Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17480

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,975,669	-				-0.3
3,975,843	+				+0.7
3,975,844	-				-1.8
3,976,006	+				-0.5
3,976,025	-				-0.6
3,976,025	-				-1.5
3,976,025	-				-0.3
3,976,025	-				+0.3
3,976,025	-				-1.4
3,976,031	+				-1.9
3,976,031	+				-2.3
3,976,077	+				-0.8
3,976,077	+				-0.8
3,976,077	+				-0.4
3,976,078	-				+1.6
3,976,078	-				-1.9
3,976,078	-				-0.9
3,976,078	-				-2.3
3,976,078	-				+0.4
3,976,091	+				-3.4
3,976,092	-				+0.0
3,976,092	-				+0.2
3,976,120	+				-1.2
3,976,120	+				-0.6
3,976,120	+				-0.3
3,976,120	+				-1.0
3,976,120	+				-0.3
3,976,120	+				-0.6
3,976,121	-				-0.8
3,976,121	-				-2.1
3,976,121	-				-1.4
3,976,122	+				+1.4
3,976,122	+				-2.4
3,976,122	+				-0.0
3,976,122	+				-1.2
3,976,122	+				-0.5
3,976,122	+				-1.7
3,976,122	+				+0.4
3,976,122	+				-2.1
3,976,122	+				+0.4
3,976,122	+				-0.1
3,976,123	-				+0.2
3,976,123	-				-0.2
3,976,123	-				+1.0
3,976,123	-				-2.1
3,976,123	-				-0.6
3,976,123	-				-0.9
3,976,189	+				-1.3
3,976,189	+				-1.0
3,976,189	+				-1.8
3,976,189	+				+0.8
3,976,190	-				+1.4
3,976,190	-				-1.9
3,976,190	-				+0.9
3,976,216	+				-1.8
3,976,216	+				+0.4
3,976,217	-				+0.7
3,976,217	-				-1.5
3,976,217	-				+1.8
3,976,217	-				-1.5
3,976,227	-				-0.3
3,976,234	+				-0.3
3,976,234	+				-2.1
3,976,234	+				+0.1
3,976,235	-				+0.4
3,976,241	+				+1.8
3,976,241	+				-1.7
3,976,242	-				+1.5
3,976,248	-				-0.8
3,976,248	-				-0.9
3,976,290	+				-2.0
3,976,290	+				-1.6
3,976,301	+				-0.2
3,976,305	+				+1.0
3,976,305	+				+0.7
3,976,305	+				+1.2
3,976,305	+				-1.9
3,976,305	+				-0.8
3,976,305	+				-2.6
3,976,305	+				+0.1
3,976,306	-				-2.3
3,976,326	+				-0.5
3,976,327	-				-1.5
3,976,405	+		DDA3937_RS17480	0.13	-1.1
3,976,453	+		DDA3937_RS17480	0.18	-2.5
3,976,453	+		DDA3937_RS17480	0.18	+0.6
3,976,462	+		DDA3937_RS17480	0.19	-0.6
3,976,463	-		DDA3937_RS17480	0.19	-0.2
3,976,556	-		DDA3937_RS17480	0.28	-0.6
3,976,732	+		DDA3937_RS17480	0.46	-0.3
3,976,733	-		DDA3937_RS17480	0.46	+0.0
3,976,785	+		DDA3937_RS17480	0.51	+0.7
3,976,786	-		DDA3937_RS17480	0.51	-0.7
3,976,796	+		DDA3937_RS17480	0.52	-0.8
3,976,797	-		DDA3937_RS17480	0.52	+0.4
3,976,797	-		DDA3937_RS17480	0.52	+0.1
3,976,877	-		DDA3937_RS17480	0.60	-1.2
3,976,914	+		DDA3937_RS17480	0.64	-0.3
3,976,915	-		DDA3937_RS17480	0.64	-0.7
3,976,996	+		DDA3937_RS17480	0.72	-0.9
3,976,997	-		DDA3937_RS17480	0.72	+0.6
3,977,089	+		DDA3937_RS17480	0.81	+0.2
3,977,089	+		DDA3937_RS17480	0.81	+1.0
3,977,089	+		DDA3937_RS17480	0.81	-0.1
3,977,090	-		DDA3937_RS17480	0.81	-3.3
3,977,090	-		DDA3937_RS17480	0.81	-0.1
3,977,095	+		DDA3937_RS17480	0.82	+1.2
3,977,095	+		DDA3937_RS17480	0.82	-1.1
3,977,095	+		DDA3937_RS17480	0.82	-0.6
3,977,095	+		DDA3937_RS17480	0.82	+2.9
3,977,095	+		DDA3937_RS17480	0.82	-3.2
3,977,096	-		DDA3937_RS17480	0.82	+1.8
3,977,129	+		DDA3937_RS17480	0.85	-0.9
3,977,148	+		DDA3937_RS17480	0.87	-3.5
3,977,148	+		DDA3937_RS17480	0.87	-0.2
3,977,148	+		DDA3937_RS17480	0.87	-2.8
3,977,149	-		DDA3937_RS17480	0.87	+3.2
3,977,217	+				-0.7
3,977,288	+				-0.6
3,977,288	+				+0.2
3,977,383	-				+0.8
3,977,419	+				+0.3
3,977,420	-				+1.8
3,977,424	+				-2.1
3,977,424	+				+0.5
3,977,488	+				+0.6
3,977,501	-				+1.0
3,977,538	+		DDA3937_RS17485	0.25	-1.3
3,977,538	+		DDA3937_RS17485	0.25	-1.5
3,977,539	-		DDA3937_RS17485	0.26	+1.8
3,977,539	-		DDA3937_RS17485	0.26	-1.3
3,977,570	-		DDA3937_RS17485	0.37	-0.6
3,977,620	-		DDA3937_RS17485	0.55	+0.6
3,977,710	+		DDA3937_RS17485	0.88	-0.0
3,977,711	-		DDA3937_RS17485	0.88	-1.2
3,977,741	+				-1.0
3,977,741	+				+0.4
3,977,741	+				-1.6
3,977,742	-				-2.2
3,977,742	-				-1.8
3,977,742	-				+1.1
3,977,848	+				-3.4
3,977,848	+				-1.7
3,977,849	-				-1.8
3,977,849	-				-2.0
3,977,928	+				-2.5
3,977,928	+				+0.5
3,977,929	-				-2.3
3,977,929	-				+1.4
3,977,929	-				+2.0
3,977,932	-				-1.3
3,977,970	+				-2.5
3,977,971	-				-1.4
3,977,971	-				-1.6
3,977,975	+				+0.3
3,977,975	+				-2.7
3,977,975	+				-1.1
3,977,975	+				-1.8
3,977,975	+				-2.4
3,977,975	+				-0.6
3,977,976	-				-2.2
3,977,976	-				-1.3
3,977,976	-				-0.8
3,977,976	-				+2.0
3,977,979	+				+0.2
3,977,979	+				-0.5
3,977,979	+				-0.6
3,977,979	+				-2.9
3,977,979	+				-0.0
3,977,979	+				+2.0
3,977,979	+				+0.4
3,977,979	+				+0.2
3,977,979	+				-2.2
3,977,979	+				+0.8
3,977,979	+				+1.4
3,977,979	+				+1.7
3,977,979	+				-0.0
3,977,980	-				-0.3
3,977,980	-				-3.0
3,977,980	-				-3.1
3,977,980	-				-1.3
3,977,980	-				+0.7
3,977,980	-				-0.5
3,977,980	-				-3.2
3,977,980	-				-1.2
3,977,980	-				-0.6
3,977,980	-				-1.2
3,977,980	-				+0.5
3,977,980	-				-0.0
3,977,995	-				-1.0
3,977,995	-				-0.3
3,977,995	-				+1.1
3,978,000	-				+0.1
3,978,025	-				-2.2
3,978,025	-				-0.6
3,978,027	+				-1.0
3,978,049	-				-1.6
3,978,051	+				-2.1
3,978,051	+				-1.6
3,978,052	-				-2.4
3,978,052	-				-1.2
3,978,127	+				-1.0
3,978,128	-				+1.4
3,978,128	-				-1.4
3,978,128	-				+0.9
3,978,128	-				-1.1
3,978,145	+				-1.3
3,978,145	+				-3.1
3,978,145	+				-2.8
3,978,145	+				+0.7
3,978,145	+				+0.5
3,978,145	+				+0.5
3,978,146	-				-1.7
3,978,146	-				-0.5
3,978,146	-				+0.1
3,978,146	-				-0.4
3,978,146	-				+1.9
3,978,191	+				-0.0
3,978,192	-				-2.0
3,978,192	-				+1.4
3,978,195	+				+0.4
3,978,195	+				-0.6
3,978,195	+				+1.1
3,978,195	+				-2.8