Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19395

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,409,818	+		DDA3937_RS19390	0.30	+0.4
4,409,818	+		DDA3937_RS19390	0.30	+0.3
4,409,818	+		DDA3937_RS19390	0.30	-1.0
4,409,818	+		DDA3937_RS19390	0.30	-1.0
4,409,818	+		DDA3937_RS19390	0.30	-0.5
4,409,818	+		DDA3937_RS19390	0.30	-0.7
4,409,818	+		DDA3937_RS19390	0.30	+0.6
4,409,819	-		DDA3937_RS19390	0.31	+0.7
4,409,819	-		DDA3937_RS19390	0.31	+0.3
4,409,819	-		DDA3937_RS19390	0.31	-0.3
4,409,819	-		DDA3937_RS19390	0.31	+0.2
4,409,819	-		DDA3937_RS19390	0.31	-0.9
4,409,819	-		DDA3937_RS19390	0.31	-0.1
4,409,819	-		DDA3937_RS19390	0.31	-0.1
4,409,819	-		DDA3937_RS19390	0.31	-1.3
4,409,819	-		DDA3937_RS19390	0.31	-1.5
4,409,819	-		DDA3937_RS19390	0.31	-1.5
4,409,819	-		DDA3937_RS19390	0.31	-0.8
4,409,819	-		DDA3937_RS19390	0.31	-0.4
4,409,820	+		DDA3937_RS19390	0.31	-1.2
4,409,820	+		DDA3937_RS19390	0.31	+0.4
4,409,820	+		DDA3937_RS19390	0.31	-0.9
4,409,820	+		DDA3937_RS19390	0.31	-1.7
4,409,820	+		DDA3937_RS19390	0.31	-0.4
4,409,820	+		DDA3937_RS19390	0.31	+0.6
4,409,820	+		DDA3937_RS19390	0.31	-0.0
4,409,820	+		DDA3937_RS19390	0.31	-0.5
4,409,820	+		DDA3937_RS19390	0.31	+0.1
4,409,820	+		DDA3937_RS19390	0.31	-1.2
4,409,820	+		DDA3937_RS19390	0.31	-0.0
4,409,820	+		DDA3937_RS19390	0.31	+0.4
4,409,820	+		DDA3937_RS19390	0.31	-0.3
4,409,820	+		DDA3937_RS19390	0.31	-0.5
4,409,821	-		DDA3937_RS19390	0.31	-0.6
4,409,821	-		DDA3937_RS19390	0.31	+0.7
4,409,821	-				+2.2
4,409,821	-		DDA3937_RS19390	0.31	-1.0
4,409,821	-		DDA3937_RS19390	0.31	-3.5
4,409,821	-		DDA3937_RS19390	0.31	-4.1
4,409,821	-		DDA3937_RS19390	0.31	-0.8
4,409,821	-		DDA3937_RS19390	0.31	-0.8
4,409,821	-		DDA3937_RS19390	0.31	-0.9
4,409,821	-		DDA3937_RS19390	0.31	-0.6
4,409,821	-				+0.4
4,409,821	-		DDA3937_RS19390	0.31	-0.8
4,409,827	+		DDA3937_RS19390	0.31	+1.2
4,409,828	-		DDA3937_RS19390	0.31	-3.1
4,409,900	+		DDA3937_RS19390	0.37	-0.8
4,409,901	-		DDA3937_RS19390	0.37	+0.7
4,409,901	-		DDA3937_RS19390	0.37	+1.1
4,409,901	-		DDA3937_RS19390	0.37	-0.1
4,409,905	+		DDA3937_RS19390	0.37	+1.0
4,409,905	+		DDA3937_RS19390	0.37	-2.1
4,410,036	-		DDA3937_RS19390	0.48	-0.1
4,410,112	+		DDA3937_RS19390	0.54	-1.8
4,410,113	-		DDA3937_RS19390	0.54	-0.8
4,410,270	-		DDA3937_RS19390	0.67	-0.3
4,410,358	+		DDA3937_RS19390	0.74	-1.2
4,410,358	+		DDA3937_RS19390	0.74	-0.4
4,410,358	+		DDA3937_RS19390	0.74	-2.9
4,410,359	-		DDA3937_RS19390	0.74	-1.3
4,410,359	-		DDA3937_RS19390	0.74	+0.1
4,410,359	-		DDA3937_RS19390	0.74	-0.6
4,410,361	+		DDA3937_RS19390	0.74	-0.6
4,410,362	-		DDA3937_RS19390	0.74	+0.6
4,410,362	-		DDA3937_RS19390	0.74	-0.1
4,410,362	-		DDA3937_RS19390	0.74	-0.6
4,410,445	+		DDA3937_RS19390	0.81	+1.6
4,410,445	+		DDA3937_RS19390	0.81	-2.0
4,410,445	+		DDA3937_RS19390	0.81	-1.1
4,410,445	+		DDA3937_RS19390	0.81	+1.6
4,410,446	-		DDA3937_RS19390	0.81	-1.2
4,410,469	+		DDA3937_RS19390	0.82	-2.5
4,410,469	+		DDA3937_RS19390	0.82	+1.3
4,410,469	+		DDA3937_RS19390	0.82	-0.1
4,410,469	+		DDA3937_RS19390	0.82	-0.0
4,410,469	+		DDA3937_RS19390	0.82	+0.3
4,410,469	+		DDA3937_RS19390	0.82	-3.6
4,410,469	+		DDA3937_RS19390	0.82	-1.0
4,410,469	+		DDA3937_RS19390	0.82	-0.6
4,410,470	-		DDA3937_RS19390	0.83	-1.9
4,410,470	-		DDA3937_RS19390	0.83	-0.2
4,410,470	-		DDA3937_RS19390	0.83	-1.7
4,410,470	-				-0.0
4,410,470	-		DDA3937_RS19390	0.83	-0.8
4,410,470	-		DDA3937_RS19390	0.83	+0.1
4,410,470	-		DDA3937_RS19390	0.83	+0.1
4,410,498	-		DDA3937_RS19390	0.85	-1.2
4,410,669	+				-0.5
4,410,670	-				-2.3
4,410,714	+				+0.9
4,410,714	+				-0.2
4,410,714	+				-1.4
4,410,715	-				+0.2
4,410,715	-				-0.6
4,410,717	+				-0.1
4,410,718	-				-1.7
4,410,895	+		DDA3937_RS19395	0.23	-0.6
4,410,895	+		DDA3937_RS19395	0.23	-1.9
4,410,895	+		DDA3937_RS19395	0.23	-1.2
4,410,895	+		DDA3937_RS19395	0.23	-3.1
4,410,937	-		DDA3937_RS19395	0.30	-0.5
4,411,139	+		DDA3937_RS19395	0.64	-3.5
4,411,139	+		DDA3937_RS19395	0.64	+0.7
4,411,139	+		DDA3937_RS19395	0.64	-0.6
4,411,140	-		DDA3937_RS19395	0.64	-1.7
4,411,149	-		DDA3937_RS19395	0.66	-2.5
4,411,250	+		DDA3937_RS19395	0.83	-1.2
4,411,250	+		DDA3937_RS19395	0.83	-3.0
4,411,251	-		DDA3937_RS19395	0.83	+1.6
4,411,251	-		DDA3937_RS19395	0.83	-1.5
4,411,251	-		DDA3937_RS19395	0.83	-2.0
4,411,288	+		DDA3937_RS19395	0.89	-0.9
4,411,288	+		DDA3937_RS19395	0.89	-2.9
4,411,288	+		DDA3937_RS19395	0.89	-0.9
4,411,289	-		DDA3937_RS19395	0.90	-1.0
4,411,302	+				-2.0
4,411,303	-				-1.8
4,411,303	-				+0.4
4,411,306	+				-0.6
4,411,306	+				-0.3
4,411,307	-				-2.2
4,411,307	-				-3.0
4,411,313	+				-1.8
4,411,342	+				-1.8
4,411,342	+				-1.7
4,411,343	-				-1.4
4,411,353	+				-2.2
4,411,354	-				-2.3
4,411,354	-				-0.0
4,411,361	-				-0.0
4,411,361	-				+0.1
4,411,411	+				-1.0
4,411,411	+				+1.0
4,411,411	+				+1.0
4,411,411	+				-0.7
4,411,411	+				-0.0
4,411,411	+				-0.8
4,411,412	-				-1.5
4,411,412	-				-0.7
4,411,412	-				+0.4
4,411,412	-				-1.6
4,411,412	-				+0.3
4,411,412	-				-1.2
4,411,412	-				-1.4
4,411,412	-				+0.5
4,411,412	-				-1.2
4,411,441	+				+1.0
4,411,441	+				-1.5
4,411,441	+				+0.4
4,411,442	-				-0.2
4,411,442	-				-0.2
4,411,447	-				+1.4
4,411,447	-				-1.3
4,411,496	-				-1.6
4,411,511	+				+3.0
4,411,511	+				+1.5
4,411,512	-				-1.1
4,411,512	-				+0.9
4,411,512	-				-0.5
4,411,596	+		DDA3937_RS19400	0.52	-1.0
4,411,596	+		DDA3937_RS19400	0.52	-2.0
4,411,596	+		DDA3937_RS19400	0.52	+0.2
4,411,596	+		DDA3937_RS19400	0.52	-0.7
4,411,596	+		DDA3937_RS19400	0.52	+0.5
4,411,596	+		DDA3937_RS19400	0.52	-0.7
4,411,596	+		DDA3937_RS19400	0.52	-0.6
4,411,597	-		DDA3937_RS19400	0.53	-1.0
4,411,597	-		DDA3937_RS19400	0.53	+0.8
4,411,634	+				-0.0
4,411,758	+				+1.4
4,411,758	+				-2.3
4,411,816	+				-0.3
4,411,817	-				-0.7
4,411,817	-				+0.0
4,411,900	+				-1.3
4,411,900	+				-1.4
4,411,900	+				-0.6
4,411,900	+				+0.6
4,411,901	-				-0.3
4,411,901	-				+1.2
4,411,901	-				+2.5
4,411,901	-				+2.2
4,411,901	-				-1.7
4,411,901	-				+1.2
4,411,901	-				+0.1
4,412,152	+		DDA3937_RS19405	0.22	+0.2
4,412,152	+		DDA3937_RS19405	0.22	-0.5
4,412,152	+		DDA3937_RS19405	0.22	-0.4
4,412,152	+		DDA3937_RS19405	0.22	-1.2
4,412,153	-		DDA3937_RS19405	0.22	-1.3
4,412,221	-		DDA3937_RS19405	0.26	-1.8
4,412,223	+		DDA3937_RS19405	0.26	-1.5
4,412,224	-		DDA3937_RS19405	0.26	-1.3
4,412,224	-				+1.6
4,412,232	+		DDA3937_RS19405	0.26	-0.6
4,412,233	-		DDA3937_RS19405	0.26	-0.2
4,412,239	-		DDA3937_RS19405	0.27	+0.4
4,412,239	-		DDA3937_RS19405	0.27	+0.4
4,412,242	+		DDA3937_RS19405	0.27	+0.0
4,412,242	+		DDA3937_RS19405	0.27	-0.7
4,412,242	+		DDA3937_RS19405	0.27	-0.1
4,412,242	+		DDA3937_RS19405	0.27	-1.2
4,412,242	+		DDA3937_RS19405	0.27	-1.5
4,412,243	-		DDA3937_RS19405	0.27	-0.8
4,412,243	-		DDA3937_RS19405	0.27	+0.8
4,412,243	-		DDA3937_RS19405	0.27	-1.0
4,412,267	-		DDA3937_RS19405	0.28	+1.0