Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18550 and DDA3937_RS18555 are separated by 129 nucleotides DDA3937_RS18555 and DDA3937_RS18560 are separated by 11 nucleotides DDA3937_RS18560 and DDA3937_RS18565 are separated by 104 nucleotides DDA3937_RS18565 and DDA3937_RS18570 overlap by 1 nucleotides
DDA3937_RS18550: DDA3937_RS18550 - deoxyribonuclease I, at 4,242,052 to 4,242,750
_RS18550
DDA3937_RS18555: DDA3937_RS18555 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 4,242,880 to 4,243,614
_RS18555
DDA3937_RS18560: DDA3937_RS18560 - glutathione synthase, at 4,243,626 to 4,244,579
_RS18560
DDA3937_RS18565: DDA3937_RS18565 - YqgE/AlgH family protein, at 4,244,684 to 4,245,247
_RS18565
DDA3937_RS18570: DDA3937_RS18570 - Holliday junction resolvase RuvX, at 4,245,247 to 4,245,678
_RS18570
Position (kb) 4243
4244
4245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4242.705 kb on - strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.724 kb on + strand at 4242.725 kb on - strand at 4242.725 kb on - strand at 4242.725 kb on - strand at 4242.761 kb on + strand at 4242.762 kb on - strand at 4242.762 kb on - strand at 4242.762 kb on - strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.764 kb on + strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.765 kb on - strand at 4242.781 kb on + strand at 4242.782 kb on - strand at 4242.782 kb on - strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.783 kb on + strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.784 kb on - strand at 4242.864 kb on + strand at 4242.864 kb on + strand at 4242.864 kb on + strand at 4242.875 kb on + strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4242.876 kb on - strand at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.028 kb on + strand, within DDA3937_RS18555 at 4243.029 kb on - strand, within DDA3937_RS18555 at 4243.195 kb on - strand, within DDA3937_RS18555 at 4243.383 kb on - strand, within DDA3937_RS18555 at 4243.383 kb on - strand, within DDA3937_RS18555 at 4243.416 kb on + strand, within DDA3937_RS18555 at 4243.416 kb on + strand, within DDA3937_RS18555 at 4243.417 kb on - strand, within DDA3937_RS18555 at 4243.518 kb on + strand, within DDA3937_RS18555 at 4243.525 kb on - strand, within DDA3937_RS18555 at 4243.525 kb on - strand, within DDA3937_RS18555 at 4243.621 kb on + strand at 4243.621 kb on + strand at 4243.621 kb on + strand at 4243.670 kb on + strand at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand, within DDA3937_RS18560 at 4243.734 kb on + strand at 4243.737 kb on - strand at 4243.737 kb on - strand, within DDA3937_RS18560 at 4243.806 kb on + strand, within DDA3937_RS18560 at 4243.812 kb on + strand, within DDA3937_RS18560 at 4243.914 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.923 kb on + strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4243.924 kb on - strand, within DDA3937_RS18560 at 4244.286 kb on + strand, within DDA3937_RS18560 at 4244.529 kb on - strand at 4244.532 kb on - strand at 4244.583 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.611 kb on + strand at 4244.612 kb on - strand at 4244.612 kb on - strand at 4244.612 kb on - strand at 4244.677 kb on - strand at 4244.677 kb on - strand at 4244.677 kb on - strand at 4244.691 kb on + strand at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.756 kb on + strand, within DDA3937_RS18565 at 4244.833 kb on + strand, within DDA3937_RS18565 at 4244.872 kb on + strand, within DDA3937_RS18565 at 4244.872 kb on + strand, within DDA3937_RS18565 at 4244.872 kb on + strand, within DDA3937_RS18565 at 4244.944 kb on + strand, within DDA3937_RS18565 at 4244.976 kb on + strand, within DDA3937_RS18565 at 4245.001 kb on + strand, within DDA3937_RS18565 at 4245.001 kb on + strand, within DDA3937_RS18565 at 4245.001 kb on + strand, within DDA3937_RS18565 at 4245.132 kb on + strand, within DDA3937_RS18565 at 4245.132 kb on + strand, within DDA3937_RS18565 at 4245.132 kb on + strand, within DDA3937_RS18565 at 4245.133 kb on - strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.150 kb on + strand, within DDA3937_RS18565 at 4245.151 kb on - strand, within DDA3937_RS18565 at 4245.151 kb on - strand, within DDA3937_RS18565 at 4245.151 kb on - strand, within DDA3937_RS18565 at 4245.217 kb on + strand at 4245.217 kb on + strand at 4245.220 kb on + strand at 4245.258 kb on + strand at 4245.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,242,705 - -2.8 4,242,724 + -0.0 4,242,724 + -1.5 4,242,724 + -0.8 4,242,724 + +0.7 4,242,725 - -1.5 4,242,725 - +1.8 4,242,725 - -0.8 4,242,761 + -3.6 4,242,762 - -0.3 4,242,762 - -0.1 4,242,762 - -0.8 4,242,764 + -0.0 4,242,764 + -0.3 4,242,764 + -2.1 4,242,764 + +0.3 4,242,765 - +0.9 4,242,765 - +0.7 4,242,765 - -0.3 4,242,765 - -1.3 4,242,781 + -0.8 4,242,782 - -1.9 4,242,782 - +2.0 4,242,783 + -0.0 4,242,783 + +0.3 4,242,783 + +1.2 4,242,783 + -1.8 4,242,783 + -1.5 4,242,783 + -0.6 4,242,783 + -0.0 4,242,783 + -1.0 4,242,783 + -2.3 4,242,784 - -2.3 4,242,784 - -2.1 4,242,784 - +1.5 4,242,784 - -1.7 4,242,784 - -0.6 4,242,864 + +0.2 4,242,864 + -2.9 4,242,864 + +0.7 4,242,875 + -2.5 4,242,876 - -1.3 4,242,876 - +0.2 4,242,876 - +0.9 4,242,876 - +0.3 4,242,876 - +0.7 4,243,028 + DDA3937_RS18555 0.20 +4.1 4,243,028 + DDA3937_RS18555 0.20 +0.7 4,243,028 + DDA3937_RS18555 0.20 -1.1 4,243,029 - DDA3937_RS18555 0.20 -2.8 4,243,195 - DDA3937_RS18555 0.43 -0.1 4,243,383 - DDA3937_RS18555 0.68 +0.2 4,243,383 - DDA3937_RS18555 0.68 -1.8 4,243,416 + DDA3937_RS18555 0.73 -2.2 4,243,416 + DDA3937_RS18555 0.73 +2.7 4,243,417 - DDA3937_RS18555 0.73 +0.7 4,243,518 + DDA3937_RS18555 0.87 -0.6 4,243,525 - DDA3937_RS18555 0.88 -0.3 4,243,525 - DDA3937_RS18555 0.88 +0.1 4,243,621 + +0.5 4,243,621 + -3.1 4,243,621 + +0.4 4,243,670 + +0.2 4,243,734 + DDA3937_RS18560 0.11 -0.8 4,243,734 + DDA3937_RS18560 0.11 -0.3 4,243,734 + DDA3937_RS18560 0.11 -2.5 4,243,734 + +2.0 4,243,737 - +2.0 4,243,737 - DDA3937_RS18560 0.12 -1.6 4,243,806 + DDA3937_RS18560 0.19 -1.2 4,243,812 + DDA3937_RS18560 0.19 +0.7 4,243,914 + DDA3937_RS18560 0.30 -1.3 4,243,923 + DDA3937_RS18560 0.31 -0.8 4,243,923 + DDA3937_RS18560 0.31 -0.6 4,243,923 + DDA3937_RS18560 0.31 -1.6 4,243,924 - DDA3937_RS18560 0.31 +0.4 4,243,924 - DDA3937_RS18560 0.31 -0.6 4,243,924 - DDA3937_RS18560 0.31 +0.7 4,244,286 + DDA3937_RS18560 0.69 -0.0 4,244,529 - -0.8 4,244,532 - +0.6 4,244,583 + +1.7 4,244,611 + -0.3 4,244,611 + -2.9 4,244,611 + -0.3 4,244,611 + -1.0 4,244,611 + -0.4 4,244,611 + -1.6 4,244,612 - -0.3 4,244,612 - -2.5 4,244,612 - -0.6 4,244,677 - +0.4 4,244,677 - +2.0 4,244,677 - +0.4 4,244,691 + -1.1 4,244,756 + DDA3937_RS18565 0.13 -0.0 4,244,756 + DDA3937_RS18565 0.13 -0.6 4,244,756 + DDA3937_RS18565 0.13 -2.9 4,244,756 + DDA3937_RS18565 0.13 -0.0 4,244,756 + DDA3937_RS18565 0.13 -1.4 4,244,756 + DDA3937_RS18565 0.13 -2.2 4,244,756 + DDA3937_RS18565 0.13 +0.8 4,244,756 + DDA3937_RS18565 0.13 +0.4 4,244,833 + DDA3937_RS18565 0.26 -1.2 4,244,872 + DDA3937_RS18565 0.33 -0.4 4,244,872 + DDA3937_RS18565 0.33 +0.9 4,244,872 + DDA3937_RS18565 0.33 -1.2 4,244,944 + DDA3937_RS18565 0.46 +0.4 4,244,976 + DDA3937_RS18565 0.52 -3.7 4,245,001 + DDA3937_RS18565 0.56 -3.2 4,245,001 + DDA3937_RS18565 0.56 -3.4 4,245,001 + DDA3937_RS18565 0.56 -1.4 4,245,132 + DDA3937_RS18565 0.79 +0.1 4,245,132 + DDA3937_RS18565 0.79 -2.2 4,245,132 + DDA3937_RS18565 0.79 -0.4 4,245,133 - DDA3937_RS18565 0.80 -0.4 4,245,150 + DDA3937_RS18565 0.83 -0.4 4,245,150 + DDA3937_RS18565 0.83 -3.0 4,245,150 + DDA3937_RS18565 0.83 +2.6 4,245,150 + DDA3937_RS18565 0.83 +0.9 4,245,150 + DDA3937_RS18565 0.83 -0.4 4,245,150 + DDA3937_RS18565 0.83 +3.0 4,245,151 - DDA3937_RS18565 0.83 -0.4 4,245,151 - DDA3937_RS18565 0.83 -0.6 4,245,151 - DDA3937_RS18565 0.83 -0.3 4,245,217 + -3.0 4,245,217 + -1.7 4,245,220 + -0.3 4,245,258 + +0.2 4,245,258 + +0.7
Or see this region's nucleotide sequence