Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16665

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,791,864	+		DDA3937_RS16660	0.18	+1.2
3,791,864	+		DDA3937_RS16660	0.18	-0.1
3,791,864	+		DDA3937_RS16660	0.18	-1.5
3,791,864	+		DDA3937_RS16660	0.18	+0.1
3,791,865	-		DDA3937_RS16660	0.18	-0.4
3,791,865	-		DDA3937_RS16660	0.18	+1.1
3,791,865	-		DDA3937_RS16660	0.18	+1.2
3,791,865	-		DDA3937_RS16660	0.18	-2.3
3,791,865	-		DDA3937_RS16660	0.18	+0.0
3,791,865	-		DDA3937_RS16660	0.18	+0.7
3,791,865	-		DDA3937_RS16660	0.18	-2.2
3,791,865	-		DDA3937_RS16660	0.18	-0.0
3,791,865	-		DDA3937_RS16660	0.18	+2.7
3,791,865	-		DDA3937_RS16660	0.18	-0.7
3,791,958	+		DDA3937_RS16660	0.29	+1.9
3,791,958	+		DDA3937_RS16660	0.29	+0.6
3,791,959	-		DDA3937_RS16660	0.30	-2.4
3,791,959	-		DDA3937_RS16660	0.30	+1.9
3,791,960	+		DDA3937_RS16660	0.30	+0.7
3,791,960	+		DDA3937_RS16660	0.30	+0.6
3,791,960	+		DDA3937_RS16660	0.30	-1.1
3,791,960	+		DDA3937_RS16660	0.30	-1.8
3,791,960	+		DDA3937_RS16660	0.30	-0.8
3,791,960	+		DDA3937_RS16660	0.30	-1.4
3,791,961	-		DDA3937_RS16660	0.30	-1.8
3,791,961	-		DDA3937_RS16660	0.30	-1.1
3,791,961	-		DDA3937_RS16660	0.30	-2.8
3,791,961	-		DDA3937_RS16660	0.30	+0.1
3,791,961	-		DDA3937_RS16660	0.30	-2.0
3,791,961	-		DDA3937_RS16660	0.30	-1.2
3,791,981	+		DDA3937_RS16660	0.32	+1.1
3,791,982	-		DDA3937_RS16660	0.32	-0.9
3,792,011	+		DDA3937_RS16660	0.36	+0.7
3,792,011	+		DDA3937_RS16660	0.36	-1.1
3,792,011	+		DDA3937_RS16660	0.36	-2.0
3,792,208	-		DDA3937_RS16660	0.61	-2.6
3,792,318	-		DDA3937_RS16660	0.75	-1.6
3,792,318	-		DDA3937_RS16660	0.75	+0.5
3,792,448	+				-0.9
3,792,448	+				-2.5
3,792,487	+				-2.7
3,792,533	-				-1.2
3,792,671	+				+1.8
3,792,737	-				-1.0
3,792,751	-				+0.4
3,792,824	-				+0.7
3,792,900	-		DDA3937_RS16665	0.13	-0.4
3,792,922	+		DDA3937_RS16665	0.15	-1.4
3,792,922	+		DDA3937_RS16665	0.15	-1.9
3,792,923	-		DDA3937_RS16665	0.16	-2.7
3,792,923	-		DDA3937_RS16665	0.16	-2.9
3,792,989	+		DDA3937_RS16665	0.23	+0.1
3,792,989	+		DDA3937_RS16665	0.23	-1.9
3,792,989	+		DDA3937_RS16665	0.23	-1.2
3,792,990	-		DDA3937_RS16665	0.24	-0.2
3,792,990	-		DDA3937_RS16665	0.24	-2.2
3,792,990	-		DDA3937_RS16665	0.24	-1.2
3,792,990	-		DDA3937_RS16665	0.24	-0.0
3,792,990	-		DDA3937_RS16665	0.24	-0.0
3,793,339	+		DDA3937_RS16665	0.65	-0.2
3,793,340	-		DDA3937_RS16665	0.65	-1.4
3,793,340	-		DDA3937_RS16665	0.65	+0.4
3,793,524	-		DDA3937_RS16665	0.87	-0.6
3,793,524	-		DDA3937_RS16665	0.87	-0.1
3,793,525	+		DDA3937_RS16665	0.87	-1.5
3,793,525	+		DDA3937_RS16665	0.87	-2.9
3,793,525	+		DDA3937_RS16665	0.87	-2.3
3,793,526	-		DDA3937_RS16665	0.87	-0.5
3,793,526	-		DDA3937_RS16665	0.87	-0.0
3,793,526	-		DDA3937_RS16665	0.87	-1.7
3,793,529	+		DDA3937_RS16665	0.88	-2.2
3,793,529	+		DDA3937_RS16665	0.88	-0.6
3,793,529	+		DDA3937_RS16665	0.88	+1.0
3,793,529	+		DDA3937_RS16665	0.88	-1.0
3,793,529	+		DDA3937_RS16665	0.88	-1.4
3,793,529	+		DDA3937_RS16665	0.88	-3.0
3,793,529	+		DDA3937_RS16665	0.88	+0.1
3,793,530	-		DDA3937_RS16665	0.88	-0.9
3,793,530	-		DDA3937_RS16665	0.88	+0.4
3,793,530	-		DDA3937_RS16665	0.88	-1.4
3,793,530	-		DDA3937_RS16665	0.88	-1.6
3,793,556	+				-0.7
3,793,557	-				-0.7
3,793,557	-				-1.0
3,793,597	+				-1.1
3,793,597	+				-0.0
3,793,660	+				-0.4
3,793,697	+				+0.3
3,793,697	+				+0.6
3,793,697	+				-0.7
3,793,697	+				-1.4
3,793,697	+				+0.2
3,793,697	+				-0.7
3,793,697	+				-1.5
3,793,697	+				-0.1
3,793,698	-				+0.4
3,793,698	-				-0.9
3,793,698	-				-0.4
3,793,698	-				+1.4
3,793,698	-				-2.1
3,793,698	-				+1.9
3,793,698	-				-2.6
3,793,698	-				+0.5
3,793,698	-				+0.0
3,793,698	-				-1.9
3,793,702	+				-0.0
3,793,702	+				+0.8
3,793,702	+				-0.6
3,793,702	+				+0.3
3,793,702	+				+0.4
3,793,702	+				-1.7
3,793,702	+				+0.8
3,793,702	+				+0.6
3,793,702	+				+0.2
3,793,702	+				+0.8
3,793,702	+				-2.3
3,793,702	+				+0.1
3,793,702	+				-0.7
3,793,702	+				-1.1
3,793,703	-				-2.7
3,793,703	-				-0.9
3,793,703	-				-1.2
3,793,703	-				-1.7
3,793,703	-				-1.0
3,793,703	-				-0.6
3,793,703	-				-1.5
3,793,703	-				-1.6
3,793,703	-				-1.2
3,793,703	-				-0.1
3,793,703	-				-0.9
3,793,703	-				-0.6
3,793,704	+				-2.1
3,793,705	-				+1.8
3,793,705	-				+0.3
3,793,754	-				-0.9
3,793,775	+				-1.1
3,793,775	+				+2.2
3,793,776	-				-1.2
3,793,787	+				-0.7
3,793,787	+				+1.6
3,793,787	+				-0.5
3,793,788	-				-1.5
3,793,788	-				-0.3
3,793,788	-				+1.2
3,793,788	-				-0.8
3,793,788	-				+0.5
3,793,790	+				-1.4
3,793,790	+				+1.5
3,793,791	-				-1.4
3,793,791	-				-1.2
3,793,869	+				+3.2
3,793,869	+				-0.0
3,793,869	+				+0.4
3,793,869	+				-1.0
3,793,870	-				-1.3
3,793,870	-				+0.4
3,794,051	+		DDA3937_RS16670	0.16	-1.0
3,794,051	+		DDA3937_RS16670	0.16	+1.1
3,794,051	+		DDA3937_RS16670	0.16	-1.9
3,794,051	+		DDA3937_RS16670	0.16	+0.8
3,794,051	+		DDA3937_RS16670	0.16	-0.3
3,794,051	+		DDA3937_RS16670	0.16	-0.2
3,794,051	+		DDA3937_RS16670	0.16	+0.1
3,794,052	-		DDA3937_RS16670	0.16	+1.3
3,794,052	-		DDA3937_RS16670	0.16	-2.4
3,794,052	-		DDA3937_RS16670	0.16	-1.4
3,794,052	-		DDA3937_RS16670	0.16	+1.2
3,794,052	-		DDA3937_RS16670	0.16	+0.6
3,794,053	+		DDA3937_RS16670	0.16	-2.4
3,794,053	+		DDA3937_RS16670	0.16	-0.2
3,794,053	+		DDA3937_RS16670	0.16	-1.0
3,794,053	+		DDA3937_RS16670	0.16	-1.6
3,794,053	+		DDA3937_RS16670	0.16	-0.4
3,794,053	+		DDA3937_RS16670	0.16	-1.4
3,794,053	+		DDA3937_RS16670	0.16	-0.6
3,794,053	+		DDA3937_RS16670	0.16	-2.1
3,794,054	-		DDA3937_RS16670	0.16	-2.3
3,794,054	-		DDA3937_RS16670	0.16	-0.4
3,794,054	-		DDA3937_RS16670	0.16	-0.9
3,794,054	-		DDA3937_RS16670	0.16	-0.0
3,794,054	-		DDA3937_RS16670	0.16	-1.9
3,794,054	-		DDA3937_RS16670	0.16	+1.7
3,794,054	-		DDA3937_RS16670	0.16	-1.4
3,794,054	-		DDA3937_RS16670	0.16	-1.4
3,794,054	-		DDA3937_RS16670	0.16	-0.6
3,794,303	+		DDA3937_RS16670	0.32	+0.5
3,794,303	+		DDA3937_RS16670	0.32	-0.9
3,794,303	+		DDA3937_RS16670	0.32	-0.6
3,794,304	-		DDA3937_RS16670	0.32	-0.0
3,794,307	+		DDA3937_RS16670	0.32	-0.6
3,794,307	+		DDA3937_RS16670	0.32	+2.0
3,794,307	+		DDA3937_RS16670	0.32	+0.6
3,794,308	-		DDA3937_RS16670	0.32	-0.9
3,794,407	+		DDA3937_RS16670	0.38	-0.4