Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18210

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,154,498	+		DDA3937_RS18200	0.65	+1.4
4,154,499	-		DDA3937_RS18200	0.65	-1.6
4,154,531	+		DDA3937_RS18200	0.74	-1.8
4,154,581	+		DDA3937_RS18200	0.88	+2.0
4,154,590	-				-2.0
4,154,594	-				-1.4
4,154,609	-				-1.5
4,154,627	+				+0.4
4,154,628	-				-2.1
4,154,635	+				-0.6
4,154,658	+				+1.5
4,154,662	+				+1.3
4,154,662	+				+1.4
4,154,663	-				+0.6
4,154,672	-				+0.2
4,154,708	+				-0.2
4,154,732	+				+0.1
4,154,733	-				+0.0
4,154,733	-				-1.5
4,154,737	+				+0.3
4,154,754	-				-1.1
4,154,754	-				-1.1
4,154,755	+				-0.4
4,154,755	+				-2.4
4,154,755	+				+0.6
4,154,755	+				-0.3
4,154,756	-				-1.0
4,154,756	-				-1.6
4,154,756	-				-2.5
4,154,756	-				-1.1
4,154,756	-				-2.8
4,154,756	-				-2.6
4,154,808	+				-1.0
4,154,808	+				-1.1
4,154,808	+				+1.2
4,154,808	+				-0.3
4,154,808	+				-1.8
4,154,809	-				+0.9
4,154,866	+		DDA3937_RS18205	0.10	-0.0
4,154,867	-		DDA3937_RS18205	0.10	+0.5
4,154,887	-		DDA3937_RS18205	0.13	+0.2
4,154,931	-		DDA3937_RS18205	0.20	-1.6
4,155,035	+		DDA3937_RS18205	0.34	+3.9
4,155,035	+		DDA3937_RS18205	0.34	-1.6
4,155,035	+		DDA3937_RS18205	0.34	-2.4
4,155,035	+		DDA3937_RS18205	0.34	-0.9
4,155,036	-		DDA3937_RS18205	0.35	-1.5
4,155,147	+		DDA3937_RS18205	0.51	+0.0
4,155,148	-		DDA3937_RS18205	0.51	-1.1
4,155,165	+		DDA3937_RS18205	0.53	-1.8
4,155,165	+		DDA3937_RS18205	0.53	-0.8
4,155,169	+		DDA3937_RS18205	0.54	-1.2
4,155,169	+		DDA3937_RS18205	0.54	+1.5
4,155,170	-		DDA3937_RS18205	0.54	-2.1
4,155,170	-		DDA3937_RS18205	0.54	-0.3
4,155,170	-		DDA3937_RS18205	0.54	+0.8
4,155,189	+		DDA3937_RS18205	0.57	-2.1
4,155,189	+		DDA3937_RS18205	0.57	-1.8
4,155,189	+		DDA3937_RS18205	0.57	+0.2
4,155,190	-		DDA3937_RS18205	0.57	+0.3
4,155,190	-		DDA3937_RS18205	0.57	-0.9
4,155,190	-		DDA3937_RS18205	0.57	+1.2
4,155,190	-		DDA3937_RS18205	0.57	-1.4
4,155,190	-		DDA3937_RS18205	0.57	-0.2
4,155,190	-		DDA3937_RS18205	0.57	-0.2
4,155,301	+		DDA3937_RS18205	0.73	-1.9
4,155,302	-		DDA3937_RS18205	0.73	-0.4
4,155,302	-		DDA3937_RS18205	0.73	-2.1
4,155,302	-		DDA3937_RS18205	0.73	+1.3
4,155,441	-				-0.5
4,155,460	-				-0.9
4,155,484	+				+1.6
4,155,485	-				-0.8
4,155,485	-				+0.4
4,155,490	+				+0.1
4,155,574	+		DDA3937_RS18210	0.12	-1.0
4,155,620	+		DDA3937_RS18210	0.18	+0.9
4,155,620	+		DDA3937_RS18210	0.18	-0.4
4,155,620	+		DDA3937_RS18210	0.18	+1.1
4,155,621	-		DDA3937_RS18210	0.18	-1.9
4,155,621	-		DDA3937_RS18210	0.18	-0.2
4,155,621	-		DDA3937_RS18210	0.18	-1.1
4,155,621	-		DDA3937_RS18210	0.18	-0.3
4,155,733	-		DDA3937_RS18210	0.32	+0.8
4,155,738	+		DDA3937_RS18210	0.33	-0.8
4,155,738	+		DDA3937_RS18210	0.33	-0.1
4,155,738	+		DDA3937_RS18210	0.33	-0.8
4,155,738	+		DDA3937_RS18210	0.33	-2.4
4,155,738	+		DDA3937_RS18210	0.33	-1.7
4,155,738	+		DDA3937_RS18210	0.33	+0.2
4,155,738	+		DDA3937_RS18210	0.33	-1.8
4,155,739	-		DDA3937_RS18210	0.33	-1.5
4,155,841	+		DDA3937_RS18210	0.46	-1.7
4,155,936	-				+0.4
4,156,007	+		DDA3937_RS18210	0.67	-1.4
4,156,094	+		DDA3937_RS18210	0.78	-1.0
4,156,094	+		DDA3937_RS18210	0.78	+1.1
4,156,094	+		DDA3937_RS18210	0.78	-1.6
4,156,095	-		DDA3937_RS18210	0.78	+0.9
4,156,096	+		DDA3937_RS18210	0.79	-0.2
4,156,096	+		DDA3937_RS18210	0.79	+0.4
4,156,096	+		DDA3937_RS18210	0.79	-1.5
4,156,096	+		DDA3937_RS18210	0.79	-0.2
4,156,097	-		DDA3937_RS18210	0.79	+0.1
4,156,097	-		DDA3937_RS18210	0.79	-2.1
4,156,097	-		DDA3937_RS18210	0.79	-0.4
4,156,097	-		DDA3937_RS18210	0.79	+1.9
4,156,124	+		DDA3937_RS18210	0.82	-0.6
4,156,125	-		DDA3937_RS18210	0.82	-1.1
4,156,125	-		DDA3937_RS18210	0.82	-2.4
4,156,498	+		DDA3937_RS18215	0.24	-3.6
4,156,499	-		DDA3937_RS18215	0.24	-2.5
4,156,499	-		DDA3937_RS18215	0.24	+0.5
4,156,499	-		DDA3937_RS18215	0.24	-2.2
4,156,499	-		DDA3937_RS18215	0.24	-0.7
4,156,641	+		DDA3937_RS18215	0.37	+2.4
4,156,641	+		DDA3937_RS18215	0.37	-0.4
4,156,642	-		DDA3937_RS18215	0.37	-2.9
4,156,703	+		DDA3937_RS18215	0.43	-2.2
4,156,712	+		DDA3937_RS18215	0.44	-1.2
4,156,712	+		DDA3937_RS18215	0.44	+1.0
4,156,713	-		DDA3937_RS18215	0.44	+0.7
4,156,767	-		DDA3937_RS18215	0.49	+0.9
4,156,773	+		DDA3937_RS18215	0.50	-0.0
4,156,773	+		DDA3937_RS18215	0.50	+0.9
4,156,774	-		DDA3937_RS18215	0.50	-0.2
4,156,774	-		DDA3937_RS18215	0.50	+1.0
4,156,774	-				+1.0
4,156,774	-		DDA3937_RS18215	0.50	+0.7
4,156,886	+		DDA3937_RS18215	0.61	+0.0
4,157,069	+		DDA3937_RS18215	0.78	-2.6
4,157,069	+		DDA3937_RS18215	0.78	-0.6
4,157,069	+		DDA3937_RS18215	0.78	-2.4
4,157,069	+		DDA3937_RS18215	0.78	-1.5
4,157,070	-		DDA3937_RS18215	0.78	-0.9
4,157,070	-		DDA3937_RS18215	0.78	-1.0
4,157,070	-		DDA3937_RS18215	0.78	-0.2
4,157,070	-		DDA3937_RS18215	0.78	-2.4
4,157,138	+		DDA3937_RS18215	0.85	+0.6
4,157,138	+		DDA3937_RS18215	0.85	-1.0
4,157,139	-		DDA3937_RS18215	0.85	+2.0
4,157,139	-		DDA3937_RS18215	0.85	+0.1
4,157,139	-		DDA3937_RS18215	0.85	-2.1
4,157,139	-		DDA3937_RS18215	0.85	+0.0
4,157,139	-		DDA3937_RS18215	0.85	-1.0
4,157,139	-		DDA3937_RS18215	0.85	-2.7
4,157,139	-		DDA3937_RS18215	0.85	-2.9
4,157,172	+		DDA3937_RS18215	0.88	-1.0
4,157,190	+		DDA3937_RS18215	0.90	-2.3
4,157,190	+		DDA3937_RS18215	0.90	-0.6
4,157,190	+		DDA3937_RS18215	0.90	-0.4
4,157,191	-				-2.1
4,157,191	-				-2.7
4,157,192	+				-0.9
4,157,192	+				+0.4
4,157,192	+				-2.3
4,157,193	-				-1.3
4,157,256	-				+1.4