Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20855

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,738,077	+		DDA3937_RS20845	0.78	-0.5
4,738,077	+		DDA3937_RS20845	0.78	+0.6
4,738,077	+		DDA3937_RS20845	0.78	+0.4
4,738,077	+		DDA3937_RS20845	0.78	+0.7
4,738,077	+		DDA3937_RS20845	0.78	-2.5
4,738,077	+		DDA3937_RS20845	0.78	-0.5
4,738,077	+		DDA3937_RS20845	0.78	-0.2
4,738,077	+		DDA3937_RS20845	0.78	-0.4
4,738,078	-		DDA3937_RS20845	0.78	-1.5
4,738,078	-		DDA3937_RS20845	0.78	-1.3
4,738,078	-		DDA3937_RS20845	0.78	+0.8
4,738,078	-		DDA3937_RS20845	0.78	+0.3
4,738,078	-		DDA3937_RS20845	0.78	+1.1
4,738,078	-		DDA3937_RS20845	0.78	+0.5
4,738,078	-		DDA3937_RS20845	0.78	-2.1
4,738,078	-		DDA3937_RS20845	0.78	-0.2
4,738,078	-		DDA3937_RS20845	0.78	-0.2
4,738,078	-		DDA3937_RS20845	0.78	-0.2
4,738,078	-				+0.8
4,738,078	-		DDA3937_RS20845	0.78	-1.9
4,738,078	-		DDA3937_RS20845	0.78	-2.0
4,738,078	-		DDA3937_RS20845	0.78	+2.4
4,738,078	-		DDA3937_RS20845	0.78	+1.7
4,738,078	-		DDA3937_RS20845	0.78	-0.4
4,738,078	-		DDA3937_RS20845	0.78	-2.6
4,738,080	+		DDA3937_RS20845	0.78	+0.1
4,738,081	-		DDA3937_RS20845	0.78	+0.6
4,738,081	-		DDA3937_RS20845	0.78	-1.3
4,738,081	-		DDA3937_RS20845	0.78	-1.7
4,738,081	-		DDA3937_RS20845	0.78	-1.8
4,738,081	-		DDA3937_RS20845	0.78	-0.7
4,738,180	-		DDA3937_RS20845	0.86	-0.2
4,738,251	+				+0.8
4,738,300	+				+0.1
4,738,428	+				+0.4
4,738,429	-				-0.9
4,738,429	-				-2.3
4,738,437	+				-2.0
4,738,437	+				+1.6
4,738,437	+				-2.7
4,738,437	+				-2.1
4,738,438	-				+0.1
4,738,438	-				-4.4
4,738,455	+				-2.4
4,738,455	+				-0.2
4,738,455	+				-0.7
4,738,456	-				-1.8
4,738,456	-				-2.1
4,738,456	-				+0.9
4,738,471	+		DDA3937_RS20850	0.12	+0.1
4,738,523	-		DDA3937_RS20850	0.21	+0.1
4,738,539	+		DDA3937_RS20850	0.23	-0.4
4,738,539	+		DDA3937_RS20850	0.23	-1.2
4,738,587	+		DDA3937_RS20850	0.31	-0.7
4,738,587	+		DDA3937_RS20850	0.31	+0.9
4,738,587	+		DDA3937_RS20850	0.31	-1.4
4,738,587	+		DDA3937_RS20850	0.31	-0.6
4,738,588	-		DDA3937_RS20850	0.31	+0.5
4,738,588	-		DDA3937_RS20850	0.31	+0.7
4,738,588	-		DDA3937_RS20850	0.31	+0.9
4,738,588	-		DDA3937_RS20850	0.31	-0.4
4,738,588	-		DDA3937_RS20850	0.31	-0.0
4,738,715	+		DDA3937_RS20850	0.52	-1.2
4,738,715	+		DDA3937_RS20850	0.52	-0.4
4,738,716	-		DDA3937_RS20850	0.52	-2.6
4,738,716	-		DDA3937_RS20850	0.52	-1.5
4,738,717	+		DDA3937_RS20850	0.52	-1.4
4,738,718	-		DDA3937_RS20850	0.52	-2.0
4,738,783	+		DDA3937_RS20850	0.63	+0.5
4,738,783	+		DDA3937_RS20850	0.63	-1.2
4,738,783	+		DDA3937_RS20850	0.63	-0.8
4,738,784	-		DDA3937_RS20850	0.63	-3.0
4,738,887	+		DDA3937_RS20850	0.80	-0.9
4,738,905	+		DDA3937_RS20850	0.83	-1.2
4,738,905	+		DDA3937_RS20850	0.83	+0.1
4,738,905	+		DDA3937_RS20850	0.83	+1.5
4,738,906	-		DDA3937_RS20850	0.83	+0.5
4,739,045	+		DDA3937_RS20855	0.18	-1.9
4,739,046	-		DDA3937_RS20855	0.18	-1.7
4,739,117	+		DDA3937_RS20855	0.45	+0.5
4,739,117	+		DDA3937_RS20855	0.45	-0.2
4,739,118	-		DDA3937_RS20855	0.45	+1.1
4,739,250	+				+1.1
4,739,250	+				-0.4
4,739,279	+				-1.1
4,739,280	-				+0.5
4,739,280	-				+0.2
4,739,346	-				-3.6
4,739,367	+				-0.9
4,739,367	+				+0.6
4,739,368	-				+0.6
4,739,391	+		DDA3937_RS20860	0.12	-1.2
4,739,412	-				+1.1
4,739,412	-		DDA3937_RS20860	0.14	+0.7
4,739,412	-		DDA3937_RS20860	0.14	+1.0
4,739,461	-		DDA3937_RS20860	0.20	+0.9
4,739,485	+		DDA3937_RS20860	0.22	-2.8
4,739,485	+		DDA3937_RS20860	0.22	-1.2
4,739,485	+		DDA3937_RS20860	0.22	-1.7
4,739,486	-		DDA3937_RS20860	0.22	-2.6
4,739,486	-		DDA3937_RS20860	0.22	-0.7
4,739,500	-		DDA3937_RS20860	0.24	-0.2
4,739,500	-		DDA3937_RS20860	0.24	+0.1
4,739,505	+		DDA3937_RS20860	0.24	-1.1
4,739,539	+		DDA3937_RS20860	0.28	+3.3
4,739,539	+		DDA3937_RS20860	0.28	-2.1
4,739,539	+		DDA3937_RS20860	0.28	-0.5
4,739,539	+		DDA3937_RS20860	0.28	+1.0
4,739,539	+		DDA3937_RS20860	0.28	-0.3
4,739,539	+		DDA3937_RS20860	0.28	-0.4
4,739,539	+		DDA3937_RS20860	0.28	+0.1
4,739,540	-				+3.5
4,739,540	-		DDA3937_RS20860	0.28	-2.2
4,739,540	-		DDA3937_RS20860	0.28	-2.1
4,739,540	-		DDA3937_RS20860	0.28	+2.6
4,739,540	-		DDA3937_RS20860	0.28	-3.4
4,739,540	-		DDA3937_RS20860	0.28	-2.1
4,739,541	+		DDA3937_RS20860	0.28	-0.1
4,739,541	+		DDA3937_RS20860	0.28	+0.4
4,739,542	-		DDA3937_RS20860	0.28	-0.3
4,739,542	-		DDA3937_RS20860	0.28	-1.5
4,739,542	-		DDA3937_RS20860	0.28	-1.3
4,739,542	-		DDA3937_RS20860	0.28	-0.3
4,739,598	+		DDA3937_RS20860	0.34	-3.0
4,739,599	-		DDA3937_RS20860	0.34	-1.2
4,739,602	+		DDA3937_RS20860	0.35	-0.5
4,739,602	+		DDA3937_RS20860	0.35	+0.3
4,739,602	+		DDA3937_RS20860	0.35	-0.9
4,739,602	+		DDA3937_RS20860	0.35	-1.3
4,739,603	-		DDA3937_RS20860	0.35	+1.2
4,739,603	-		DDA3937_RS20860	0.35	-1.3
4,739,643	+		DDA3937_RS20860	0.39	-1.1
4,739,643	+		DDA3937_RS20860	0.39	+3.1
4,739,644	-		DDA3937_RS20860	0.39	-1.6
4,739,646	-		DDA3937_RS20860	0.39	-0.9
4,739,823	+		DDA3937_RS20860	0.58	+0.2
4,739,972	+		DDA3937_RS20860	0.74	+3.3
4,739,973	-		DDA3937_RS20860	0.74	+0.2
4,739,973	-		DDA3937_RS20860	0.74	-2.2
4,739,973	-		DDA3937_RS20860	0.74	+1.3
4,739,973	-		DDA3937_RS20860	0.74	+1.1
4,739,973	-		DDA3937_RS20860	0.74	-0.1
4,740,012	+		DDA3937_RS20860	0.79	+1.3
4,740,012	+		DDA3937_RS20860	0.79	+1.5
4,740,013	-		DDA3937_RS20860	0.79	+1.4
4,740,013	-		DDA3937_RS20860	0.79	+0.9
4,740,013	-		DDA3937_RS20860	0.79	+0.3
4,740,089	+		DDA3937_RS20860	0.87	-0.7
4,740,090	-		DDA3937_RS20860	0.87	-1.9