Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18300

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,177,021	-		DDA3937_RS18290	0.85	+0.4
4,177,134	-				-1.5
4,177,205	+		DDA3937_RS18295	0.16	-1.2
4,177,206	-		DDA3937_RS18295	0.16	+0.5
4,177,248	+		DDA3937_RS18295	0.22	+0.5
4,177,353	-		DDA3937_RS18295	0.35	-0.1
4,177,396	+		DDA3937_RS18295	0.41	-1.8
4,177,396	+		DDA3937_RS18295	0.41	-0.2
4,177,396	+		DDA3937_RS18295	0.41	-1.2
4,177,396	+		DDA3937_RS18295	0.41	-0.1
4,177,396	+		DDA3937_RS18295	0.41	-0.6
4,177,397	-		DDA3937_RS18295	0.41	-0.1
4,177,397	-		DDA3937_RS18295	0.41	-1.2
4,177,397	-		DDA3937_RS18295	0.41	-0.1
4,177,397	-		DDA3937_RS18295	0.41	-0.1
4,177,397	-		DDA3937_RS18295	0.41	-2.2
4,177,397	-		DDA3937_RS18295	0.41	-2.7
4,177,397	-		DDA3937_RS18295	0.41	-1.4
4,177,397	-		DDA3937_RS18295	0.41	-0.3
4,177,397	-		DDA3937_RS18295	0.41	+0.5
4,177,530	-		DDA3937_RS18295	0.58	-0.1
4,177,571	+				-0.1
4,177,571	+		DDA3937_RS18295	0.63	-1.1
4,177,571	+		DDA3937_RS18295	0.63	-1.3
4,177,571	+		DDA3937_RS18295	0.63	-0.5
4,177,572	-		DDA3937_RS18295	0.63	+0.4
4,177,572	-		DDA3937_RS18295	0.63	-1.1
4,177,572	-		DDA3937_RS18295	0.63	-1.1
4,177,572	-		DDA3937_RS18295	0.63	+0.4
4,177,572	-		DDA3937_RS18295	0.63	+0.3
4,177,619	+		DDA3937_RS18295	0.69	-1.1
4,177,619	+		DDA3937_RS18295	0.69	-0.2
4,177,619	+		DDA3937_RS18295	0.69	-1.6
4,177,620	-		DDA3937_RS18295	0.69	-0.4
4,177,620	-		DDA3937_RS18295	0.69	-0.7
4,177,620	-		DDA3937_RS18295	0.69	-1.1
4,177,620	-		DDA3937_RS18295	0.69	+0.9
4,177,620	-				+1.9
4,177,620	-		DDA3937_RS18295	0.69	-0.6
4,177,620	-		DDA3937_RS18295	0.69	-0.6
4,177,721	+		DDA3937_RS18295	0.82	-0.6
4,177,721	+		DDA3937_RS18295	0.82	-1.1
4,177,722	-		DDA3937_RS18295	0.82	+0.7
4,177,772	+		DDA3937_RS18295	0.89	+1.1
4,177,772	+		DDA3937_RS18295	0.89	-2.3
4,177,772	+		DDA3937_RS18295	0.89	-2.2
4,177,772	+		DDA3937_RS18295	0.89	+0.0
4,177,772	+		DDA3937_RS18295	0.89	-0.6
4,177,772	+		DDA3937_RS18295	0.89	-1.0
4,177,772	+		DDA3937_RS18295	0.89	-1.5
4,177,772	+		DDA3937_RS18295	0.89	+0.4
4,177,773	-		DDA3937_RS18295	0.89	-0.9
4,177,773	-		DDA3937_RS18295	0.89	-1.1
4,177,773	-		DDA3937_RS18295	0.89	-0.6
4,177,773	-		DDA3937_RS18295	0.89	+3.1
4,177,773	-		DDA3937_RS18295	0.89	-0.9
4,177,773	-		DDA3937_RS18295	0.89	+0.8
4,177,773	-		DDA3937_RS18295	0.89	-0.3
4,177,773	-		DDA3937_RS18295	0.89	-1.1
4,177,773	-		DDA3937_RS18295	0.89	-0.2
4,177,791	+				+0.9
4,177,827	-				-0.4
4,177,827	-				+0.2
4,177,829	+				-1.4
4,177,829	+				-0.7
4,177,830	-				-2.5
4,177,855	-				+0.0
4,177,855	-				-2.9
4,177,862	+				-0.4
4,177,862	+				-0.6
4,177,862	+				-0.9
4,177,862	+				-0.9
4,177,862	+				-0.6
4,177,863	-				-2.5
4,177,863	-				+2.2
4,177,863	-				-0.0
4,177,863	-				-0.2
4,177,863	-				-1.4
4,177,863	-				+0.7
4,177,863	-				-2.5
4,177,863	-				+0.4
4,177,863	-				-0.1
4,177,886	+				-1.6
4,177,886	+				-1.8
4,177,887	-				-1.6
4,177,887	-				+0.5
4,177,887	-				-0.9
4,177,887	-				-1.4
4,177,887	-				-2.0
4,177,887	-				-3.0
4,177,887	-				-1.2
4,177,887	-				+0.3
4,177,887	-				-1.0
4,177,895	+				+1.1
4,177,895	+				-1.8
4,177,895	+				+0.4
4,177,896	-				-1.1
4,177,896	-				+0.1
4,177,896	-				+0.1
4,177,896	-				-0.1
4,177,897	+				+3.2
4,177,897	+				-0.7
4,177,897	+				-0.3
4,177,898	-				+0.8
4,177,912	+				-2.9
4,177,918	+				-1.8
4,177,918	+				-3.1
4,177,918	+				-1.5
4,177,969	+				-0.2
4,177,972	+				+0.4
4,177,973	-				-1.2
4,177,973	-				-1.6
4,178,094	+		DDA3937_RS18300	0.12	-1.6
4,178,094	+		DDA3937_RS18300	0.12	+1.3
4,178,094	+		DDA3937_RS18300	0.12	-0.6
4,178,184	-		DDA3937_RS18300	0.27	-0.6
4,178,246	+		DDA3937_RS18300	0.37	-1.2
4,178,246	+		DDA3937_RS18300	0.37	-0.4
4,178,247	-		DDA3937_RS18300	0.37	+1.7
4,178,262	-		DDA3937_RS18300	0.39	+2.1
4,178,350	-		DDA3937_RS18300	0.53	+0.6
4,178,471	+		DDA3937_RS18300	0.73	-0.9
4,178,472	-		DDA3937_RS18300	0.73	+0.4
4,178,633	+				-0.4
4,178,633	+				+0.2
4,178,634	-				-0.3
4,178,634	-				+0.9
4,178,652	-				-1.6
4,178,676	+				+0.5
4,178,731	+				+0.4
4,178,843	+				+0.9
4,178,853	+				-1.1
4,178,853	+				+1.0
4,178,853	+				-1.6
4,178,853	+				-2.4
4,178,853	+				-0.4
4,178,853	+				+0.4
4,178,853	+				+0.0
4,178,853	+				-0.6
4,178,853	+				-2.1
4,178,853	+				-0.5
4,178,853	+				-1.2
4,178,854	-				-0.6
4,178,854	-				-0.6
4,178,854	-				+0.3
4,178,854	-				-0.0
4,178,854	-				-1.1
4,178,854	-				-1.0
4,178,854	-				+0.2
4,178,854	-				-0.6
4,178,854	-				-1.2
4,178,854	-				-1.1
4,178,854	-				-0.6
4,178,855	+				-0.8
4,178,855	+				-0.2
4,178,855	+				+0.8
4,178,856	-				+0.9
4,178,856	-				+0.3
4,178,926	-				-1.9
4,178,927	+				-1.0
4,178,927	+				-0.9
4,178,927	+				-2.6
4,178,927	+				+0.1
4,178,927	+				-1.4
4,178,927	+				-1.4
4,178,927	+				-1.8
4,178,928	-				-2.0
4,178,928	-				-0.9
4,178,928	-				-0.8
4,178,928	-				-1.1
4,178,928	-				-0.9
4,178,928	-				+0.1
4,178,928	-				-2.6
4,178,928	-				-2.9
4,178,928	-				-1.4
4,178,928	-				-2.0
4,178,928	-				+0.4
4,178,933	+				-2.8
4,178,933	+				-0.9
4,178,933	+				-3.5
4,178,933	+				-2.6
4,178,934	-				-0.1
4,178,934	-				-2.8
4,178,934	-				-0.2
4,178,934	-				-1.1
4,178,934	-				-2.5
4,178,934	-				-3.1
4,179,075	+		DDA3937_RS18305	0.10	-1.6
4,179,299	+		DDA3937_RS18305	0.17	-1.1
4,179,299	+		DDA3937_RS18305	0.17	-2.2
4,179,300	-		DDA3937_RS18305	0.17	-2.2
4,179,300	-		DDA3937_RS18305	0.17	-0.5
4,179,566	+		DDA3937_RS18305	0.26	-1.9
4,179,566	+		DDA3937_RS18305	0.26	-1.5
4,179,618	+		DDA3937_RS18305	0.27	-1.5
4,179,618	+		DDA3937_RS18305	0.27	-1.6
4,179,618	+		DDA3937_RS18305	0.27	+0.7
4,179,619	-		DDA3937_RS18305	0.27	+1.4