Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21250

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,838,222	-		DDA3937_RS21245	0.61	-1.6
4,838,223	+		DDA3937_RS21245	0.61	-0.5
4,838,295	+		DDA3937_RS21245	0.66	-1.1
4,838,457	+		DDA3937_RS21245	0.78	-0.2
4,838,458	-		DDA3937_RS21245	0.78	-1.3
4,838,458	-		DDA3937_RS21245	0.78	+0.7
4,838,458	-		DDA3937_RS21245	0.78	+2.3
4,838,458	-		DDA3937_RS21245	0.78	+2.7
4,838,481	+		DDA3937_RS21245	0.80	+2.6
4,838,506	+		DDA3937_RS21245	0.82	+2.3
4,838,506	+		DDA3937_RS21245	0.82	+0.9
4,838,506	+		DDA3937_RS21245	0.82	+0.7
4,838,507	-		DDA3937_RS21245	0.82	+1.1
4,838,515	+		DDA3937_RS21245	0.82	-2.3
4,838,557	-				-0.2
4,838,676	+				+0.5
4,838,676	+				+2.1
4,838,676	+				+0.3
4,838,733	+				-0.9
4,838,733	+				+0.1
4,838,739	+				+0.1
4,838,740	-				+2.3
4,838,774	+				-0.9
4,838,777	-				-1.3
4,838,793	+				+0.5
4,838,794	-				+1.8
4,838,794	-				-1.2
4,838,794	-				-0.2
4,838,797	+				-0.2
4,838,797	+				-0.2
4,838,798	-				+1.0
4,838,798	-				+0.1
4,838,798	-				+0.7
4,838,844	+				+0.5
4,838,845	-				-0.0
4,838,893	+				+1.4
4,838,893	+				-1.5
4,838,893	+				-0.2
4,838,893	+				+0.1
4,838,893	+				-0.9
4,838,893	+				-1.5
4,838,894	-				-1.6
4,838,894	-				-1.1
4,838,894	-				+0.5
4,838,894	-				+2.1
4,838,894	-				+0.7
4,838,894	-				+0.6
4,838,894	-				-1.2
4,838,894	-				+0.6
4,838,923	+				-1.1
4,838,923	+				+1.6
4,838,924	-				+0.0
4,838,924	-				+0.2
4,838,924	-				+1.0
4,838,924	-				+1.0
4,838,924	-				-2.4
4,838,924	-				-0.7
4,838,924	-				+0.7
4,838,925	+				-0.4
4,838,925	+				-0.6
4,838,925	+				-0.9
4,838,926	-				-0.5
4,838,926	-				-1.7
4,838,939	+				+2.1
4,838,939	+				-2.3
4,838,940	-				-0.5
4,838,941	+				-2.6
4,838,941	+				+2.1
4,838,941	+				+0.2
4,838,941	+				-1.1
4,838,941	+				-1.6
4,838,942	-				-1.5
4,838,942	-				-0.7
4,839,003	+				-1.3
4,839,003	+				+0.1
4,839,003	+				-2.1
4,839,004	-				-0.6
4,839,004	-				+0.5
4,839,004	-				-1.2
4,839,004	-				-0.2
4,839,004	-				-1.6
4,839,055	+				+0.3
4,839,055	+				-2.7
4,839,056	-				-0.2
4,839,056	-				-2.0
4,839,056	-				+0.5
4,839,152	+				-2.6
4,839,225	-		DDA3937_RS21250	0.13	-0.5
4,839,225	-		DDA3937_RS21250	0.13	+0.1
4,839,372	+		DDA3937_RS21250	0.30	+1.1
4,839,373	-		DDA3937_RS21250	0.30	+0.7
4,839,413	+		DDA3937_RS21250	0.34	+0.3
4,839,413	+		DDA3937_RS21250	0.34	-0.3
4,839,414	-		DDA3937_RS21250	0.34	+0.7
4,839,414	-		DDA3937_RS21250	0.34	+0.6
4,839,414	-				+1.1
4,839,619	-		DDA3937_RS21250	0.57	+0.4
4,839,631	+		DDA3937_RS21250	0.58	+1.8
4,839,687	+				+0.1
4,839,688	-		DDA3937_RS21250	0.64	-0.1
4,839,688	-		DDA3937_RS21250	0.64	-1.3
4,839,688	-		DDA3937_RS21250	0.64	+1.2
4,839,912	-		DDA3937_RS21250	0.89	+0.6
4,839,940	+				+0.7
4,840,013	-				-0.7
4,840,014	+				-0.3
4,840,014	+				-0.4
4,840,015	-				-1.3
4,840,031	-				+0.2
4,840,038	+				-1.5
4,840,039	-				+2.1
4,840,045	+				-2.6
4,840,045	+				-0.2
4,840,045	+				-2.1
4,840,046	-				-1.1
4,840,053	+				-2.6
4,840,054	-				+0.1
4,840,064	+				-2.5
4,840,064	+				-0.1
4,840,064	+				-0.5
4,840,064	+				-0.9
4,840,065	-				+0.8
4,840,065	-				+1.1
4,840,065	-				-1.7
4,840,065	-				-0.1
4,840,065	-				+0.8
4,840,065	-				-1.6
4,840,077	-				-0.2
4,840,419	-		DDA3937_RS21255	0.41	+0.2
4,840,498	+		DDA3937_RS21255	0.50	-0.9
4,840,498	+		DDA3937_RS21255	0.50	-0.1
4,840,498	+		DDA3937_RS21255	0.50	-0.9
4,840,499	-		DDA3937_RS21255	0.50	+0.3
4,840,499	-		DDA3937_RS21255	0.50	-2.0
4,840,499	-		DDA3937_RS21255	0.50	-0.5
4,840,499	-		DDA3937_RS21255	0.50	-1.3
4,840,631	+		DDA3937_RS21255	0.66	-0.3
4,840,632	-		DDA3937_RS21255	0.66	+1.9
4,840,653	+		DDA3937_RS21255	0.69	-0.5
4,840,653	+		DDA3937_RS21255	0.69	-0.9
4,840,654	-		DDA3937_RS21255	0.69	-1.6
4,840,654	-		DDA3937_RS21255	0.69	-3.4
4,840,654	-		DDA3937_RS21255	0.69	-1.3
4,840,655	+		DDA3937_RS21255	0.69	-1.1
4,840,655	+		DDA3937_RS21255	0.69	-1.7
4,840,655	+		DDA3937_RS21255	0.69	+1.9
4,840,656	-		DDA3937_RS21255	0.69	-0.1
4,840,676	+		DDA3937_RS21255	0.71	-0.9
4,840,676	+		DDA3937_RS21255	0.71	-1.4
4,840,676	+		DDA3937_RS21255	0.71	-2.0
4,840,676	+		DDA3937_RS21255	0.71	-1.8
4,840,676	+		DDA3937_RS21255	0.71	-0.5
4,840,677	-		DDA3937_RS21255	0.71	-1.4
4,840,677	-		DDA3937_RS21255	0.71	-1.3
4,840,677	-		DDA3937_RS21255	0.71	-1.3
4,840,677	-		DDA3937_RS21255	0.71	-2.1
4,840,677	-		DDA3937_RS21255	0.71	-1.9
4,840,677	-		DDA3937_RS21255	0.71	+1.1
4,840,806	-		DDA3937_RS21255	0.87	-1.3
4,840,907	+				+1.7
4,840,908	-				-0.3
4,840,917	+				-1.2
4,840,917	+				-0.5
4,840,917	+				-2.9
4,840,917	+				+0.6
4,840,918	-				+1.7
4,840,918	-				-1.3
4,840,918	-				-1.2
4,840,918	-				+0.9
4,840,918	-				+1.1
4,840,967	-				-0.8
4,840,969	+				+2.2
4,840,969	+				-1.6
4,840,969	+				-1.6
4,840,969	+				-2.1
4,840,969	+				-0.2
4,840,969	+				-0.7
4,840,969	+				+2.1
4,840,969	+				-0.1
4,840,969	+				+0.9
4,840,969	+				-1.3
4,840,969	+				-3.0
4,840,969	+				+0.5
4,840,970	-				+0.1
4,840,970	-				+1.8
4,840,970	-				-1.1
4,840,970	-				-2.3
4,840,970	-				-1.0
4,840,970	-				+0.1
4,840,970	-				-0.2
4,840,971	+				-0.9
4,840,971	+				-1.6
4,840,971	+				+1.7
4,840,972	-				+1.1
4,840,972	-				-1.9
4,840,976	+				-0.5
4,840,976	+				-3.6
4,840,980	+				-0.7
4,840,981	-				-0.5
4,840,981	-				-0.9