Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19015

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,342,047	+		DDA3937_RS19010	0.21	-0.8
4,342,047	+		DDA3937_RS19010	0.21	+1.4
4,342,047	+		DDA3937_RS19010	0.21	-1.8
4,342,048	-		DDA3937_RS19010	0.21	+1.8
4,342,048	-		DDA3937_RS19010	0.21	-1.6
4,342,048	-		DDA3937_RS19010	0.21	+0.4
4,342,048	-		DDA3937_RS19010	0.21	-0.3
4,342,060	-		DDA3937_RS19010	0.22	-2.7
4,342,113	+		DDA3937_RS19010	0.27	-1.0
4,342,113	+		DDA3937_RS19010	0.27	-0.2
4,342,113	+		DDA3937_RS19010	0.27	-1.8
4,342,113	+		DDA3937_RS19010	0.27	-0.0
4,342,114	-				+1.0
4,342,114	-		DDA3937_RS19010	0.27	-1.3
4,342,122	-		DDA3937_RS19010	0.28	+0.7
4,342,193	-		DDA3937_RS19010	0.35	+0.8
4,342,270	+		DDA3937_RS19010	0.42	+0.2
4,342,271	-		DDA3937_RS19010	0.42	+1.4
4,342,271	-		DDA3937_RS19010	0.42	-2.3
4,342,321	+		DDA3937_RS19010	0.47	-2.0
4,342,368	+		DDA3937_RS19010	0.51	-1.3
4,342,422	+		DDA3937_RS19010	0.56	+1.5
4,342,422	+		DDA3937_RS19010	0.56	+2.2
4,342,422	+		DDA3937_RS19010	0.56	-1.6
4,342,455	+		DDA3937_RS19010	0.59	-0.3
4,342,455	+		DDA3937_RS19010	0.59	-1.0
4,342,455	+		DDA3937_RS19010	0.59	-1.0
4,342,455	+		DDA3937_RS19010	0.59	-0.1
4,342,455	+		DDA3937_RS19010	0.59	-0.0
4,342,455	+		DDA3937_RS19010	0.59	-0.5
4,342,455	+		DDA3937_RS19010	0.59	-1.6
4,342,455	+		DDA3937_RS19010	0.59	+0.2
4,342,455	+		DDA3937_RS19010	0.59	-1.0
4,342,455	+		DDA3937_RS19010	0.59	-2.1
4,342,455	+		DDA3937_RS19010	0.59	+0.1
4,342,456	-		DDA3937_RS19010	0.59	-0.3
4,342,456	-		DDA3937_RS19010	0.59	-0.0
4,342,456	-		DDA3937_RS19010	0.59	-1.5
4,342,456	-		DDA3937_RS19010	0.59	-2.4
4,342,456	-		DDA3937_RS19010	0.59	-2.5
4,342,456	-		DDA3937_RS19010	0.59	-1.8
4,342,456	-		DDA3937_RS19010	0.59	-1.1
4,342,456	-		DDA3937_RS19010	0.59	+2.6
4,342,458	-		DDA3937_RS19010	0.59	+0.3
4,342,467	+		DDA3937_RS19010	0.60	+0.8
4,342,479	+		DDA3937_RS19010	0.61	+1.6
4,342,479	+		DDA3937_RS19010	0.61	-1.3
4,342,479	+		DDA3937_RS19010	0.61	-0.0
4,342,479	+		DDA3937_RS19010	0.61	-0.2
4,342,479	+		DDA3937_RS19010	0.61	-0.1
4,342,479	+		DDA3937_RS19010	0.61	-1.9
4,342,479	+		DDA3937_RS19010	0.61	+0.9
4,342,479	+		DDA3937_RS19010	0.61	-1.2
4,342,479	+		DDA3937_RS19010	0.61	-0.4
4,342,479	+		DDA3937_RS19010	0.61	-1.5
4,342,479	+		DDA3937_RS19010	0.61	-3.0
4,342,479	+		DDA3937_RS19010	0.61	-0.0
4,342,479	+		DDA3937_RS19010	0.61	+0.5
4,342,479	+		DDA3937_RS19010	0.61	+0.4
4,342,479	+		DDA3937_RS19010	0.61	+0.0
4,342,479	+		DDA3937_RS19010	0.61	-0.8
4,342,479	+		DDA3937_RS19010	0.61	+1.4
4,342,480	-		DDA3937_RS19010	0.61	-1.9
4,342,480	-		DDA3937_RS19010	0.61	-0.8
4,342,480	-		DDA3937_RS19010	0.61	-0.5
4,342,480	-		DDA3937_RS19010	0.61	-1.8
4,342,480	-		DDA3937_RS19010	0.61	-0.9
4,342,480	-		DDA3937_RS19010	0.61	-1.6
4,342,480	-		DDA3937_RS19010	0.61	+2.5
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	-0.6
4,342,480	-		DDA3937_RS19010	0.61	-1.2
4,342,480	-		DDA3937_RS19010	0.61	-2.4
4,342,480	-		DDA3937_RS19010	0.61	-1.2
4,342,480	-		DDA3937_RS19010	0.61	+2.2
4,342,480	-		DDA3937_RS19010	0.61	-1.3
4,342,480	-		DDA3937_RS19010	0.61	+1.0
4,342,480	-		DDA3937_RS19010	0.61	-0.7
4,342,480	-		DDA3937_RS19010	0.61	-1.9
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	+0.8
4,342,480	-				+1.4
4,342,480	-		DDA3937_RS19010	0.61	+0.8
4,342,480	-		DDA3937_RS19010	0.61	-0.9
4,342,480	-		DDA3937_RS19010	0.61	-0.0
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	-0.7
4,342,481	+		DDA3937_RS19010	0.61	-0.0
4,342,481	+		DDA3937_RS19010	0.61	-0.3
4,342,481	+		DDA3937_RS19010	0.61	-3.8
4,342,481	+		DDA3937_RS19010	0.61	-0.3
4,342,482	-		DDA3937_RS19010	0.61	-3.4
4,342,482	-		DDA3937_RS19010	0.61	-1.1
4,342,482	-		DDA3937_RS19010	0.61	-1.2
4,342,482	-		DDA3937_RS19010	0.61	-0.8
4,342,482	-		DDA3937_RS19010	0.61	-3.8
4,342,482	-		DDA3937_RS19010	0.61	-0.7
4,342,482	-		DDA3937_RS19010	0.61	-0.8
4,342,482	-		DDA3937_RS19010	0.61	+1.7
4,342,485	+		DDA3937_RS19010	0.62	+0.9
4,342,485	+		DDA3937_RS19010	0.62	-0.6
4,342,485	+		DDA3937_RS19010	0.62	+1.5
4,342,486	-		DDA3937_RS19010	0.62	+1.4
4,342,486	-		DDA3937_RS19010	0.62	-1.9
4,342,486	-		DDA3937_RS19010	0.62	-0.1
4,342,486	-		DDA3937_RS19010	0.62	-0.0
4,342,486	-		DDA3937_RS19010	0.62	-0.7
4,342,486	-		DDA3937_RS19010	0.62	-0.8
4,342,486	-		DDA3937_RS19010	0.62	+1.0
4,342,486	-		DDA3937_RS19010	0.62	-1.0
4,342,527	+		DDA3937_RS19010	0.65	-0.3
4,342,528	-		DDA3937_RS19010	0.66	+1.2
4,342,581	+		DDA3937_RS19010	0.70	-0.0
4,342,581	+		DDA3937_RS19010	0.70	+1.7
4,342,581	+		DDA3937_RS19010	0.70	-2.3
4,342,581	+		DDA3937_RS19010	0.70	-0.6
4,342,581	+		DDA3937_RS19010	0.70	-1.7
4,342,581	+		DDA3937_RS19010	0.70	-2.1
4,342,582	-		DDA3937_RS19010	0.71	-2.0
4,342,582	-		DDA3937_RS19010	0.71	-0.3
4,342,582	-		DDA3937_RS19010	0.71	-1.7
4,342,582	-		DDA3937_RS19010	0.71	+0.8
4,342,582	-		DDA3937_RS19010	0.71	-0.4
4,342,608	+		DDA3937_RS19010	0.73	-0.2
4,342,608	+		DDA3937_RS19010	0.73	-1.6
4,342,608	+		DDA3937_RS19010	0.73	-3.0
4,342,608	+		DDA3937_RS19010	0.73	-1.3
4,342,608	+		DDA3937_RS19010	0.73	-2.5
4,342,608	+		DDA3937_RS19010	0.73	-1.2
4,342,608	+		DDA3937_RS19010	0.73	+2.0
4,342,608	+		DDA3937_RS19010	0.73	-1.5
4,342,608	+		DDA3937_RS19010	0.73	+0.4
4,342,608	+		DDA3937_RS19010	0.73	-0.8
4,342,608	+		DDA3937_RS19010	0.73	-1.5
4,342,608	+		DDA3937_RS19010	0.73	+1.0
4,342,609	-		DDA3937_RS19010	0.73	-3.3
4,342,609	-		DDA3937_RS19010	0.73	+2.0
4,342,609	-		DDA3937_RS19010	0.73	-0.0
4,342,609	-		DDA3937_RS19010	0.73	-0.3
4,342,609	-		DDA3937_RS19010	0.73	-0.6
4,342,716	+		DDA3937_RS19010	0.83	-0.6
4,342,717	-		DDA3937_RS19010	0.83	-1.3
4,342,717	-		DDA3937_RS19010	0.83	+0.6
4,342,764	+		DDA3937_RS19010	0.87	-0.3
4,342,765	-		DDA3937_RS19010	0.87	+0.6
4,342,782	-		DDA3937_RS19010	0.89	-0.5
4,342,786	+		DDA3937_RS19010	0.89	+1.9
4,342,786	+		DDA3937_RS19010	0.89	-0.1
4,342,786	+		DDA3937_RS19010	0.89	-0.0
4,342,787	-		DDA3937_RS19010	0.89	+0.4
4,342,824	+				+1.0
4,342,825	-				-1.0
4,342,906	-				-0.6
4,342,907	+				+2.6
4,342,908	-				-0.0
4,342,921	-				+3.1
4,342,922	+				-1.8
4,342,930	-				-1.7
4,342,967	+				-3.0
4,342,967	+				+0.7
4,342,968	-				+0.9
4,342,968	-				-2.2
4,342,982	+				-0.3
4,343,015	+				-0.7
4,343,015	+				+0.4
4,343,033	-				-0.8
4,343,211	+		DDA3937_RS19015	0.11	-0.3
4,343,211	+		DDA3937_RS19015	0.11	-0.6
4,343,211	+		DDA3937_RS19015	0.11	-2.2
4,343,212	-		DDA3937_RS19015	0.11	-2.3
4,343,212	-		DDA3937_RS19015	0.11	-1.3
4,343,220	-		DDA3937_RS19015	0.11	-0.3
4,343,220	-		DDA3937_RS19015	0.11	-2.4
4,343,247	-		DDA3937_RS19015	0.13	-0.3
4,343,300	-		DDA3937_RS19015	0.16	+0.7
4,343,519	+				+0.4
4,343,520	-		DDA3937_RS19015	0.29	-0.3
4,343,559	+		DDA3937_RS19015	0.32	-0.8
4,343,606	+		DDA3937_RS19015	0.35	-1.2
4,343,606	+		DDA3937_RS19015	0.35	-2.5
4,343,606	+		DDA3937_RS19015	0.35	-0.0
4,343,606	+		DDA3937_RS19015	0.35	-2.1
4,343,607	-		DDA3937_RS19015	0.35	-1.2
4,343,607	-		DDA3937_RS19015	0.35	-0.6
4,343,607	-				+2.0
4,343,607	-		DDA3937_RS19015	0.35	-1.8
4,343,607	-		DDA3937_RS19015	0.35	-2.5
4,343,607	-		DDA3937_RS19015	0.35	+1.1
4,343,610	+		DDA3937_RS19015	0.35	-1.3
4,343,611	-		DDA3937_RS19015	0.35	-0.8
4,343,611	-		DDA3937_RS19015	0.35	+0.8
4,343,611	-		DDA3937_RS19015	0.35	-3.3
4,343,611	-		DDA3937_RS19015	0.35	-2.5
4,343,643	-		DDA3937_RS19015	0.37	-0.8
4,343,663	+		DDA3937_RS19015	0.38	-1.1
4,343,663	+		DDA3937_RS19015	0.38	-0.5
4,343,663	+		DDA3937_RS19015	0.38	-1.0
4,343,664	-		DDA3937_RS19015	0.38	-2.3
4,343,664	-		DDA3937_RS19015	0.38	+0.4
4,343,952	+		DDA3937_RS19015	0.56	-0.7
4,343,952	+		DDA3937_RS19015	0.56	-0.3
4,343,953	-		DDA3937_RS19015	0.56	-1.9
4,344,169	-		DDA3937_RS19015	0.69	-1.7
4,344,169	-		DDA3937_RS19015	0.69	-0.8
4,344,261	-		DDA3937_RS19015	0.74	-0.6
4,344,261	-		DDA3937_RS19015	0.74	-2.4
4,344,675	+				-0.3
4,344,691	-				-0.8
4,344,819	-				-1.8
4,344,895	+				-2.0
4,344,896	-				-2.5
4,344,896	-				-1.5
4,344,921	+				-1.5
4,344,921	+				-0.0
4,344,927	+				+2.5
4,344,927	+				+2.1
4,344,928	-				+1.2
4,344,928	-				+0.9
4,344,935	+				-1.0
4,344,935	+				-0.4
4,344,935	+				+1.0
4,344,935	+				+1.8
4,344,936	-				-1.2
4,344,936	-				-0.5
4,344,936	-				-1.8
4,344,936	-				+1.0
4,344,987	-				-1.8
4,345,013	+				+0.4
4,345,045	-				-0.4
4,345,045	-				-0.2
4,345,045	-				+1.0
4,345,045	-				-0.6
4,345,045	-				-0.7
4,345,049	+				-0.9
4,345,049	+				-1.3
4,345,049	+				+0.2
4,345,049	+				+1.0
4,345,050	-				-0.1
4,345,050	-				-1.0
4,345,050	-				-3.1
4,345,050	-				+0.8
4,345,163	+				+0.4
4,345,168	+				+0.1
4,345,169	-				+0.9
4,345,169	-				-1.0
4,345,169	-				+0.9
4,345,286	+				-1.5
4,345,382	-				-1.3
4,345,498	-		DDA3937_RS19020	0.17	-1.8
4,345,498	-		DDA3937_RS19020	0.17	+0.1