Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18230 and DDA3937_RS18235 are separated by 271 nucleotides DDA3937_RS18235 and DDA3937_RS18240 are separated by 64 nucleotides DDA3937_RS18240 and DDA3937_RS18245 are separated by 63 nucleotides
DDA3937_RS18230: DDA3937_RS18230 - DNA polymerase II, at 4,160,038 to 4,162,410
_RS18230
DDA3937_RS18235: DDA3937_RS18235 - RNA polymerase-associated protein RapA, at 4,162,682 to 4,165,585
_RS18235
DDA3937_RS18240: DDA3937_RS18240 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 4,165,650 to 4,166,303
_RS18240
DDA3937_RS18245: DDA3937_RS18245 - co-chaperone DjlA, at 4,166,367 to 4,167,347
_RS18245
Position (kb) 4162
4163
4164
4165
4166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4161.682 kb on + strand, within DDA3937_RS18230 at 4161.714 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.769 kb on + strand, within DDA3937_RS18230 at 4161.770 kb on - strand, within DDA3937_RS18230 at 4161.770 kb on - strand, within DDA3937_RS18230 at 4161.770 kb on - strand, within DDA3937_RS18230 at 4161.838 kb on + strand, within DDA3937_RS18230 at 4162.015 kb on + strand, within DDA3937_RS18230 at 4162.015 kb on + strand, within DDA3937_RS18230 at 4162.042 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.063 kb on + strand, within DDA3937_RS18230 at 4162.064 kb on - strand, within DDA3937_RS18230 at 4162.108 kb on + strand at 4162.108 kb on + strand, within DDA3937_RS18230 at 4162.166 kb on + strand, within DDA3937_RS18230 at 4162.205 kb on - strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.246 kb on + strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.247 kb on - strand at 4162.303 kb on + strand at 4162.304 kb on - strand at 4162.304 kb on - strand at 4162.312 kb on + strand at 4162.313 kb on - strand at 4162.313 kb on - strand at 4162.347 kb on + strand at 4162.347 kb on + strand at 4162.348 kb on - strand at 4162.348 kb on - strand at 4162.377 kb on + strand at 4162.377 kb on + strand at 4162.377 kb on + strand at 4162.378 kb on - strand at 4162.378 kb on - strand at 4162.404 kb on - strand at 4162.404 kb on - strand at 4162.408 kb on + strand at 4162.409 kb on - strand at 4162.409 kb on - strand at 4162.461 kb on - strand at 4162.461 kb on - strand at 4162.505 kb on + strand at 4162.506 kb on - strand at 4162.520 kb on + strand at 4162.520 kb on + strand at 4162.520 kb on + strand at 4162.521 kb on - strand at 4162.521 kb on - strand at 4162.521 kb on - strand at 4162.607 kb on + strand at 4162.674 kb on + strand at 4162.675 kb on - strand at 4162.675 kb on - strand at 4162.675 kb on - strand at 4162.675 kb on - strand at 4162.681 kb on + strand at 4162.682 kb on - strand at 4162.690 kb on + strand at 4162.690 kb on + strand at 4162.690 kb on + strand at 4162.691 kb on - strand at 4162.691 kb on - strand at 4162.691 kb on - strand at 4162.808 kb on + strand at 4162.809 kb on - strand at 4162.858 kb on + strand at 4162.859 kb on - strand at 4162.865 kb on - strand at 4162.887 kb on + strand at 4162.888 kb on - strand at 4162.888 kb on - strand at 4162.888 kb on - strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.928 kb on + strand at 4162.929 kb on - strand at 4162.929 kb on - strand at 4162.929 kb on - strand at 4162.929 kb on - strand at 4163.005 kb on + strand, within DDA3937_RS18235 at 4163.005 kb on + strand, within DDA3937_RS18235 at 4163.006 kb on - strand, within DDA3937_RS18235 at 4163.455 kb on - strand, within DDA3937_RS18235 at 4163.536 kb on - strand, within DDA3937_RS18235 at 4163.564 kb on + strand, within DDA3937_RS18235 at 4163.564 kb on + strand, within DDA3937_RS18235 at 4163.564 kb on + strand, within DDA3937_RS18235 at 4163.565 kb on - strand, within DDA3937_RS18235 at 4163.694 kb on - strand, within DDA3937_RS18235 at 4163.694 kb on - strand, within DDA3937_RS18235 at 4163.694 kb on - strand, within DDA3937_RS18235 at 4163.723 kb on + strand, within DDA3937_RS18235 at 4163.724 kb on - strand, within DDA3937_RS18235 at 4164.008 kb on + strand, within DDA3937_RS18235 at 4164.008 kb on + strand, within DDA3937_RS18235 at 4164.009 kb on - strand, within DDA3937_RS18235 at 4164.098 kb on + strand, within DDA3937_RS18235 at 4164.099 kb on - strand, within DDA3937_RS18235 at 4164.247 kb on - strand, within DDA3937_RS18235 at 4164.247 kb on - strand, within DDA3937_RS18235 at 4164.247 kb on - strand, within DDA3937_RS18235 at 4164.323 kb on + strand, within DDA3937_RS18235 at 4164.324 kb on - strand, within DDA3937_RS18235 at 4164.324 kb on - strand, within DDA3937_RS18235 at 4164.426 kb on + strand, within DDA3937_RS18235 at 4164.426 kb on + strand, within DDA3937_RS18235 at 4164.427 kb on - strand, within DDA3937_RS18235 at 4164.427 kb on - strand, within DDA3937_RS18235 at 4164.512 kb on + strand, within DDA3937_RS18235 at 4164.513 kb on - strand, within DDA3937_RS18235 at 4164.617 kb on + strand, within DDA3937_RS18235 at 4164.631 kb on + strand, within DDA3937_RS18235 at 4164.859 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.913 kb on + strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4164.914 kb on - strand, within DDA3937_RS18235 at 4165.083 kb on - strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.136 kb on + strand, within DDA3937_RS18235 at 4165.137 kb on - strand, within DDA3937_RS18235 at 4165.291 kb on + strand, within DDA3937_RS18235 at 4165.583 kb on + strand at 4165.583 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.601 kb on + strand at 4165.602 kb on - strand at 4165.602 kb on - strand at 4165.603 kb on + strand at 4165.603 kb on + strand at 4165.603 kb on + strand at 4165.603 kb on + strand at 4165.604 kb on - strand at 4165.604 kb on - strand at 4165.604 kb on - strand at 4165.604 kb on - strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.605 kb on + strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.606 kb on - strand at 4165.659 kb on + strand at 4165.660 kb on - strand at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.781 kb on + strand, within DDA3937_RS18240 at 4165.782 kb on - strand at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.782 kb on - strand, within DDA3937_RS18240 at 4165.929 kb on + strand, within DDA3937_RS18240 at 4165.929 kb on + strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4165.930 kb on - strand, within DDA3937_RS18240 at 4166.185 kb on - strand, within DDA3937_RS18240 at 4166.185 kb on - strand, within DDA3937_RS18240 at 4166.185 kb on - strand, within DDA3937_RS18240 at 4166.264 kb on + strand at 4166.351 kb on - strand at 4166.395 kb on + strand at 4166.395 kb on + strand at 4166.395 kb on + strand at 4166.396 kb on - strand at 4166.396 kb on - strand at 4166.396 kb on - strand at 4166.402 kb on - strand at 4166.414 kb on + strand at 4166.559 kb on - strand, within DDA3937_RS18245
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,161,682 + DDA3937_RS18230 0.69 -0.0 4,161,714 + DDA3937_RS18230 0.71 +0.1 4,161,769 + DDA3937_RS18230 0.73 -1.7 4,161,769 + DDA3937_RS18230 0.73 -2.3 4,161,769 + DDA3937_RS18230 0.73 -0.5 4,161,769 + DDA3937_RS18230 0.73 -1.7 4,161,769 + DDA3937_RS18230 0.73 -0.1 4,161,769 + DDA3937_RS18230 0.73 +1.3 4,161,770 - DDA3937_RS18230 0.73 +1.7 4,161,770 - DDA3937_RS18230 0.73 -1.7 4,161,770 - DDA3937_RS18230 0.73 +0.8 4,161,838 + DDA3937_RS18230 0.76 -0.9 4,162,015 + DDA3937_RS18230 0.83 -0.9 4,162,015 + DDA3937_RS18230 0.83 +2.0 4,162,042 + DDA3937_RS18230 0.84 -1.2 4,162,063 + DDA3937_RS18230 0.85 +2.0 4,162,063 + DDA3937_RS18230 0.85 +1.1 4,162,063 + DDA3937_RS18230 0.85 +2.0 4,162,063 + DDA3937_RS18230 0.85 -1.6 4,162,064 - DDA3937_RS18230 0.85 -2.4 4,162,108 + +0.4 4,162,108 + DDA3937_RS18230 0.87 +1.7 4,162,166 + DDA3937_RS18230 0.90 -2.5 4,162,205 - +0.4 4,162,246 + +0.7 4,162,246 + -2.3 4,162,246 + +1.0 4,162,246 + -0.9 4,162,246 + -1.7 4,162,246 + +0.4 4,162,246 + -1.5 4,162,246 + -0.0 4,162,246 + +2.3 4,162,246 + -2.0 4,162,247 - +1.3 4,162,247 - -0.6 4,162,247 - +0.3 4,162,247 - -1.7 4,162,247 - -0.7 4,162,247 - -2.0 4,162,247 - -2.2 4,162,303 + +1.0 4,162,304 - -0.4 4,162,304 - -1.5 4,162,312 + -1.9 4,162,313 - -0.5 4,162,313 - +0.4 4,162,347 + -0.0 4,162,347 + -2.4 4,162,348 - -1.9 4,162,348 - +0.0 4,162,377 + -2.4 4,162,377 + -0.5 4,162,377 + +1.4 4,162,378 - -0.4 4,162,378 - +0.6 4,162,404 - -1.1 4,162,404 - -0.3 4,162,408 + -0.9 4,162,409 - -0.9 4,162,409 - -2.0 4,162,461 - +0.1 4,162,461 - -1.8 4,162,505 + -2.3 4,162,506 - -0.2 4,162,520 + +0.7 4,162,520 + +1.0 4,162,520 + +1.0 4,162,521 - -1.9 4,162,521 - -0.6 4,162,521 - -0.0 4,162,607 + -1.8 4,162,674 + +0.3 4,162,675 - +1.3 4,162,675 - +1.0 4,162,675 - -1.3 4,162,675 - -2.9 4,162,681 + +2.0 4,162,682 - +0.1 4,162,690 + -0.9 4,162,690 + -1.4 4,162,690 + -1.4 4,162,691 - +0.1 4,162,691 - -1.3 4,162,691 - -2.2 4,162,808 + +3.0 4,162,809 - -0.4 4,162,858 + -0.5 4,162,859 - +0.5 4,162,865 - -1.4 4,162,887 + +1.7 4,162,888 - -1.0 4,162,888 - +0.3 4,162,888 - +0.1 4,162,928 + +0.7 4,162,928 + -1.7 4,162,928 + -0.9 4,162,928 + +0.0 4,162,928 + +0.2 4,162,928 + -2.3 4,162,928 + +1.0 4,162,928 + +1.6 4,162,929 - -1.5 4,162,929 - -0.0 4,162,929 - +2.1 4,162,929 - -1.5 4,163,005 + DDA3937_RS18235 0.11 +1.7 4,163,005 + DDA3937_RS18235 0.11 +0.5 4,163,006 - DDA3937_RS18235 0.11 +0.1 4,163,455 - DDA3937_RS18235 0.27 -1.0 4,163,536 - DDA3937_RS18235 0.29 -0.6 4,163,564 + DDA3937_RS18235 0.30 +1.0 4,163,564 + DDA3937_RS18235 0.30 -1.0 4,163,564 + DDA3937_RS18235 0.30 -1.0 4,163,565 - DDA3937_RS18235 0.30 -0.8 4,163,694 - DDA3937_RS18235 0.35 +0.6 4,163,694 - DDA3937_RS18235 0.35 +0.3 4,163,694 - DDA3937_RS18235 0.35 +1.1 4,163,723 + DDA3937_RS18235 0.36 +1.1 4,163,724 - DDA3937_RS18235 0.36 -1.0 4,164,008 + DDA3937_RS18235 0.46 -2.6 4,164,008 + DDA3937_RS18235 0.46 +1.4 4,164,009 - DDA3937_RS18235 0.46 +0.2 4,164,098 + DDA3937_RS18235 0.49 -0.0 4,164,099 - DDA3937_RS18235 0.49 -0.2 4,164,247 - DDA3937_RS18235 0.54 +0.2 4,164,247 - DDA3937_RS18235 0.54 +1.1 4,164,247 - DDA3937_RS18235 0.54 +2.0 4,164,323 + DDA3937_RS18235 0.57 -0.6 4,164,324 - DDA3937_RS18235 0.57 -0.1 4,164,324 - DDA3937_RS18235 0.57 +2.9 4,164,426 + DDA3937_RS18235 0.60 -1.4 4,164,426 + DDA3937_RS18235 0.60 -0.9 4,164,427 - DDA3937_RS18235 0.60 -0.8 4,164,427 - DDA3937_RS18235 0.60 +0.2 4,164,512 + DDA3937_RS18235 0.63 +0.2 4,164,513 - DDA3937_RS18235 0.63 +3.5 4,164,617 + DDA3937_RS18235 0.67 +0.7 4,164,631 + DDA3937_RS18235 0.67 -0.2 4,164,859 + DDA3937_RS18235 0.75 +3.8 4,164,913 + DDA3937_RS18235 0.77 -1.0 4,164,913 + DDA3937_RS18235 0.77 +0.6 4,164,913 + DDA3937_RS18235 0.77 +0.6 4,164,913 + DDA3937_RS18235 0.77 +0.1 4,164,913 + DDA3937_RS18235 0.77 +0.3 4,164,913 + DDA3937_RS18235 0.77 -1.2 4,164,913 + DDA3937_RS18235 0.77 +0.0 4,164,914 - DDA3937_RS18235 0.77 -0.9 4,164,914 - DDA3937_RS18235 0.77 -1.4 4,164,914 - DDA3937_RS18235 0.77 -0.6 4,164,914 - DDA3937_RS18235 0.77 -0.0 4,164,914 - DDA3937_RS18235 0.77 -0.6 4,164,914 - DDA3937_RS18235 0.77 -1.1 4,165,083 - DDA3937_RS18235 0.83 -0.4 4,165,136 + DDA3937_RS18235 0.85 +1.8 4,165,136 + DDA3937_RS18235 0.85 -1.3 4,165,136 + DDA3937_RS18235 0.85 +1.2 4,165,136 + DDA3937_RS18235 0.85 +0.3 4,165,137 - DDA3937_RS18235 0.85 -1.1 4,165,291 + DDA3937_RS18235 0.90 +1.9 4,165,583 + -0.9 4,165,583 + +0.7 4,165,601 + -2.1 4,165,601 + +0.4 4,165,601 + +0.3 4,165,601 + +0.9 4,165,601 + -2.5 4,165,601 + -1.2 4,165,601 + -2.6 4,165,601 + -2.8 4,165,602 - -1.0 4,165,602 - -1.2 4,165,603 + -2.1 4,165,603 + +0.4 4,165,603 + -2.0 4,165,603 + -2.2 4,165,604 - +0.0 4,165,604 - -0.4 4,165,604 - +0.4 4,165,604 - -0.9 4,165,605 + -1.4 4,165,605 + +0.4 4,165,605 + +1.1 4,165,605 + +0.9 4,165,605 + -0.4 4,165,606 - +0.0 4,165,606 - +0.9 4,165,606 - -1.6 4,165,606 - -1.1 4,165,606 - +0.9 4,165,606 - +2.8 4,165,606 - +0.5 4,165,606 - +1.2 4,165,606 - -2.4 4,165,659 + -1.5 4,165,660 - +1.1 4,165,781 + DDA3937_RS18240 0.20 +0.7 4,165,781 + DDA3937_RS18240 0.20 -0.4 4,165,781 + DDA3937_RS18240 0.20 -1.1 4,165,781 + DDA3937_RS18240 0.20 +1.5 4,165,782 - -0.1 4,165,782 - DDA3937_RS18240 0.20 -2.2 4,165,782 - DDA3937_RS18240 0.20 -2.8 4,165,782 - DDA3937_RS18240 0.20 -2.4 4,165,782 - DDA3937_RS18240 0.20 -0.9 4,165,782 - DDA3937_RS18240 0.20 -2.2 4,165,782 - DDA3937_RS18240 0.20 -1.1 4,165,929 + DDA3937_RS18240 0.43 -0.6 4,165,929 + DDA3937_RS18240 0.43 -3.0 4,165,930 - DDA3937_RS18240 0.43 -0.2 4,165,930 - DDA3937_RS18240 0.43 -2.4 4,165,930 - DDA3937_RS18240 0.43 -0.3 4,165,930 - DDA3937_RS18240 0.43 -1.8 4,166,185 - DDA3937_RS18240 0.82 +0.1 4,166,185 - DDA3937_RS18240 0.82 -0.4 4,166,185 - DDA3937_RS18240 0.82 -0.1 4,166,264 + -1.1 4,166,351 - +0.0 4,166,395 + -2.4 4,166,395 + -0.1 4,166,395 + -0.4 4,166,396 - -0.8 4,166,396 - +0.3 4,166,396 - -1.5 4,166,402 - -0.4 4,166,414 + -1.1 4,166,559 - DDA3937_RS18245 0.20 +0.9
Or see this region's nucleotide sequence