Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18460

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,216,487	-		DDA3937_RS18455	0.74	-0.4
4,216,487	-		DDA3937_RS18455	0.74	-0.2
4,216,531	-		DDA3937_RS18455	0.76	-2.2
4,216,583	+		DDA3937_RS18455	0.79	-1.0
4,216,584	-		DDA3937_RS18455	0.79	-2.0
4,216,584	-		DDA3937_RS18455	0.79	+1.2
4,216,584	-				+4.0
4,216,584	-		DDA3937_RS18455	0.79	+0.3
4,216,584	-		DDA3937_RS18455	0.79	-0.0
4,216,589	+		DDA3937_RS18455	0.79	+0.9
4,216,589	+		DDA3937_RS18455	0.79	-0.5
4,216,589	+		DDA3937_RS18455	0.79	-1.3
4,216,589	+		DDA3937_RS18455	0.79	-2.2
4,216,589	+		DDA3937_RS18455	0.79	+0.4
4,216,590	-		DDA3937_RS18455	0.79	-0.1
4,216,590	-		DDA3937_RS18455	0.79	-0.7
4,216,590	-		DDA3937_RS18455	0.79	+2.1
4,216,590	-		DDA3937_RS18455	0.79	-0.2
4,216,590	-		DDA3937_RS18455	0.79	-1.5
4,216,590	-		DDA3937_RS18455	0.79	-2.7
4,216,677	+		DDA3937_RS18455	0.84	+1.4
4,216,678	-		DDA3937_RS18455	0.84	-2.4
4,216,678	-		DDA3937_RS18455	0.84	-0.4
4,216,695	+		DDA3937_RS18455	0.85	-0.9
4,216,695	+		DDA3937_RS18455	0.85	+0.9
4,216,696	-		DDA3937_RS18455	0.85	-1.5
4,216,696	-		DDA3937_RS18455	0.85	+2.0
4,216,728	+		DDA3937_RS18455	0.87	-3.0
4,216,793	+				-1.9
4,216,793	+				-3.1
4,216,799	+				-1.7
4,216,828	+				+0.1
4,216,829	-				-0.9
4,216,829	-				-0.4
4,216,829	-				-0.6
4,216,855	-				-0.2
4,216,855	-				-0.6
4,216,855	-				-2.9
4,216,874	-				-0.1
4,216,874	-				-1.6
4,216,939	-				+0.3
4,216,970	+				-0.9
4,216,971	-				+1.6
4,216,971	-				-1.2
4,216,975	+				+0.1
4,216,976	-				-1.4
4,216,986	+				-1.5
4,216,986	+				-1.2
4,216,986	+				+0.2
4,216,986	+				-2.3
4,216,986	+				-1.6
4,216,986	+				-2.3
4,216,987	-				-1.0
4,216,987	-				-0.7
4,216,987	-				-1.7
4,216,987	-				+1.2
4,216,987	-				-1.2
4,217,066	+				+2.0
4,217,066	+				-2.9
4,217,066	+				-0.3
4,217,067	-				-0.4
4,217,067	-				-0.6
4,217,067	-				+0.1
4,217,076	+				-2.1
4,217,076	+				-2.0
4,217,076	+				-0.4
4,217,078	+				-2.0
4,217,106	-				-3.9
4,217,175	-				-0.5
4,217,210	+				+1.2
4,217,211	-				+0.4
4,217,330	+				-0.2
4,217,330	+				-0.7
4,217,331	-				+1.0
4,217,346	+				-1.4
4,217,346	+				-2.0
4,217,413	+				+2.1
4,217,413	+				-0.0
4,217,414	-				+0.8
4,217,414	-				+0.6
4,217,414	-				-0.7
4,217,427	+				-1.2
4,217,428	-				-0.2
4,217,466	+				+0.1
4,217,466	+				+0.1
4,217,467	-				+1.7
4,217,467	-				+0.6
4,217,472	+				-2.7
4,217,472	+				-1.6
4,217,472	+				+0.8
4,217,473	-				-0.0
4,217,473	-				+1.2
4,217,473	-				+0.7
4,217,517	-				+1.1
4,217,529	-				+0.9
4,217,696	-		DDA3937_RS18460	0.14	+2.3
4,217,708	+		DDA3937_RS18460	0.15	-0.1
4,217,708	+				+1.4
4,217,709	-		DDA3937_RS18460	0.15	-1.7
4,217,849	+		DDA3937_RS18460	0.24	+1.5
4,217,850	-		DDA3937_RS18460	0.24	+1.4
4,218,078	+		DDA3937_RS18460	0.37	+4.2
4,218,079	-		DDA3937_RS18460	0.37	-0.8
4,218,079	-		DDA3937_RS18460	0.37	-0.8
4,218,079	-		DDA3937_RS18460	0.37	+1.5
4,218,087	-		DDA3937_RS18460	0.38	+1.0
4,218,114	+		DDA3937_RS18460	0.39	+0.2
4,218,114	+		DDA3937_RS18460	0.39	-0.0
4,218,114	+		DDA3937_RS18460	0.39	+1.2
4,218,115	-		DDA3937_RS18460	0.40	-0.3
4,218,115	-		DDA3937_RS18460	0.40	+1.8
4,218,186	+		DDA3937_RS18460	0.44	+0.7
4,218,186	+		DDA3937_RS18460	0.44	+0.4
4,218,187	-		DDA3937_RS18460	0.44	-0.6
4,218,187	-		DDA3937_RS18460	0.44	+1.0
4,218,187	-		DDA3937_RS18460	0.44	+0.3
4,218,361	-		DDA3937_RS18460	0.54	+0.2
4,218,453	+		DDA3937_RS18460	0.60	+1.5
4,218,453	+		DDA3937_RS18460	0.60	-0.0
4,218,453	+		DDA3937_RS18460	0.60	-0.8
4,218,477	-		DDA3937_RS18460	0.61	-0.4
4,218,515	+		DDA3937_RS18460	0.64	+0.2
4,218,516	-		DDA3937_RS18460	0.64	-0.7
4,218,519	-		DDA3937_RS18460	0.64	+0.5
4,218,540	-		DDA3937_RS18460	0.65	-0.5
4,218,557	+		DDA3937_RS18460	0.66	-0.9
4,218,557	+		DDA3937_RS18460	0.66	-0.9
4,218,557	+		DDA3937_RS18460	0.66	+0.7
4,218,557	+		DDA3937_RS18460	0.66	-0.4
4,218,557	+		DDA3937_RS18460	0.66	+0.9
4,218,557	+		DDA3937_RS18460	0.66	-0.9
4,218,558	-		DDA3937_RS18460	0.66	+0.8
4,218,558	-		DDA3937_RS18460	0.66	+0.5
4,218,628	+		DDA3937_RS18460	0.70	+1.2
4,218,629	-		DDA3937_RS18460	0.70	+0.9
4,218,735	+		DDA3937_RS18460	0.77	+1.0
4,218,735	+		DDA3937_RS18460	0.77	+0.5
4,218,735	+		DDA3937_RS18460	0.77	+0.2
4,218,735	+		DDA3937_RS18460	0.77	+1.0
4,218,735	+		DDA3937_RS18460	0.77	+0.4
4,218,736	-		DDA3937_RS18460	0.77	+2.1
4,218,736	-		DDA3937_RS18460	0.77	+0.2
4,218,736	-		DDA3937_RS18460	0.77	-3.1
4,218,996	+				+0.7
4,219,044	+				+1.6
4,219,045	-				+0.0
4,219,045	-				+0.1
4,219,053	+				+1.1
4,219,054	-				+0.4
4,219,064	+				-0.9
4,219,065	-				-0.1
4,219,104	+				-2.6
4,219,104	+				+0.1
4,219,104	+				+1.5
4,219,104	+				+0.2
4,219,104	+				-1.3
4,219,105	-				-0.9
4,219,105	-				+1.6
4,219,105	-				+0.3
4,219,105	-				+1.0
4,219,105	-				+0.8
4,219,105	-				+0.4
4,219,203	+				-1.7
4,219,203	+				+2.4
4,219,203	+				-0.5
4,219,204	-				+0.7
4,219,226	+				-0.6
4,219,227	-				-1.6
4,219,227	-				-0.7
4,219,444	+				+0.0
4,219,444	+				-0.4
4,219,445	-				-2.0
4,219,633	-		DDA3937_RS18465	0.19	+1.0
4,219,674	+		DDA3937_RS18465	0.21	-0.9
4,219,675	-		DDA3937_RS18465	0.21	-1.4
4,219,675	-		DDA3937_RS18465	0.21	+0.3
4,219,675	-		DDA3937_RS18465	0.21	+1.0
4,219,675	-		DDA3937_RS18465	0.21	-0.2
4,219,675	-		DDA3937_RS18465	0.21	-0.4
4,219,767	+		DDA3937_RS18465	0.27	-1.4
4,219,786	+		DDA3937_RS18465	0.28	+0.0
4,219,786	+		DDA3937_RS18465	0.28	-2.0
4,219,786	+		DDA3937_RS18465	0.28	+0.7
4,219,888	-		DDA3937_RS18465	0.34	+1.7
4,219,888	-		DDA3937_RS18465	0.34	-2.0
4,219,935	+		DDA3937_RS18465	0.36	-0.6