DDA3937_RS21335 0.37 -0.9 4,860,889 + DDA3937_RS21335 0.37 -2.0 4,860,890 - DDA3937_RS21335 0.37 -1.3 4,860,890 - DDA3937_RS21335 0.37 -3.0 4,860,890 - DDA3937_RS21335 0.37 -0.6 4,860,890 - DDA3937_RS21335 0.37 -1.3 4,860,890 - DDA3937_RS21335 0.37 -2.3 4,860,890 - DDA3937_RS21335 0.37 -1.3 4,860,912 - DDA3937_RS21335 0.39 +0.3 4,860,912 - DDA3937_RS21335 0.39 -2.9 4,860,960 - DDA3937_RS21335 0.44 -1.4 4,860,988 - DDA3937_RS21335 0.46 -2.5 4,861,091 + DDA3937_RS21335 0.56 -1.2 4,861,091 + DDA3937_RS21335 0.56 -0.5 4,861,091 + DDA3937_RS21335 0.56 -1.3 4,861,133 - DDA3937_RS21335 0.60 -1.6 4,861,229 + DDA3937_RS21335 0.68 -1.9 4,861,238 + DDA3937_RS21335 0.69 +0.5 4,861,239 - DDA3937_RS21335 0.69 +0.1 4,861,292 + DDA3937_RS21335 0.74 -2.0 4,861,296 + DDA3937_RS21335 0.75 -2.6 4,861,296 + +1.1 4,861,296 + DDA3937_RS21335 0.75 -1.1 4,861,296 + DDA3937_RS21335 0.75 -1.6 4,861,296 + DDA3937_RS21335 0.75 -0.7 4,861,296 + DDA3937_RS21335 0.75 +0.8 4,861,296 + DDA3937_RS21335 0.75 -0.3 4,861,296 + DDA3937_RS21335 0.75 -3.0 4,861,297 - DDA3937_RS21335 0.75 -2.2 4,861,297 - DDA3937_RS21335 0.75 -0.5 4,861,297 - DDA3937_RS21335 0.75 -0.6 4,861,297 - DDA3937_RS21335 0.75 +1.9 4,861,299 + DDA3937_RS21335 0.75 +1.0 4,861,299 + DDA3937_RS21335 0.75 -2.9 4,861,299 + DDA3937_RS21335 0.75 -0.8 4,861,299 + DDA3937_RS21335 0.75 +2.7 4,861,300 - DDA3937_RS21335 0.75 -1.4 4,861,300 - DDA3937_RS21335 0.75 -2.8 4,861,569 + -2.6 4,861,569 + -0.4 4,861,576 + -0.2 4,861,576 + +0.1 4,861,577 - +0.6 4,861,582 + +0.4 4,861,583 - -1.6 4,861,591 + -0.5 4,861,591 + +2.1 4,861,592 - +2.4 4,861,677 + -2.5 4,861,677 + -0.9 4,861,677 + -0.2 4,861,678 - -0.5 4,861,678 - -0.9 4,861,678 - +1.7 4,861,678 - +0.3 4,861,715 + -0.5 4,861,716 - -0.2 4,861,716 - -1.1 4,861,716 - -1.0 4,861,716 - +0.3 4,861,716 - -0.5 4,861,716 - +0.2 4,861,818 - DDA3937_RS21340 0.32 -1.3 4,861,844 + DDA3937_RS21340 0.39 -3.3 4,861,844 + DDA3937_RS21340 0.39 -1.6 4,861,844 + DDA3937_RS21340 0.39 -1.8 4,861,914 + DDA3937_RS21340 0.57 -0.2 4,861,942 - DDA3937_RS21340 0.65 -2.3 4,862,114 + +1.5 4,862,115 - -0.9 4,862,158 - +0.8 4,862,206 + +0.3 4,862,227 + -1.5 4,862,227 + +0.1 4,862,227 + -1.7 4,862,228 - +0.2 4,862,228 - -1.7 4,862,228 - -1.9 4,862,228 - +1.0 4,862,228 - -0.7 4,862,236 + -0.1 4,862,237 - -1.2 4,862,271 + -0.2 4,862,370 + DDA3937_RS21345 0.25 -0.7 4,862,370 + DDA3937_RS21345 0.25 +0.5 4,862,370 + DDA3937_RS21345 0.25 -0.3 4,862,370 + DDA3937_RS21345 0.25 -0.1 4,862,370 + DDA3937_RS21345 0.25 -2.8 4,862,370 + DDA3937_RS21345 0.25 -1.2 4,862,371 - DDA3937_RS21345 0.25 +2.0 4,862,371 - DDA3937_RS21345 0.25 -0.2 4,862,371 - DDA3937_RS21345 0.25 -1.3 4,862,371 - DDA3937_RS21345 0.25 -0.3 4,862,371 - DDA3937_RS21345 0.25 -2.1 4,862,371 - DDA3937_RS21345 0.25 -2.0 4,862,379 + DDA3937_RS21345 0.26 -1.2 4,862,379 + DDA3937_RS21345 0.26 -0.5 4,862,379 + DDA3937_RS21345 0.26 -1.1 4,862,380 - DDA3937_RS21345 0.26 +2.1 4,862,380 - +1.1 4,862,576 + DDA3937_RS21345 0.58 -0.3 4,862,576 + DDA3937_RS21345 0.58 -1.4 4,862,576 + DDA3937_RS21345 0.58 +0.5 4,862,577 - DDA3937_RS21345 0.58 -0.7 4,862,577 - DDA3937_RS21345 0.58 -2.2 4,862,577 - DDA3937_RS21345 0.58 -0.2 4,862,936 - -1.1 4,862,945 + -0.9 4,862,946 - -0.6 4,863,029 + DDA3937_RS21350 0.18 -2.1
Or see this region's nucleotide sequence