Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19005

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,340,257	-		DDA3937_RS19000	0.18	-0.3
4,340,518	+		DDA3937_RS19000	0.43	-0.6
4,340,910	-		DDA3937_RS19000	0.80	+2.5
4,340,914	+		DDA3937_RS19000	0.81	-0.0
4,340,940	-		DDA3937_RS19000	0.83	+0.4
4,340,940	-		DDA3937_RS19000	0.83	-1.5
4,341,167	+				-1.2
4,341,168	-				-1.3
4,341,242	+		DDA3937_RS19005	0.26	-0.7
4,341,242	+		DDA3937_RS19005	0.26	-1.3
4,341,242	+		DDA3937_RS19005	0.26	-1.6
4,341,242	+		DDA3937_RS19005	0.26	-0.2
4,341,273	+		DDA3937_RS19005	0.34	-1.9
4,341,391	-		DDA3937_RS19005	0.69	-0.2
4,341,487	-				+1.0
4,341,513	+				-0.6
4,341,520	+				-0.9
4,341,565	+				-0.2
4,341,566	-				+1.7
4,341,650	-				-2.1
4,341,757	+				-1.6
4,341,757	+				-1.3
4,341,757	+				+0.4
4,341,757	+				+1.7
4,341,757	+				+1.1
4,341,757	+				-0.3
4,341,757	+				-0.1
4,341,758	-				-1.1
4,341,758	-				-1.9
4,341,758	-				-1.8
4,341,759	+				-0.5
4,341,759	+				-3.1
4,341,759	+				-0.0
4,341,759	+				-0.3
4,341,759	+				-1.2
4,341,759	+				+0.0
4,341,759	+				+0.7
4,341,759	+				-1.2
4,341,759	+				-3.3
4,341,759	+				-1.2
4,341,759	+				+0.1
4,341,759	+				-0.6
4,341,759	+				-0.8
4,341,759	+				-1.3
4,341,760	-				-0.6
4,341,760	-				+1.4
4,341,760	-				+0.4
4,341,760	-				+1.1
4,341,760	-				-2.4
4,341,760	-				-1.4
4,341,760	-				-1.6
4,341,760	-				-0.3
4,341,760	-				+1.0
4,341,777	+				-1.0
4,341,777	+				+0.8
4,341,778	-				+1.7
4,341,785	-				+3.6
4,341,785	-				-0.9
4,341,848	+				+1.5
4,341,897	+				+1.3
4,341,897	+				-1.5
4,341,897	+				+1.7
4,341,898	-				-2.3
4,341,898	-				+0.7
4,341,898	-				-1.9
4,341,898	-				-2.3
4,342,047	+		DDA3937_RS19010	0.21	-0.8
4,342,047	+		DDA3937_RS19010	0.21	+1.4
4,342,047	+		DDA3937_RS19010	0.21	-1.8
4,342,048	-		DDA3937_RS19010	0.21	+1.8
4,342,048	-		DDA3937_RS19010	0.21	-1.6
4,342,048	-		DDA3937_RS19010	0.21	+0.4
4,342,048	-		DDA3937_RS19010	0.21	-0.3
4,342,060	-		DDA3937_RS19010	0.22	-2.7
4,342,113	+		DDA3937_RS19010	0.27	-1.0
4,342,113	+		DDA3937_RS19010	0.27	-0.2
4,342,113	+		DDA3937_RS19010	0.27	-1.8
4,342,113	+		DDA3937_RS19010	0.27	-0.0
4,342,114	-				+1.0
4,342,114	-		DDA3937_RS19010	0.27	-1.3
4,342,122	-		DDA3937_RS19010	0.28	+0.7
4,342,193	-		DDA3937_RS19010	0.35	+0.8
4,342,270	+		DDA3937_RS19010	0.42	+0.2
4,342,271	-		DDA3937_RS19010	0.42	+1.4
4,342,271	-		DDA3937_RS19010	0.42	-2.3
4,342,321	+		DDA3937_RS19010	0.47	-2.0
4,342,368	+		DDA3937_RS19010	0.51	-1.3
4,342,422	+		DDA3937_RS19010	0.56	+1.5
4,342,422	+		DDA3937_RS19010	0.56	+2.2
4,342,422	+		DDA3937_RS19010	0.56	-1.6
4,342,455	+		DDA3937_RS19010	0.59	-0.3
4,342,455	+		DDA3937_RS19010	0.59	-1.0
4,342,455	+		DDA3937_RS19010	0.59	-1.0
4,342,455	+		DDA3937_RS19010	0.59	-0.1
4,342,455	+		DDA3937_RS19010	0.59	-0.0
4,342,455	+		DDA3937_RS19010	0.59	-0.5
4,342,455	+		DDA3937_RS19010	0.59	-1.6
4,342,455	+		DDA3937_RS19010	0.59	+0.2
4,342,455	+		DDA3937_RS19010	0.59	-1.0
4,342,455	+		DDA3937_RS19010	0.59	-2.1
4,342,455	+		DDA3937_RS19010	0.59	+0.1
4,342,456	-		DDA3937_RS19010	0.59	-0.3
4,342,456	-		DDA3937_RS19010	0.59	-0.0
4,342,456	-		DDA3937_RS19010	0.59	-1.5
4,342,456	-		DDA3937_RS19010	0.59	-2.4
4,342,456	-		DDA3937_RS19010	0.59	-2.5
4,342,456	-		DDA3937_RS19010	0.59	-1.8
4,342,456	-		DDA3937_RS19010	0.59	-1.1
4,342,456	-		DDA3937_RS19010	0.59	+2.6
4,342,458	-		DDA3937_RS19010	0.59	+0.3
4,342,467	+		DDA3937_RS19010	0.60	+0.8
4,342,479	+		DDA3937_RS19010	0.61	+1.6
4,342,479	+		DDA3937_RS19010	0.61	-1.3
4,342,479	+		DDA3937_RS19010	0.61	-0.0
4,342,479	+		DDA3937_RS19010	0.61	-0.2
4,342,479	+		DDA3937_RS19010	0.61	-0.1
4,342,479	+		DDA3937_RS19010	0.61	-1.9
4,342,479	+		DDA3937_RS19010	0.61	+0.9
4,342,479	+		DDA3937_RS19010	0.61	-1.2
4,342,479	+		DDA3937_RS19010	0.61	-0.4
4,342,479	+		DDA3937_RS19010	0.61	-1.5
4,342,479	+		DDA3937_RS19010	0.61	-3.0
4,342,479	+		DDA3937_RS19010	0.61	-0.0
4,342,479	+		DDA3937_RS19010	0.61	+0.5
4,342,479	+		DDA3937_RS19010	0.61	+0.4
4,342,479	+		DDA3937_RS19010	0.61	+0.0
4,342,479	+		DDA3937_RS19010	0.61	-0.8
4,342,479	+		DDA3937_RS19010	0.61	+1.4
4,342,480	-		DDA3937_RS19010	0.61	-1.9
4,342,480	-		DDA3937_RS19010	0.61	-0.8
4,342,480	-		DDA3937_RS19010	0.61	-0.5
4,342,480	-		DDA3937_RS19010	0.61	-1.8
4,342,480	-		DDA3937_RS19010	0.61	-0.9
4,342,480	-		DDA3937_RS19010	0.61	-1.6
4,342,480	-		DDA3937_RS19010	0.61	+2.5
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	-0.6
4,342,480	-		DDA3937_RS19010	0.61	-1.2
4,342,480	-		DDA3937_RS19010	0.61	-2.4
4,342,480	-		DDA3937_RS19010	0.61	-1.2
4,342,480	-		DDA3937_RS19010	0.61	+2.2
4,342,480	-		DDA3937_RS19010	0.61	-1.3
4,342,480	-		DDA3937_RS19010	0.61	+1.0
4,342,480	-		DDA3937_RS19010	0.61	-0.7
4,342,480	-		DDA3937_RS19010	0.61	-1.9
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	+0.8
4,342,480	-				+1.4
4,342,480	-		DDA3937_RS19010	0.61	+0.8
4,342,480	-		DDA3937_RS19010	0.61	-0.9
4,342,480	-		DDA3937_RS19010	0.61	-0.0
4,342,480	-		DDA3937_RS19010	0.61	-0.3
4,342,480	-		DDA3937_RS19010	0.61	-0.7
4,342,481	+		DDA3937_RS19010	0.61	-0.0
4,342,481	+		DDA3937_RS19010	0.61	-0.3
4,342,481	+		DDA3937_RS19010	0.61	-3.8
4,342,481	+		DDA3937_RS19010	0.61	-0.3
4,342,482	-		DDA3937_RS19010	0.61	-3.4
4,342,482	-		DDA3937_RS19010	0.61	-1.1
4,342,482	-		DDA3937_RS19010	0.61	-1.2
4,342,482	-		DDA3937_RS19010	0.61	-0.8
4,342,482	-		DDA3937_RS19010	0.61	-3.8
4,342,482	-		DDA3937_RS19010	0.61	-0.7
4,342,482	-		DDA3937_RS19010	0.61	-0.8
4,342,482	-		DDA3937_RS19010	0.61	+1.7
4,342,485	+		DDA3937_RS19010	0.62	+0.9
4,342,485	+		DDA3937_RS19010	0.62	-0.6
4,342,485	+		DDA3937_RS19010	0.62	+1.5
4,342,486	-		DDA3937_RS19010	0.62	+1.4
4,342,486	-		DDA3937_RS19010	0.62	-1.9
4,342,486	-		DDA3937_RS19010	0.62	-0.1
4,342,486	-		DDA3937_RS19010	0.62	-0.0
4,342,486	-		DDA3937_RS19010	0.62	-0.7
4,342,486	-		DDA3937_RS19010	0.62	-0.8
4,342,486	-		DDA3937_RS19010	0.62	+1.0
4,342,486	-		DDA3937_RS19010	0.62	-1.0