Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17065

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,884,748	+				+0.1
3,884,748	+				+1.1
3,884,749	-				+2.4
3,884,768	-				+0.1
3,884,768	-				-1.9
3,884,768	-				+1.0
3,884,813	+				-0.2
3,884,813	+				+0.3
3,884,813	+				-2.4
3,884,813	+				+0.8
3,884,814	-				-1.3
3,884,814	-				+0.5
3,884,816	+				+1.3
3,884,816	+				+1.5
3,884,817	-				-1.0
3,884,817	-				-0.5
3,884,817	-				-1.5
3,884,839	+				-1.5
3,884,857	-				-1.4
3,884,904	+				-0.2
3,884,904	+				-0.1
3,884,904	+				-2.9
3,884,904	+				-1.6
3,884,904	+				+2.1
3,884,904	+				-3.5
3,884,905	-				-0.1
3,884,905	-				-0.2
3,884,905	-				-1.2
3,884,905	-				-0.8
3,884,905	-				+0.2
3,884,905	-				+0.9
3,884,905	-				+0.3
3,884,905	-				-0.5
3,884,905	-				-2.3
3,884,905	-				-0.8
3,884,905	-				-1.8
3,884,906	+				-0.4
3,884,906	+				+2.2
3,884,906	+				+1.5
3,884,907	-				+0.4
3,884,907	-				+0.7
3,884,919	+				+0.0
3,884,919	+				-0.4
3,884,919	+				-0.2
3,884,919	+				-0.9
3,884,919	+				-0.5
3,884,920	-				+1.2
3,884,920	-				+0.3
3,884,920	-				-3.2
3,884,920	-				-1.2
3,884,920	-				-2.7
3,884,954	+				-0.9
3,884,954	+				-0.4
3,884,957	+				-0.7
3,884,957	+				-1.1
3,884,957	+				-1.2
3,884,958	-				-0.4
3,884,958	-				-0.8
3,885,034	+				-1.4
3,885,034	+				+1.8
3,885,035	-				-2.2
3,885,035	-				-1.9
3,885,035	-				-2.2
3,885,035	-				-2.2
3,885,035	-				+0.4
3,885,035	-				-0.9
3,885,036	+				+1.1
3,885,036	+				-0.1
3,885,081	-				-0.2
3,885,237	-				+0.3
3,885,293	+				+0.5
3,885,319	+				-1.7
3,885,319	+				+0.1
3,885,319	+				+2.2
3,885,319	+				-1.2
3,885,320	-				+0.9
3,885,320	-				+0.3
3,885,320	-				-1.0
3,885,320	-				-0.4
3,885,320	-				+0.8
3,885,320	-				-2.1
3,885,320	-				-1.7
3,885,320	-				+0.9
3,885,320	-				+0.3
3,885,320	-				+0.6
3,885,320	-				-0.3
3,885,322	-				-0.4
3,885,322	-				-2.4
3,885,322	-				-0.4
3,885,343	+				-0.9
3,885,343	+				+0.2
3,885,344	-				-1.4
3,885,346	+				+0.5
3,885,346	+				+0.6
3,885,353	-				-0.7
3,885,377	-				-2.5
3,885,378	+				-3.2
3,885,379	-				-1.4
3,885,379	-				-1.2
3,885,395	-				-0.9
3,885,395	-				-0.4
3,885,395	-				-0.4
3,885,395	-				-0.1
3,885,395	-				-0.7
3,885,395	-				-0.9
3,885,397	-				-3.5
3,885,397	-				-1.8
3,885,399	-				-0.4
3,885,399	-				-2.4
3,885,603	-				-1.4
3,885,695	+				-1.7
3,885,725	+				+0.3
3,885,734	+				-1.8
3,885,734	+				-1.2
3,885,734	+				-0.2
3,885,734	+				+1.6
3,885,734	+				-0.3
3,885,734	+				-2.2
3,885,735	-				+1.0
3,885,735	-				+1.3
3,885,735	-				-1.0
3,885,735	-				+0.7
3,885,735	-				+0.8
3,885,735	-				+0.6
3,885,736	+				+2.3
3,885,736	+				-0.3
3,885,736	+				-0.1
3,885,736	+				-1.7
3,885,736	+				-0.1
3,885,736	+				-2.2
3,885,737	-				-1.5
3,885,741	+				-0.1
3,885,741	+				-0.9
3,885,741	+				-1.1
3,885,741	+				-0.8
3,885,741	+				-1.5
3,885,741	+				-2.6
3,885,741	+				+1.6
3,885,741	+				-1.4
3,885,741	+				+0.0
3,885,741	+				-1.5
3,885,741	+				-0.1
3,885,741	+				-1.3
3,885,741	+				+1.4
3,885,742	-				-0.6
3,885,742	-				+1.5
3,885,742	-				+0.3
3,885,742	-				-1.7
3,885,742	-				-1.5
3,885,742	-				+0.1
3,885,742	-				-2.8
3,885,742	-				-0.2
3,885,742	-				+0.7
3,885,742	-				-2.3
3,885,742	-				+1.3
3,885,742	-				-0.7
3,885,742	-				-2.1
3,885,742	-				-0.4
3,885,750	+				-0.6
3,885,765	+				-2.2
3,885,766	-				-0.9
3,885,770	+				+0.6
3,885,770	+				+2.4
3,885,770	+				-0.7
3,885,770	+				+0.9
3,885,770	+				+0.1
3,885,770	+				-2.0
3,885,770	+				-2.9
3,885,770	+				-0.7
3,885,771	-				+1.3
3,885,771	-				+0.3
3,885,771	-				-1.1
3,885,771	-				+1.4
3,885,771	-				-3.4
3,885,771	-				+0.3
3,885,803	-				+0.6
3,885,803	-				-0.4
3,885,804	+				-0.2
3,885,804	+				-1.2
3,885,805	-				+0.7
3,885,805	-				-0.2
3,885,905	+		DDA3937_RS17065	0.10	-0.0
3,885,905	+		DDA3937_RS17065	0.10	-1.2
3,885,930	-		DDA3937_RS17065	0.12	-1.1
3,886,112	-		DDA3937_RS17065	0.23	-1.1
3,886,113	+		DDA3937_RS17065	0.23	-1.1
3,886,113	+		DDA3937_RS17065	0.23	-1.1
3,886,114	-		DDA3937_RS17065	0.23	-0.9
3,886,114	-		DDA3937_RS17065	0.23	+0.3
3,886,127	-		DDA3937_RS17065	0.24	+1.1
3,886,131	+		DDA3937_RS17065	0.24	-3.7
3,886,173	+		DDA3937_RS17065	0.27	-0.9
3,886,174	-		DDA3937_RS17065	0.27	-0.4
3,886,210	+		DDA3937_RS17065	0.29	-0.4
3,886,210	+		DDA3937_RS17065	0.29	-2.0
3,886,211	-		DDA3937_RS17065	0.29	-2.0
3,886,288	+		DDA3937_RS17065	0.34	+1.6
3,886,288	+		DDA3937_RS17065	0.34	-0.2
3,886,289	-		DDA3937_RS17065	0.34	+2.2
3,886,289	-		DDA3937_RS17065	0.34	+0.4
3,886,289	-		DDA3937_RS17065	0.34	+1.9
3,886,576	-		DDA3937_RS17065	0.52	+0.2
3,886,691	+		DDA3937_RS17065	0.60	-1.8
3,886,691	+		DDA3937_RS17065	0.60	-0.1
3,886,692	-		DDA3937_RS17065	0.60	+1.4
3,886,813	+		DDA3937_RS17065	0.67	-1.1
3,886,822	+		DDA3937_RS17065	0.68	+1.2
3,886,823	-		DDA3937_RS17065	0.68	+1.0
3,886,918	-		DDA3937_RS17065	0.74	+0.7
3,886,994	-		DDA3937_RS17065	0.79	-1.5
3,887,090	-		DDA3937_RS17065	0.85	+0.4
3,887,090	-		DDA3937_RS17065	0.85	-1.2
3,887,225	+				+0.4
3,887,226	-				-0.3
3,887,339	-				-0.9
3,887,339	-				-0.4
3,887,342	+				-2.3
3,887,343	-				-1.1
3,887,343	-				+0.1
3,887,411	+				-0.9
3,887,440	+				+0.9
3,887,440	+				-2.0
3,887,441	-				+1.3
3,887,444	+				-2.0
3,887,444	+				-0.1
3,887,445	-				+0.1
3,887,445	-				-0.4
3,887,448	+				-0.4
3,887,448	+				-2.1
3,887,448	+				-1.8
3,887,449	-				-2.6
3,887,449	-				-0.3
3,887,450	+				-0.4
3,887,450	+				-0.7
3,887,484	-				+0.8
3,887,596	-				-2.0
3,887,648	-				-0.7
3,887,648	-				+1.3
3,887,652	+				-2.1
3,887,734	+				-1.8
3,887,735	-				+1.3
3,887,788	+				-0.7
3,887,789	-				-1.7
3,887,789	-				-1.7
3,887,807	+				-3.5
3,887,846	+				-2.0
3,887,888	+				+0.1
3,887,890	+				-0.7
3,887,890	+				-2.2
3,887,891	-				-3.0
3,887,891	-				+0.9
3,887,891	-				+1.2
3,887,893	+				-0.3
3,887,894	-				+1.3
3,887,937	+				-0.4
3,887,937	+				+0.3
3,887,941	-				+0.1
3,887,941	-				-2.5
3,887,953	+				+1.1
3,887,953	+				-0.3
3,887,953	+				+0.3
3,887,953	+				-2.5
3,887,953	+				+0.9
3,887,954	-				-0.7
3,887,973	+				-1.3
3,887,973	+				+1.9
3,887,973	+				-0.3
3,887,973	+				-1.8
3,887,973	+				-1.1
3,887,978	+				+1.1
3,887,978	+				+1.4
3,887,979	-				-3.3
3,887,979	-				-1.7
3,887,997	+				-1.1
3,887,997	+				-0.1
3,888,081	+		DDA3937_RS17070	0.10	-0.9
3,888,082	-		DDA3937_RS17070	0.11	+1.7
3,888,130	+		DDA3937_RS17070	0.14	-0.1
3,888,130	+		DDA3937_RS17070	0.14	+1.8
3,888,130	+		DDA3937_RS17070	0.14	+0.5
3,888,197	-		DDA3937_RS17070	0.18	+1.9
3,888,226	+		DDA3937_RS17070	0.20	-3.2
3,888,234	+		DDA3937_RS17070	0.20	-0.4
3,888,234	+		DDA3937_RS17070	0.20	+0.6
3,888,235	-		DDA3937_RS17070	0.21	-1.1
3,888,235	-		DDA3937_RS17070	0.21	+0.3
3,888,252	+		DDA3937_RS17070	0.22	+0.1
3,888,252	+		DDA3937_RS17070	0.22	+0.3
3,888,252	+		DDA3937_RS17070	0.22	-0.5
3,888,253	-		DDA3937_RS17070	0.22	-0.8
3,888,268	-		DDA3937_RS17070	0.23	+1.2
3,888,307	+		DDA3937_RS17070	0.25	+0.5
3,888,308	-		DDA3937_RS17070	0.25	-1.0
3,888,308	-		DDA3937_RS17070	0.25	+0.6
3,888,317	+		DDA3937_RS17070	0.26	+2.1
3,888,318	-		DDA3937_RS17070	0.26	+0.3
3,888,324	+		DDA3937_RS17070	0.26	-0.9
3,888,324	+		DDA3937_RS17070	0.26	-0.5
3,888,325	-		DDA3937_RS17070	0.26	+1.1
3,888,325	-		DDA3937_RS17070	0.26	-2.9