Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19610

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,459,283	+		DDA3937_RS19605	0.73	-1.3
4,459,283	+		DDA3937_RS19605	0.73	-1.5
4,459,284	-		DDA3937_RS19605	0.73	+1.3
4,459,284	-		DDA3937_RS19605	0.73	-1.0
4,459,284	-		DDA3937_RS19605	0.73	-1.0
4,459,307	+		DDA3937_RS19605	0.76	-1.2
4,459,308	-		DDA3937_RS19605	0.76	+0.7
4,459,308	-		DDA3937_RS19605	0.76	-1.2
4,459,439	+				-2.0
4,459,439	+				-0.5
4,459,440	-				-1.5
4,459,454	+				-0.8
4,459,455	-				-1.2
4,459,455	-				-0.6
4,459,530	+				-2.0
4,459,605	+				-0.3
4,459,605	+				-1.2
4,459,605	+				-1.6
4,459,613	+				+0.1
4,459,613	+				-1.7
4,459,636	-				-0.7
4,459,720	+				+1.0
4,459,721	-				-1.5
4,459,850	-				-2.2
4,459,888	+				-2.3
4,460,024	+				-3.3
4,460,024	+				-0.3
4,460,025	+				+0.7
4,460,026	+				-1.9
4,460,026	+				-0.7
4,460,026	+				-0.2
4,460,026	+				-1.0
4,460,123	-				-0.7
4,460,123	-				-3.5
4,460,123	-				-0.5
4,460,167	+				-2.2
4,460,167	+				+1.8
4,460,167	+				-0.3
4,460,168	-				-1.3
4,460,168	-				-0.2
4,460,168	-				-0.6
4,460,192	-				+2.7
4,460,220	-				+0.8
4,460,225	-				+1.2
4,460,225	-				-0.8
4,460,243	+				+0.5
4,460,243	+				+1.5
4,460,243	+				-2.7
4,460,243	+				-3.0
4,460,244	-				-2.7
4,460,244	-				+0.7
4,460,244	-				+0.4
4,460,244	-				+0.8
4,460,244	-				+0.1
4,460,246	+				-0.4
4,460,246	+				+0.6
4,460,247	-				-1.4
4,460,247	-				+0.1
4,460,253	-				-2.5
4,460,253	-				-1.3
4,460,253	-				-1.3
4,460,258	+				-1.2
4,460,259	-				+0.4
4,460,259	-				-1.2
4,460,260	+				-1.8
4,460,261	-				+1.7
4,460,268	+				-1.0
4,460,268	+				+0.7
4,460,269	-				-0.3
4,460,274	+				-0.8
4,460,274	+				-0.4
4,460,274	+				-3.1
4,460,274	+				-3.0
4,460,274	+				-1.5
4,460,288	+				+0.7
4,460,288	+				-1.3
4,460,288	+				-0.6
4,460,288	+				-2.5
4,460,288	+				-1.5
4,460,288	+				-2.2
4,460,289	-				-2.1
4,460,289	-				-0.3
4,460,289	-				-1.2
4,460,298	+				-0.3
4,460,298	+				-0.8
4,460,320	+				-1.2
4,460,320	+				-1.0
4,460,321	-				-1.4
4,460,321	-				-3.4
4,460,321	-				-1.2
4,460,350	+				-0.6
4,460,350	+				-0.0
4,460,351	-				-2.7
4,460,369	+				-2.7
4,460,369	+				-1.5
4,460,399	+				+1.2
4,460,399	+				+0.7
4,460,399	+				-1.2
4,460,400	-				+0.4
4,460,400	-				+0.4
4,460,407	+				-1.8
4,460,407	+				-0.5
4,460,408	-				-1.6
4,460,484	+		DDA3937_RS19610	0.13	+0.4
4,460,484	+		DDA3937_RS19610	0.13	+0.9
4,460,484	+		DDA3937_RS19610	0.13	-1.1
4,460,484	+		DDA3937_RS19610	0.13	-0.9
4,460,484	+		DDA3937_RS19610	0.13	+2.6
4,460,484	+		DDA3937_RS19610	0.13	-1.9
4,460,485	-		DDA3937_RS19610	0.13	-0.9
4,460,485	-		DDA3937_RS19610	0.13	-0.1
4,460,485	-		DDA3937_RS19610	0.13	-0.8
4,460,485	-		DDA3937_RS19610	0.13	-4.4
4,460,485	-		DDA3937_RS19610	0.13	+1.9
4,460,488	+		DDA3937_RS19610	0.13	-0.6
4,460,488	+		DDA3937_RS19610	0.13	-0.3
4,460,488	+		DDA3937_RS19610	0.13	-1.3
4,460,488	+		DDA3937_RS19610	0.13	-0.8
4,460,488	+		DDA3937_RS19610	0.13	-1.0
4,460,488	+		DDA3937_RS19610	0.13	-0.1
4,460,488	+		DDA3937_RS19610	0.13	-2.8
4,460,488	+		DDA3937_RS19610	0.13	+0.4
4,460,488	+		DDA3937_RS19610	0.13	-2.3
4,460,488	+		DDA3937_RS19610	0.13	-0.2
4,460,488	+		DDA3937_RS19610	0.13	-1.7
4,460,488	+		DDA3937_RS19610	0.13	-3.8
4,460,488	+		DDA3937_RS19610	0.13	-0.3
4,460,489	-		DDA3937_RS19610	0.13	-1.7
4,460,489	-		DDA3937_RS19610	0.13	+2.5
4,460,489	-		DDA3937_RS19610	0.13	-1.3
4,460,489	-		DDA3937_RS19610	0.13	-0.6
4,460,489	-		DDA3937_RS19610	0.13	+2.0
4,460,489	-		DDA3937_RS19610	0.13	-1.5
4,460,489	-		DDA3937_RS19610	0.13	-2.5
4,460,489	-		DDA3937_RS19610	0.13	+0.6
4,460,489	-		DDA3937_RS19610	0.13	-2.8
4,460,489	-		DDA3937_RS19610	0.13	-1.6
4,460,489	-		DDA3937_RS19610	0.13	-0.9
4,460,489	-		DDA3937_RS19610	0.13	-1.8
4,460,615	+		DDA3937_RS19610	0.21	-2.3
4,460,615	+		DDA3937_RS19610	0.21	-2.6
4,460,616	-		DDA3937_RS19610	0.21	-0.7
4,460,616	-		DDA3937_RS19610	0.21	+2.3
4,460,733	+		DDA3937_RS19610	0.28	-2.5
4,460,734	-		DDA3937_RS19610	0.28	-1.2
4,460,756	+		DDA3937_RS19610	0.29	-1.0
4,460,756	+		DDA3937_RS19610	0.29	-1.4
4,460,757	-		DDA3937_RS19610	0.29	-2.5
4,460,938	+		DDA3937_RS19610	0.41	-2.2
4,460,939	-		DDA3937_RS19610	0.41	-2.6
4,460,939	-		DDA3937_RS19610	0.41	+1.3
4,460,939	-		DDA3937_RS19610	0.41	+0.7
4,460,939	-		DDA3937_RS19610	0.41	-1.1
4,460,939	-		DDA3937_RS19610	0.41	-1.4
4,461,133	+		DDA3937_RS19610	0.53	-0.9
4,461,174	+		DDA3937_RS19610	0.55	-1.6
4,461,175	-		DDA3937_RS19610	0.55	-1.1
4,461,178	+		DDA3937_RS19610	0.55	-0.3
4,461,179	-		DDA3937_RS19610	0.55	-0.2
4,461,284	-		DDA3937_RS19610	0.62	-2.0
4,461,293	-		DDA3937_RS19610	0.62	-2.3
4,461,293	-		DDA3937_RS19610	0.62	-1.8
4,461,293	-		DDA3937_RS19610	0.62	-0.4
4,461,293	-		DDA3937_RS19610	0.62	-0.0
4,461,538	+		DDA3937_RS19610	0.78	+0.4
4,461,587	-		DDA3937_RS19610	0.81	-1.3
4,461,587	-		DDA3937_RS19610	0.81	-1.2
4,461,587	-		DDA3937_RS19610	0.81	-0.6
4,461,775	+				+0.5
4,461,775	+				+0.2
4,461,775	+				-0.3
4,461,776	-				-1.6
4,461,776	-				+1.4
4,461,776	-				+3.0
4,461,776	-				-2.9
4,461,776	-				-1.4
4,461,828	+				+0.2
4,461,847	+				+1.0
4,461,847	+				-2.0
4,461,848	-				+0.0
4,461,848	-				-1.3
4,461,898	+				-1.9
4,461,898	+				-2.5
4,461,980	+				+0.4
4,462,016	-				+0.9
4,462,115	-				+1.0
4,462,605	-		DDA3937_RS19615	0.42	-2.7
4,462,624	+		DDA3937_RS19615	0.43	-1.9
4,462,664	+		DDA3937_RS19615	0.46	-0.3
4,462,716	-		DDA3937_RS19615	0.50	-1.5
4,462,818	-		DDA3937_RS19615	0.57	-2.5