Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19795

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,507,126	+				+1.6
4,507,126	+				-0.4
4,507,126	+				-1.7
4,507,127	-				-2.5
4,507,127	-				-0.8
4,507,127	-				-2.1
4,507,127	-				-0.9
4,507,127	-				-0.2
4,507,127	-				-0.6
4,507,127	-				+0.8
4,507,127	-				-0.2
4,507,127	-				-0.7
4,507,129	+				-1.9
4,507,129	+				-0.6
4,507,129	+				+0.2
4,507,300	+		DDA3937_RS19790	0.21	-2.6
4,507,304	+		DDA3937_RS19790	0.21	+0.0
4,507,304	+		DDA3937_RS19790	0.21	-1.3
4,507,305	-		DDA3937_RS19790	0.21	-0.8
4,507,313	+		DDA3937_RS19790	0.22	+0.2
4,507,313	+		DDA3937_RS19790	0.22	-0.5
4,507,313	+		DDA3937_RS19790	0.22	-0.6
4,507,313	+		DDA3937_RS19790	0.22	-1.3
4,507,313	+		DDA3937_RS19790	0.22	+2.0
4,507,313	+		DDA3937_RS19790	0.22	-1.2
4,507,314	-		DDA3937_RS19790	0.23	-1.3
4,507,314	-		DDA3937_RS19790	0.23	+0.2
4,507,314	-		DDA3937_RS19790	0.23	-2.3
4,507,314	-		DDA3937_RS19790	0.23	-0.6
4,507,314	-		DDA3937_RS19790	0.23	-0.7
4,507,314	-		DDA3937_RS19790	0.23	+2.7
4,507,314	-		DDA3937_RS19790	0.23	+0.5
4,507,315	+		DDA3937_RS19790	0.23	+0.1
4,507,315	+		DDA3937_RS19790	0.23	-1.8
4,507,315	+		DDA3937_RS19790	0.23	+0.7
4,507,315	+		DDA3937_RS19790	0.23	-2.1
4,507,315	+		DDA3937_RS19790	0.23	+2.0
4,507,316	-		DDA3937_RS19790	0.23	-1.9
4,507,316	-		DDA3937_RS19790	0.23	-1.2
4,507,316	-		DDA3937_RS19790	0.23	-1.5
4,507,316	-		DDA3937_RS19790	0.23	-1.2
4,507,343	-		DDA3937_RS19790	0.26	-1.0
4,507,343	-		DDA3937_RS19790	0.26	-1.9
4,507,343	-		DDA3937_RS19790	0.26	-2.4
4,507,343	-		DDA3937_RS19790	0.26	-2.2
4,507,360	+		DDA3937_RS19790	0.28	-2.6
4,507,360	+		DDA3937_RS19790	0.28	+0.0
4,507,361	-		DDA3937_RS19790	0.28	-2.1
4,507,361	-		DDA3937_RS19790	0.28	-0.3
4,507,361	-		DDA3937_RS19790	0.28	-0.5
4,507,361	-		DDA3937_RS19790	0.28	-1.9
4,507,438	+		DDA3937_RS19790	0.38	-0.9
4,507,438	+		DDA3937_RS19790	0.38	+0.6
4,507,439	-		DDA3937_RS19790	0.38	-1.6
4,507,461	+		DDA3937_RS19790	0.41	-0.8
4,507,462	-		DDA3937_RS19790	0.41	-3.5
4,507,462	-		DDA3937_RS19790	0.41	-0.5
4,507,517	+		DDA3937_RS19790	0.47	-1.9
4,507,517	+		DDA3937_RS19790	0.47	-1.5
4,507,517	+		DDA3937_RS19790	0.47	+0.6
4,507,517	+		DDA3937_RS19790	0.47	-0.6
4,507,517	+		DDA3937_RS19790	0.47	+1.5
4,507,517	+		DDA3937_RS19790	0.47	-0.8
4,507,517	+		DDA3937_RS19790	0.47	+0.2
4,507,517	+		DDA3937_RS19790	0.47	+0.5
4,507,517	+		DDA3937_RS19790	0.47	-0.9
4,507,517	+		DDA3937_RS19790	0.47	-3.4
4,507,517	+		DDA3937_RS19790	0.47	-1.0
4,507,517	+		DDA3937_RS19790	0.47	-1.2
4,507,517	+		DDA3937_RS19790	0.47	-2.0
4,507,517	+		DDA3937_RS19790	0.47	+1.8
4,507,517	+		DDA3937_RS19790	0.47	-0.7
4,507,517	+		DDA3937_RS19790	0.47	-0.4
4,507,517	+		DDA3937_RS19790	0.47	-0.7
4,507,517	+		DDA3937_RS19790	0.47	-1.6
4,507,518	-		DDA3937_RS19790	0.48	-1.9
4,507,518	-		DDA3937_RS19790	0.48	-1.3
4,507,518	-		DDA3937_RS19790	0.48	-0.2
4,507,518	-		DDA3937_RS19790	0.48	-0.8
4,507,518	-		DDA3937_RS19790	0.48	-1.6
4,507,518	-		DDA3937_RS19790	0.48	-0.2
4,507,518	-		DDA3937_RS19790	0.48	-3.0
4,507,518	-		DDA3937_RS19790	0.48	-0.2
4,507,518	-		DDA3937_RS19790	0.48	-0.6
4,507,518	-		DDA3937_RS19790	0.48	+0.2
4,507,518	-		DDA3937_RS19790	0.48	-1.3
4,507,518	-		DDA3937_RS19790	0.48	-0.8
4,507,518	-		DDA3937_RS19790	0.48	+1.3
4,507,518	-		DDA3937_RS19790	0.48	+0.2
4,507,519	+		DDA3937_RS19790	0.48	+0.4
4,507,519	+		DDA3937_RS19790	0.48	+1.3
4,507,519	+		DDA3937_RS19790	0.48	+1.4
4,507,519	+		DDA3937_RS19790	0.48	-2.5
4,507,519	+		DDA3937_RS19790	0.48	-0.1
4,507,520	-		DDA3937_RS19790	0.48	-1.4
4,507,520	-		DDA3937_RS19790	0.48	-0.8
4,507,520	-		DDA3937_RS19790	0.48	-1.0
4,507,549	+		DDA3937_RS19790	0.51	-1.2
4,507,550	-		DDA3937_RS19790	0.51	-2.8
4,507,550	-		DDA3937_RS19790	0.51	+0.2
4,507,560	+		DDA3937_RS19790	0.53	-0.5
4,507,591	+		DDA3937_RS19790	0.56	-1.0
4,507,591	+		DDA3937_RS19790	0.56	-1.8
4,507,591	+		DDA3937_RS19790	0.56	-1.9
4,507,591	+		DDA3937_RS19790	0.56	-0.3
4,507,591	+		DDA3937_RS19790	0.56	-2.2
4,507,592	-		DDA3937_RS19790	0.57	-1.6
4,507,592	-		DDA3937_RS19790	0.57	-2.1
4,507,592	-		DDA3937_RS19790	0.57	-1.2
4,507,595	+		DDA3937_RS19790	0.57	-2.5
4,507,595	+		DDA3937_RS19790	0.57	-1.6
4,507,596	-		DDA3937_RS19790	0.57	-0.2
4,507,596	-		DDA3937_RS19790	0.57	-1.0
4,507,596	-		DDA3937_RS19790	0.57	+0.4
4,507,596	-		DDA3937_RS19790	0.57	+0.3
4,507,596	-		DDA3937_RS19790	0.57	+1.0
4,507,666	+		DDA3937_RS19790	0.66	+0.0
4,507,667	-		DDA3937_RS19790	0.66	-1.6
4,507,667	-		DDA3937_RS19790	0.66	-1.2
4,507,667	-		DDA3937_RS19790	0.66	-2.3
4,507,667	-		DDA3937_RS19790	0.66	-3.7
4,507,699	+		DDA3937_RS19790	0.70	-2.4
4,507,775	+		DDA3937_RS19790	0.79	+1.3
4,507,775	+		DDA3937_RS19790	0.79	-2.1
4,507,775	+		DDA3937_RS19790	0.79	-0.3
4,507,775	+		DDA3937_RS19790	0.79	-1.6
4,507,775	+		DDA3937_RS19790	0.79	-0.6
4,507,775	+		DDA3937_RS19790	0.79	+0.7
4,507,776	-		DDA3937_RS19790	0.79	+4.6
4,507,776	-		DDA3937_RS19790	0.79	-2.3
4,507,921	+				+2.7
4,507,922	-				-2.6
4,507,935	+				+0.1
4,507,936	-				-1.0
4,507,943	+				-0.6
4,507,943	+				-0.3
4,507,943	+				-1.5
4,507,943	+				-1.7
4,507,943	+				+0.4
4,507,943	+				-3.2
4,507,943	+				-1.0
4,507,943	+				-0.7
4,507,943	+				+0.9
4,507,944	-				-2.2
4,507,944	-				-1.5
4,507,944	-				-1.3
4,507,944	-				+3.4
4,507,944	-				-0.1
4,507,944	-				-0.6
4,507,997	+				+0.9
4,507,998	-				+2.6
4,507,998	-				-1.3
4,507,998	-				-1.9
4,507,998	-				-1.4
4,507,999	+				-0.8
4,507,999	+				+2.7
4,508,000	-				-2.5
4,508,052	+				+2.5
4,508,148	-		DDA3937_RS19795	0.12	-1.1
4,508,196	-		DDA3937_RS19795	0.18	+0.0
4,508,202	+		DDA3937_RS19795	0.19	-1.2
4,508,335	-		DDA3937_RS19795	0.38	-1.4
4,508,422	+		DDA3937_RS19795	0.51	+1.0
4,508,455	+		DDA3937_RS19795	0.56	-1.4
4,508,455	+		DDA3937_RS19795	0.56	-1.9
4,508,566	+		DDA3937_RS19795	0.71	+0.9
4,508,566	+		DDA3937_RS19795	0.71	+0.7
4,508,566	+		DDA3937_RS19795	0.71	-1.0
4,508,566	+		DDA3937_RS19795	0.71	+0.5
4,508,566	+		DDA3937_RS19795	0.71	+0.2
4,508,566	+		DDA3937_RS19795	0.71	-2.6
4,508,566	+		DDA3937_RS19795	0.71	-0.1
4,508,566	+		DDA3937_RS19795	0.71	+0.3
4,508,567	-		DDA3937_RS19795	0.72	-0.9
4,508,567	-		DDA3937_RS19795	0.72	+2.8
4,508,567	-		DDA3937_RS19795	0.72	-1.0
4,508,567	-		DDA3937_RS19795	0.72	+1.5
4,508,624	+		DDA3937_RS19795	0.80	-1.7
4,508,677	+		DDA3937_RS19795	0.87	+0.1
4,508,677	+		DDA3937_RS19795	0.87	-0.2
4,508,678	-		DDA3937_RS19795	0.87	-0.4
4,508,681	-		DDA3937_RS19795	0.88	-0.3
4,508,700	-				+0.7
4,508,754	+				+2.0
4,508,754	+				+0.4
4,508,754	+				-0.3
4,508,755	-				+0.2
4,508,755	-				-1.8
4,508,758	+				-2.0
4,508,759	-				-2.4
4,508,759	-				+2.0
4,508,759	-				+1.0
4,508,765	+				-1.4
4,508,765	+				-1.7
4,508,765	+				+2.3
4,508,797	-				+0.4
4,508,813	+				+0.8
4,508,841	-				+0.3
4,508,841	-				+0.5
4,508,841	-				-2.6
4,509,493	-				+0.4
4,509,548	+				-2.2
4,509,549	-				-0.4
4,509,552	+				-0.6
4,509,552	+				+1.8
4,509,552	+				-1.1
4,509,552	+				-1.3
4,509,552	+				+0.2
4,509,552	+				-0.4
4,509,552	+				+0.5
4,509,552	+				-0.2
4,509,552	+				-1.7
4,509,552	+				-1.9
4,509,552	+				-2.5
4,509,552	+				-1.9
4,509,552	+				-0.6
4,509,553	-				-0.4
4,509,553	-				-1.0
4,509,555	+				-0.2
4,509,555	+				-0.4
4,509,695	+		DDA3937_RS23365	0.65	+1.6
4,509,695	+		DDA3937_RS23365	0.65	-2.1
4,509,695	+		DDA3937_RS23365	0.65	-0.0
4,509,695	+		DDA3937_RS23365	0.65	-1.4
4,509,695	+		DDA3937_RS23365	0.65	-0.4
4,509,696	-		DDA3937_RS23365	0.66	-1.4
4,509,696	-		DDA3937_RS23365	0.66	-0.8