Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21210

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,827,331	+		DDA3937_RS21200	0.75	-3.4
4,827,332	-		DDA3937_RS21200	0.75	-0.6
4,827,332	-		DDA3937_RS21200	0.75	-0.8
4,827,355	+		DDA3937_RS21200	0.77	+0.6
4,827,355	+		DDA3937_RS21200	0.77	+0.7
4,827,355	+		DDA3937_RS21200	0.77	-0.2
4,827,356	-		DDA3937_RS21200	0.77	+0.1
4,827,367	+		DDA3937_RS21200	0.78	+0.1
4,827,367	+				-0.2
4,827,367	+		DDA3937_RS21200	0.78	-0.3
4,827,367	+		DDA3937_RS21200	0.78	-3.1
4,827,410	+		DDA3937_RS21200	0.82	+0.8
4,827,410	+		DDA3937_RS21200	0.82	+1.1
4,827,410	+		DDA3937_RS21200	0.82	-1.3
4,827,410	+		DDA3937_RS21200	0.82	+0.5
4,827,438	+		DDA3937_RS21200	0.84	+0.4
4,827,439	-		DDA3937_RS21200	0.84	+0.8
4,827,451	+				+0.5
4,827,515	+				+0.1
4,827,515	+				-2.4
4,827,516	-				+0.1
4,827,516	-				+0.9
4,827,762	+		DDA3937_RS21205	0.31	-0.3
4,827,762	+		DDA3937_RS21205	0.31	-2.2
4,827,879	+		DDA3937_RS21205	0.56	-2.1
4,827,879	+		DDA3937_RS21205	0.56	-0.7
4,827,879	+		DDA3937_RS21205	0.56	-1.2
4,827,880	-		DDA3937_RS21205	0.56	-0.5
4,827,884	-		DDA3937_RS21205	0.57	-1.2
4,827,884	-		DDA3937_RS21205	0.57	-0.7
4,827,884	-		DDA3937_RS21205	0.57	+0.1
4,827,932	-		DDA3937_RS21205	0.67	-2.3
4,828,100	-				-1.8
4,828,231	+				-0.7
4,828,250	+				-0.8
4,828,289	+				-1.1
4,828,289	+				-1.1
4,828,289	+				-2.3
4,828,290	-				-1.5
4,828,367	+		DDA3937_RS21210	0.13	-3.4
4,828,367	+		DDA3937_RS21210	0.13	-1.5
4,828,367	+		DDA3937_RS21210	0.13	-2.6
4,828,367	+		DDA3937_RS21210	0.13	-1.4
4,828,368	-		DDA3937_RS21210	0.13	-0.3
4,828,368	-		DDA3937_RS21210	0.13	-3.1
4,828,368	-		DDA3937_RS21210	0.13	-0.7
4,828,368	-		DDA3937_RS21210	0.13	-2.2
4,828,368	-		DDA3937_RS21210	0.13	-2.6
4,828,463	+		DDA3937_RS21210	0.27	+0.9
4,828,463	+		DDA3937_RS21210	0.27	-0.7
4,828,464	-		DDA3937_RS21210	0.28	-0.2
4,828,479	+		DDA3937_RS21210	0.30	-0.1
4,828,479	+		DDA3937_RS21210	0.30	-0.5
4,828,480	-		DDA3937_RS21210	0.30	-0.5
4,828,480	-		DDA3937_RS21210	0.30	-0.8
4,828,480	-		DDA3937_RS21210	0.30	-2.1
4,828,506	+		DDA3937_RS21210	0.34	-2.5
4,828,518	+		DDA3937_RS21210	0.36	-1.1
4,828,540	+		DDA3937_RS21210	0.39	-2.3
4,828,541	-		DDA3937_RS21210	0.40	-2.5
4,828,639	+		DDA3937_RS21210	0.55	+1.4
4,828,639	+		DDA3937_RS21210	0.55	-2.4
4,828,639	+		DDA3937_RS21210	0.55	-1.0
4,828,639	+		DDA3937_RS21210	0.55	-2.0
4,828,639	+				+0.5
4,828,639	+		DDA3937_RS21210	0.55	-2.2
4,828,639	+		DDA3937_RS21210	0.55	-1.3
4,828,639	+		DDA3937_RS21210	0.55	-1.6
4,828,639	+		DDA3937_RS21210	0.55	-1.1
4,828,640	-		DDA3937_RS21210	0.55	+1.1
4,828,640	-		DDA3937_RS21210	0.55	-0.3
4,828,640	-		DDA3937_RS21210	0.55	-3.3
4,828,640	-		DDA3937_RS21210	0.55	+0.5
4,828,640	-		DDA3937_RS21210	0.55	-1.9
4,828,640	-		DDA3937_RS21210	0.55	-0.2
4,828,640	-		DDA3937_RS21210	0.55	-1.6
4,828,640	-		DDA3937_RS21210	0.55	+1.4
4,828,640	-		DDA3937_RS21210	0.55	-0.2
4,828,642	-		DDA3937_RS21210	0.55	-0.9
4,828,757	-		DDA3937_RS21210	0.73	+1.2
4,828,767	+		DDA3937_RS21210	0.74	-2.0
4,828,768	-		DDA3937_RS21210	0.75	-0.5
4,828,905	+				+0.7
4,828,905	+				-0.4
4,828,943	+				-0.8
4,828,943	+				-3.4
4,828,944	-				-1.2
4,828,944	-				-0.9
4,828,949	+				-0.2
4,828,950	-				-0.2
4,828,977	-				+0.9
4,829,032	-				-0.7
4,829,104	-		DDA3937_RS21215	0.11	+0.5
4,829,123	+		DDA3937_RS21215	0.13	+0.8
4,829,123	+		DDA3937_RS21215	0.13	-1.5
4,829,123	+		DDA3937_RS21215	0.13	-1.1
4,829,123	+		DDA3937_RS21215	0.13	+0.3
4,829,123	+		DDA3937_RS21215	0.13	+0.8
4,829,123	+		DDA3937_RS21215	0.13	-1.4
4,829,124	-		DDA3937_RS21215	0.13	+1.7
4,829,124	-		DDA3937_RS21215	0.13	+0.2
4,829,124	-				+3.4
4,829,124	-		DDA3937_RS21215	0.13	+0.4
4,829,124	-		DDA3937_RS21215	0.13	-1.0
4,829,124	-		DDA3937_RS21215	0.13	-0.1
4,829,153	+		DDA3937_RS21215	0.15	-2.1
4,829,153	+		DDA3937_RS21215	0.15	+0.3
4,829,154	-		DDA3937_RS21215	0.15	-1.3
4,829,299	-		DDA3937_RS21215	0.27	+0.3
4,829,305	+		DDA3937_RS21215	0.28	+1.0
4,829,306	-		DDA3937_RS21215	0.28	-1.1
4,829,306	-		DDA3937_RS21215	0.28	-0.4
4,829,306	-		DDA3937_RS21215	0.28	-0.8
4,829,306	-		DDA3937_RS21215	0.28	-0.7
4,829,309	+		DDA3937_RS21215	0.28	+0.1
4,829,309	+		DDA3937_RS21215	0.28	+1.9
4,829,309	+		DDA3937_RS21215	0.28	-1.5
4,829,309	+		DDA3937_RS21215	0.28	-1.2
4,829,310	-		DDA3937_RS21215	0.28	-1.2
4,829,310	-		DDA3937_RS21215	0.28	-0.6
4,829,310	-		DDA3937_RS21215	0.28	-0.4
4,829,310	-		DDA3937_RS21215	0.28	-1.0
4,829,310	-		DDA3937_RS21215	0.28	+0.7
4,829,411	-		DDA3937_RS21215	0.37	-1.3
4,829,427	+		DDA3937_RS21215	0.38	+0.1
4,829,439	+		DDA3937_RS21215	0.39	-1.8
4,829,440	-		DDA3937_RS21215	0.39	-1.7
4,829,516	-		DDA3937_RS21215	0.46	-0.1
4,829,647	+		DDA3937_RS21215	0.57	-1.7
4,829,647	+		DDA3937_RS21215	0.57	+0.4
4,829,647	+		DDA3937_RS21215	0.57	+0.0
4,829,667	+		DDA3937_RS21215	0.59	+1.5
4,829,668	-		DDA3937_RS21215	0.59	-1.9
4,829,687	-		DDA3937_RS21215	0.60	+0.8
4,829,727	+		DDA3937_RS21215	0.64	-1.3
4,829,731	-		DDA3937_RS21215	0.64	-1.2
4,829,731	-		DDA3937_RS21215	0.64	-1.4
4,829,754	+		DDA3937_RS21215	0.66	-2.7
4,829,769	+		DDA3937_RS21215	0.67	-0.7
4,829,770	-		DDA3937_RS21215	0.67	-2.5
4,829,858	-		DDA3937_RS21215	0.75	-0.7
4,829,871	+		DDA3937_RS21215	0.76	-0.4
4,829,897	+		DDA3937_RS21215	0.78	+0.1
4,829,907	+		DDA3937_RS21215	0.79	-0.9