Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21045

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,788,337	+		DDA3937_RS21040	0.39	-3.3
4,788,337	+				+0.5
4,788,338	-		DDA3937_RS21040	0.39	-0.1
4,788,341	-		DDA3937_RS21040	0.39	-0.7
4,788,361	-		DDA3937_RS21040	0.41	-0.5
4,788,396	+		DDA3937_RS21040	0.44	-3.6
4,788,464	+		DDA3937_RS21040	0.50	+0.7
4,788,465	-		DDA3937_RS21040	0.50	-2.1
4,788,508	+		DDA3937_RS21040	0.54	-0.8
4,788,509	-		DDA3937_RS21040	0.54	-3.1
4,788,589	+		DDA3937_RS21040	0.61	+0.2
4,788,589	+		DDA3937_RS21040	0.61	+2.8
4,788,589	+		DDA3937_RS21040	0.61	-1.7
4,788,589	+		DDA3937_RS21040	0.61	+2.7
4,788,590	-		DDA3937_RS21040	0.61	-2.0
4,788,657	+		DDA3937_RS21040	0.67	+1.1
4,788,657	+		DDA3937_RS21040	0.67	-1.1
4,788,657	+		DDA3937_RS21040	0.67	+0.8
4,788,657	+		DDA3937_RS21040	0.67	+0.2
4,788,658	-		DDA3937_RS21040	0.67	-0.5
4,788,658	-		DDA3937_RS21040	0.67	-0.3
4,788,658	-		DDA3937_RS21040	0.67	+1.1
4,788,658	-		DDA3937_RS21040	0.67	-0.4
4,788,658	-				+0.5
4,788,658	-		DDA3937_RS21040	0.67	+0.2
4,788,658	-		DDA3937_RS21040	0.67	-0.2
4,788,674	-		DDA3937_RS21040	0.69	+0.1
4,788,726	+		DDA3937_RS21040	0.73	-0.2
4,788,733	-		DDA3937_RS21040	0.74	+0.4
4,788,999	+				+0.3
4,788,999	+				+1.1
4,788,999	+				-1.6
4,789,000	-				+1.4
4,789,023	+				+2.7
4,789,023	+				-0.9
4,789,023	+				-0.7
4,789,023	+				-0.9
4,789,023	+				-0.0
4,789,023	+				-0.1
4,789,023	+				-1.2
4,789,024	-				-2.1
4,789,024	-				-1.1
4,789,024	-				-1.7
4,789,025	+				-0.6
4,789,025	+				-0.8
4,789,025	+				-2.9
4,789,025	+				-0.9
4,789,025	+				-0.5
4,789,025	+				-1.1
4,789,026	-				+1.2
4,789,026	-				-1.1
4,789,026	-				-2.1
4,789,026	-				-1.2
4,789,026	-				-1.7
4,789,026	-				+0.5
4,789,063	+				+0.5
4,789,064	-				-0.4
4,789,064	-				-0.2
4,789,064	-				+2.8
4,789,116	+				-1.1
4,789,116	+				-1.1
4,789,184	+				-0.7
4,789,193	+				-0.2
4,789,193	+				-0.5
4,789,200	+				+0.3
4,789,200	+				+0.6
4,789,201	-				+1.3
4,789,203	+				-0.2
4,789,203	+				-0.3
4,789,203	+				-2.2
4,789,203	+				-1.0
4,789,203	+				+0.7
4,789,204	-				-2.3
4,789,204	-				-1.1
4,789,204	-				+0.9
4,789,257	-				-0.2
4,789,336	+				-1.4
4,789,336	+				-0.6
4,789,336	+				+0.4
4,789,495	+		DDA3937_RS21045	0.18	-0.5
4,789,496	-		DDA3937_RS21045	0.19	-2.3
4,789,519	+		DDA3937_RS21045	0.20	-3.6
4,789,519	+		DDA3937_RS21045	0.20	-4.6
4,789,519	+		DDA3937_RS21045	0.20	-3.3
4,789,520	-		DDA3937_RS21045	0.21	-2.3
4,789,520	-		DDA3937_RS21045	0.21	-0.9
4,789,520	-		DDA3937_RS21045	0.21	-2.0
4,789,520	-		DDA3937_RS21045	0.21	-0.1
4,789,520	-		DDA3937_RS21045	0.21	-3.0
4,789,520	-				+0.1
4,789,589	+		DDA3937_RS21045	0.26	-2.6
4,789,589	+		DDA3937_RS21045	0.26	-2.1
4,789,589	+		DDA3937_RS21045	0.26	-0.6
4,789,590	-		DDA3937_RS21045	0.26	-0.5
4,789,590	-		DDA3937_RS21045	0.26	-1.5
4,789,597	+		DDA3937_RS21045	0.27	-1.8
4,789,597	+		DDA3937_RS21045	0.27	-0.2
4,789,615	-		DDA3937_RS21045	0.28	-1.6
4,789,685	+		DDA3937_RS21045	0.34	+0.8
4,789,685	+		DDA3937_RS21045	0.34	-2.2
4,789,685	+		DDA3937_RS21045	0.34	-0.2
4,789,686	-		DDA3937_RS21045	0.34	+0.5
4,789,695	+		DDA3937_RS21045	0.35	-1.5
4,789,696	-		DDA3937_RS21045	0.35	-3.1
4,789,696	-		DDA3937_RS21045	0.35	-1.1
4,789,732	-		DDA3937_RS21045	0.38	-2.7
4,789,779	+		DDA3937_RS21045	0.42	-1.5
4,789,796	+		DDA3937_RS21045	0.44	-2.4
4,789,873	+		DDA3937_RS21045	0.50	-0.7
4,789,950	-		DDA3937_RS21045	0.56	-3.1
4,789,950	-		DDA3937_RS21045	0.56	-2.8
4,790,002	+		DDA3937_RS21045	0.61	-3.2
4,790,003	-		DDA3937_RS21045	0.61	-3.1
4,790,026	+		DDA3937_RS21045	0.63	-1.7
4,790,027	-		DDA3937_RS21045	0.63	-1.5
4,790,027	-		DDA3937_RS21045	0.63	+0.2
4,790,027	-		DDA3937_RS21045	0.63	-3.1
4,790,027	-		DDA3937_RS21045	0.63	-3.3
4,790,028	+		DDA3937_RS21045	0.63	-2.3
4,790,028	+		DDA3937_RS21045	0.63	-0.5
4,790,028	+		DDA3937_RS21045	0.63	+0.7
4,790,028	+		DDA3937_RS21045	0.63	-1.1
4,790,028	+		DDA3937_RS21045	0.63	+0.5
4,790,028	+		DDA3937_RS21045	0.63	-2.2
4,790,029	-		DDA3937_RS21045	0.63	-3.5
4,790,029	-		DDA3937_RS21045	0.63	-3.3
4,790,029	-		DDA3937_RS21045	0.63	-2.0
4,790,029	-		DDA3937_RS21045	0.63	-0.7
4,790,029	-		DDA3937_RS21045	0.63	-1.2
4,790,029	-		DDA3937_RS21045	0.63	+1.1
4,790,029	-		DDA3937_RS21045	0.63	-1.1
4,790,042	+		DDA3937_RS21045	0.64	-2.0
4,790,042	+		DDA3937_RS21045	0.64	-2.6
4,790,042	+		DDA3937_RS21045	0.64	-0.2
4,790,066	+		DDA3937_RS21045	0.66	-2.6
4,790,121	+		DDA3937_RS21045	0.71	-3.2
4,790,141	+		DDA3937_RS21045	0.72	+0.1
4,790,141	+		DDA3937_RS21045	0.72	-4.4
4,790,141	+		DDA3937_RS21045	0.72	+0.5
4,790,142	-		DDA3937_RS21045	0.72	-2.6
4,790,142	-		DDA3937_RS21045	0.72	-0.3
4,790,211	-		DDA3937_RS21045	0.78	-1.4
4,790,211	-		DDA3937_RS21045	0.78	-2.4
4,790,254	-		DDA3937_RS21045	0.82	+0.2
4,790,254	-		DDA3937_RS21045	0.82	-1.3
4,790,268	+		DDA3937_RS21045	0.83	-3.1
4,790,268	+		DDA3937_RS21045	0.83	-1.2
4,790,268	+		DDA3937_RS21045	0.83	-1.4
4,790,269	-		DDA3937_RS21045	0.83	-1.3
4,790,269	-		DDA3937_RS21045	0.83	-1.5
4,790,269	-		DDA3937_RS21045	0.83	-0.4
4,790,269	-		DDA3937_RS21045	0.83	-0.3
4,790,416	+				-3.4
4,790,476	+				-0.2
4,790,562	+				+1.5
4,790,562	+				-1.3
4,790,562	+				-1.2
4,790,562	+				+1.7
4,790,563	-				+2.1
4,790,563	-				+1.7
4,790,564	+				-2.2
4,790,565	-				-2.1
4,790,565	-				+0.3
4,790,822	+				-1.4
4,790,822	+				-2.1
4,790,823	-				+0.5
4,790,823	-				+0.1
4,790,823	-				+0.5
4,790,823	-				-2.7
4,790,823	-				-3.2
4,790,834	+				-0.5
4,791,122	+		DDA3937_RS21050	0.28	-0.3
4,791,122	+		DDA3937_RS21050	0.28	-1.1
4,791,122	+		DDA3937_RS21050	0.28	+0.2
4,791,122	+		DDA3937_RS21050	0.28	-2.1
4,791,123	-		DDA3937_RS21050	0.28	-1.1
4,791,123	-		DDA3937_RS21050	0.28	+0.5
4,791,123	-		DDA3937_RS21050	0.28	-0.5
4,791,123	-		DDA3937_RS21050	0.28	+3.9
4,791,173	-		DDA3937_RS21050	0.33	-2.7
4,791,173	-		DDA3937_RS21050	0.33	-1.3
4,791,178	+		DDA3937_RS21050	0.33	-0.3
4,791,178	+		DDA3937_RS21050	0.33	-1.1
4,791,178	+		DDA3937_RS21050	0.33	-2.9
4,791,178	+		DDA3937_RS21050	0.33	-1.1
4,791,178	+		DDA3937_RS21050	0.33	-1.4
4,791,178	+		DDA3937_RS21050	0.33	+2.1
4,791,178	+		DDA3937_RS21050	0.33	-2.5
4,791,178	+		DDA3937_RS21050	0.33	-0.9
4,791,178	+		DDA3937_RS21050	0.33	+0.5
4,791,179	-		DDA3937_RS21050	0.33	-1.2
4,791,179	-		DDA3937_RS21050	0.33	-2.0
4,791,179	-		DDA3937_RS21050	0.33	-0.1
4,791,187	-		DDA3937_RS21050	0.34	+0.9
4,791,256	+		DDA3937_RS21050	0.40	-0.5
4,791,256	+		DDA3937_RS21050	0.40	-0.2
4,791,257	-		DDA3937_RS21050	0.40	-1.6
4,791,257	-		DDA3937_RS21050	0.40	-0.0
4,791,257	-		DDA3937_RS21050	0.40	+1.0
4,791,257	-		DDA3937_RS21050	0.40	+0.1
4,791,257	-		DDA3937_RS21050	0.40	-0.2
4,791,365	+		DDA3937_RS21050	0.50	+1.9
4,791,365	+		DDA3937_RS21050	0.50	-0.9
4,791,366	-		DDA3937_RS21050	0.50	-3.4
4,791,375	+		DDA3937_RS21050	0.51	+1.5
4,791,375	+		DDA3937_RS21050	0.51	+1.4
4,791,375	+		DDA3937_RS21050	0.51	-1.5
4,791,375	+		DDA3937_RS21050	0.51	+0.4
4,791,375	+		DDA3937_RS21050	0.51	-1.0
4,791,375	+		DDA3937_RS21050	0.51	-0.2
4,791,376	-		DDA3937_RS21050	0.51	-1.7
4,791,376	-		DDA3937_RS21050	0.51	-1.9
4,791,376	-		DDA3937_RS21050	0.51	+0.5
4,791,394	+		DDA3937_RS21050	0.53	-0.0
4,791,394	+		DDA3937_RS21050	0.53	-2.8
4,791,394	+		DDA3937_RS21050	0.53	-0.2
4,791,394	+		DDA3937_RS21050	0.53	-1.8
4,791,395	-		DDA3937_RS21050	0.53	-2.4
4,791,395	-		DDA3937_RS21050	0.53	+1.1
4,791,395	-		DDA3937_RS21050	0.53	-1.3
4,791,395	-		DDA3937_RS21050	0.53	-1.1