Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19740

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,492,810	+		DDA3937_RS19735	0.29	-0.0
4,492,810	+		DDA3937_RS19735	0.29	+1.3
4,492,810	+		DDA3937_RS19735	0.29	-1.3
4,492,810	+		DDA3937_RS19735	0.29	-2.0
4,492,810	+		DDA3937_RS19735	0.29	-2.7
4,492,811	-		DDA3937_RS19735	0.29	-1.9
4,492,811	-		DDA3937_RS19735	0.29	-0.8
4,492,811	-		DDA3937_RS19735	0.29	-0.7
4,492,811	-		DDA3937_RS19735	0.29	-0.9
4,492,818	+		DDA3937_RS19735	0.30	-3.3
4,492,818	+		DDA3937_RS19735	0.30	-1.7
4,492,818	+		DDA3937_RS19735	0.30	-0.2
4,492,818	+		DDA3937_RS19735	0.30	-1.6
4,492,818	+		DDA3937_RS19735	0.30	+0.3
4,492,818	+		DDA3937_RS19735	0.30	-1.6
4,492,819	-		DDA3937_RS19735	0.30	-1.5
4,492,819	-		DDA3937_RS19735	0.30	+1.0
4,492,819	-		DDA3937_RS19735	0.30	+1.2
4,492,819	-		DDA3937_RS19735	0.30	-1.4
4,492,819	-		DDA3937_RS19735	0.30	-2.0
4,492,819	-		DDA3937_RS19735	0.30	-2.8
4,492,819	-		DDA3937_RS19735	0.30	+1.7
4,492,819	-		DDA3937_RS19735	0.30	-1.3
4,492,819	-		DDA3937_RS19735	0.30	-0.3
4,492,819	-		DDA3937_RS19735	0.30	+0.2
4,492,870	-		DDA3937_RS19735	0.34	-1.6
4,492,899	+		DDA3937_RS19735	0.36	-1.6
4,493,052	+		DDA3937_RS19735	0.48	+0.9
4,493,052	+		DDA3937_RS19735	0.48	-1.6
4,493,052	+		DDA3937_RS19735	0.48	-1.6
4,493,053	-		DDA3937_RS19735	0.48	+0.6
4,493,070	+		DDA3937_RS19735	0.49	-1.3
4,493,070	+		DDA3937_RS19735	0.49	-1.3
4,493,070	+		DDA3937_RS19735	0.49	+1.4
4,493,070	+		DDA3937_RS19735	0.49	+0.9
4,493,070	+				+1.0
4,493,070	+		DDA3937_RS19735	0.49	-0.6
4,493,071	-		DDA3937_RS19735	0.50	-0.5
4,493,071	-		DDA3937_RS19735	0.50	+0.7
4,493,071	-		DDA3937_RS19735	0.50	+1.3
4,493,071	-		DDA3937_RS19735	0.50	+0.4
4,493,071	-		DDA3937_RS19735	0.50	-0.5
4,493,071	-				+2.0
4,493,071	-		DDA3937_RS19735	0.50	+2.6
4,493,071	-		DDA3937_RS19735	0.50	+0.6
4,493,071	-		DDA3937_RS19735	0.50	+0.7
4,493,149	+		DDA3937_RS19735	0.56	-2.1
4,493,150	-		DDA3937_RS19735	0.56	-0.3
4,493,272	-		DDA3937_RS19735	0.65	-0.0
4,493,272	-		DDA3937_RS19735	0.65	-1.0
4,493,283	+		DDA3937_RS19735	0.66	-1.5
4,493,283	+		DDA3937_RS19735	0.66	-1.3
4,493,283	+		DDA3937_RS19735	0.66	-0.1
4,493,283	+		DDA3937_RS19735	0.66	+2.2
4,493,284	-		DDA3937_RS19735	0.66	-2.3
4,493,284	-		DDA3937_RS19735	0.66	-0.0
4,493,284	-				+0.4
4,493,284	-		DDA3937_RS19735	0.66	-1.0
4,493,284	-		DDA3937_RS19735	0.66	-0.6
4,493,284	-		DDA3937_RS19735	0.66	+1.5
4,493,313	+		DDA3937_RS19735	0.68	-0.3
4,493,313	+		DDA3937_RS19735	0.68	-1.2
4,493,314	-		DDA3937_RS19735	0.68	-0.4
4,493,335	+		DDA3937_RS19735	0.70	+1.3
4,493,338	+		DDA3937_RS19735	0.70	-1.5
4,493,496	+		DDA3937_RS19735	0.83	-0.5
4,493,496	+		DDA3937_RS19735	0.83	-1.7
4,493,572	+		DDA3937_RS19735	0.89	-1.0
4,493,572	+		DDA3937_RS19735	0.89	-0.8
4,493,711	-				+0.3
4,493,731	+				-1.7
4,493,731	+				-1.2
4,493,731	+				-0.6
4,493,731	+				-1.6
4,493,731	+				-1.7
4,493,731	+				-1.7
4,493,734	+				-2.3
4,493,742	+				-0.6
4,493,742	+				-0.7
4,493,743	-				-2.5
4,493,749	-				-1.2
4,493,793	+				+2.4
4,493,794	-				-0.9
4,493,886	+				+0.9
4,493,886	+				-0.2
4,493,886	+				+2.5
4,493,887	-				-0.5
4,494,059	+		DDA3937_RS19740	0.17	-0.9
4,494,124	+		DDA3937_RS19740	0.20	+0.2
4,494,124	+		DDA3937_RS19740	0.20	+0.2
4,494,124	+		DDA3937_RS19740	0.20	-2.5
4,494,125	-		DDA3937_RS19740	0.20	-2.3
4,494,201	+		DDA3937_RS19740	0.24	-3.5
4,494,201	+		DDA3937_RS19740	0.24	+0.4
4,494,202	-		DDA3937_RS19740	0.24	-2.2
4,494,202	-		DDA3937_RS19740	0.24	-1.3
4,494,202	-		DDA3937_RS19740	0.24	+0.4
4,494,290	+		DDA3937_RS19740	0.28	+0.2
4,494,291	-		DDA3937_RS19740	0.28	-1.5
4,494,291	-		DDA3937_RS19740	0.28	-1.6
4,494,291	-		DDA3937_RS19740	0.28	-0.2
4,494,374	+		DDA3937_RS19740	0.33	+2.2
4,494,375	-		DDA3937_RS19740	0.33	-1.7
4,494,375	-		DDA3937_RS19740	0.33	-1.2
4,494,796	-		DDA3937_RS19740	0.54	-1.6
4,494,796	-		DDA3937_RS19740	0.54	-0.5
4,494,796	-		DDA3937_RS19740	0.54	+1.1
4,494,847	+		DDA3937_RS19740	0.57	-0.4
4,494,847	+		DDA3937_RS19740	0.57	-1.6
4,494,848	-		DDA3937_RS19740	0.57	+0.8
4,494,848	-		DDA3937_RS19740	0.57	-0.8
4,494,850	+		DDA3937_RS19740	0.57	+1.4
4,494,850	+		DDA3937_RS19740	0.57	-1.6
4,494,851	-		DDA3937_RS19740	0.57	-2.9
4,494,851	-		DDA3937_RS19740	0.57	-1.5
4,494,851	-		DDA3937_RS19740	0.57	-1.0
4,494,851	-		DDA3937_RS19740	0.57	-0.8
4,495,046	-		DDA3937_RS19740	0.67	+1.2
4,495,054	+		DDA3937_RS19740	0.67	+0.0
4,495,055	-		DDA3937_RS19740	0.67	+0.4
4,495,181	-		DDA3937_RS19740	0.73	+0.6
4,495,181	-		DDA3937_RS19740	0.73	-2.4
4,495,181	-		DDA3937_RS19740	0.73	-1.6
4,495,246	+		DDA3937_RS19740	0.77	+0.1
4,495,246	+		DDA3937_RS19740	0.77	+0.6
4,495,247	-		DDA3937_RS19740	0.77	-0.5
4,495,247	-		DDA3937_RS19740	0.77	-2.3
4,495,300	+		DDA3937_RS19740	0.80	+2.3
4,495,301	-		DDA3937_RS19740	0.80	-0.6
4,495,332	+		DDA3937_RS19740	0.81	-0.4
4,495,333	-		DDA3937_RS19740	0.81	-3.3
4,495,440	-		DDA3937_RS19740	0.87	+1.1
4,495,498	+		DDA3937_RS19740	0.90	+0.5
4,495,528	+				-1.0
4,495,529	-				-0.2
4,495,668	+				-1.4
4,495,668	+				-2.0
4,495,668	+				-0.3
4,495,668	+				-0.7
4,495,669	-				+1.7
4,495,669	-				-1.0
4,495,669	-				+0.4
4,495,669	-				-0.8
4,495,722	+				-2.9
4,495,722	+				-2.5
4,495,723	-				-1.0
4,495,794	+				-2.3
4,495,794	+				-3.2
4,495,794	+				-1.3
4,495,795	-				-2.4
4,495,795	-				-0.4
4,495,830	+				-2.3
4,495,915	+				+1.6
4,495,927	+		DDA3937_RS19745	0.10	-0.4
4,496,025	+		DDA3937_RS19745	0.15	-1.5
4,496,025	+		DDA3937_RS19745	0.15	+1.5
4,496,025	+		DDA3937_RS19745	0.15	+0.8
4,496,026	-		DDA3937_RS19745	0.15	-1.5
4,496,037	+		DDA3937_RS19745	0.15	+0.3
4,496,037	+		DDA3937_RS19745	0.15	-0.6
4,496,226	+		DDA3937_RS19745	0.24	+1.0
4,496,226	+		DDA3937_RS19745	0.24	-1.1
4,496,226	+		DDA3937_RS19745	0.24	-2.8
4,496,227	-		DDA3937_RS19745	0.24	+0.1
4,496,229	+		DDA3937_RS19745	0.24	+0.0
4,496,229	+		DDA3937_RS19745	0.24	-1.8
4,496,229	+		DDA3937_RS19745	0.24	+2.7
4,496,229	+		DDA3937_RS19745	0.24	-0.6
4,496,229	+				-0.0
4,496,229	+		DDA3937_RS19745	0.24	+0.1
4,496,230	-		DDA3937_RS19745	0.24	+0.5
4,496,230	-		DDA3937_RS19745	0.24	-0.3
4,496,343	+		DDA3937_RS19745	0.29	-0.3
4,496,343	+		DDA3937_RS19745	0.29	-1.5
4,496,344	-		DDA3937_RS19745	0.29	-0.6
4,496,344	-		DDA3937_RS19745	0.29	+0.4
4,496,344	-		DDA3937_RS19745	0.29	-0.3
4,496,344	-		DDA3937_RS19745	0.29	+0.8
4,496,349	+		DDA3937_RS19745	0.30	+1.6
4,496,349	+		DDA3937_RS19745	0.30	+3.9
4,496,349	+		DDA3937_RS19745	0.30	-2.4
4,496,350	-		DDA3937_RS19745	0.30	+1.2
4,496,350	-		DDA3937_RS19745	0.30	-1.2
4,496,350	-		DDA3937_RS19745	0.30	-1.0
4,496,350	-		DDA3937_RS19745	0.30	-1.8
4,496,382	+		DDA3937_RS19745	0.31	+0.5
4,496,383	-		DDA3937_RS19745	0.31	-0.4
4,496,383	-		DDA3937_RS19745	0.31	-0.6
4,496,412	+		DDA3937_RS19745	0.32	-0.6
4,496,412	+		DDA3937_RS19745	0.32	+0.3
4,496,412	+		DDA3937_RS19745	0.32	+2.3
4,496,412	+		DDA3937_RS19745	0.32	-0.6
4,496,413	-		DDA3937_RS19745	0.33	+0.4
4,496,413	-		DDA3937_RS19745	0.33	+1.6
4,496,413	-		DDA3937_RS19745	0.33	-0.8
4,496,451	+		DDA3937_RS19745	0.34	-1.0
4,496,451	+		DDA3937_RS19745	0.34	-0.8
4,496,452	-		DDA3937_RS19745	0.34	+1.6
4,496,565	+		DDA3937_RS19745	0.39	-0.7
4,496,610	+		DDA3937_RS19745	0.42	-2.6
4,496,611	-		DDA3937_RS19745	0.42	+2.9
4,496,611	-		DDA3937_RS19745	0.42	+0.1
4,496,643	+		DDA3937_RS19745	0.43	-0.8
4,496,643	+		DDA3937_RS19745	0.43	-1.7
4,496,644	-		DDA3937_RS19745	0.43	-1.8
4,496,652	+		DDA3937_RS19745	0.43	-1.8