Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15995

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,656,093	+		DDA3937_RS15990	0.33	-0.9
3,656,115	-		DDA3937_RS15990	0.38	+0.4
3,656,167	+		DDA3937_RS15990	0.50	-1.3
3,656,168	-		DDA3937_RS15990	0.50	+1.9
3,656,182	+		DDA3937_RS15990	0.53	-1.4
3,656,242	-		DDA3937_RS15990	0.66	+0.3
3,656,251	-		DDA3937_RS15990	0.68	-1.5
3,656,314	+		DDA3937_RS15990	0.82	-0.7
3,656,314	+		DDA3937_RS15990	0.82	-1.5
3,656,314	+		DDA3937_RS15990	0.82	-0.0
3,656,314	+		DDA3937_RS15990	0.82	-0.3
3,656,315	-		DDA3937_RS15990	0.82	+0.4
3,656,317	+		DDA3937_RS15990	0.83	+1.9
3,656,358	+				+0.5
3,656,358	+				-0.3
3,656,359	-				-1.0
3,656,359	-				+0.4
3,656,437	-				-0.1
3,656,437	-				-0.3
3,656,546	+				-0.7
3,656,547	-				-0.0
3,656,547	-				-2.0
3,656,547	-				-2.3
3,656,547	-				-1.1
3,656,677	+		DDA3937_RS22410	0.37	+1.3
3,656,677	+		DDA3937_RS22410	0.37	-0.8
3,656,678	-		DDA3937_RS22410	0.37	+0.1
3,656,678	-		DDA3937_RS22410	0.37	-2.2
3,656,731	+		DDA3937_RS22410	0.53	-0.1
3,656,742	+		DDA3937_RS22410	0.56	-0.6
3,656,743	-		DDA3937_RS22410	0.56	-2.1
3,656,755	+		DDA3937_RS22410	0.60	-2.0
3,656,755	+		DDA3937_RS22410	0.60	-2.8
3,656,756	-		DDA3937_RS22410	0.60	+0.7
3,656,786	+				+1.0
3,656,787	-		DDA3937_RS22410	0.69	-1.0
3,656,787	-		DDA3937_RS22410	0.69	-2.2
3,656,804	-		DDA3937_RS22410	0.74	-3.2
3,656,819	+		DDA3937_RS22410	0.79	-0.8
3,656,819	+		DDA3937_RS22410	0.79	-0.0
3,656,826	+		DDA3937_RS22410	0.81	-0.3
3,656,826	+		DDA3937_RS22410	0.81	-0.3
3,656,827	-		DDA3937_RS22410	0.81	-2.4
3,656,846	-		DDA3937_RS22410	0.87	-2.3
3,656,889	+				-0.3
3,656,889	+				-0.6
3,656,889	+				-1.0
3,656,890	-				-0.2
3,656,890	-				+1.0
3,656,890	-				+0.4
3,656,890	-				-0.8
3,656,890	-				+0.9
3,656,890	-				-3.2
3,656,897	+				-0.0
3,656,897	+				+0.5
3,656,897	+				-1.7
3,656,897	+				-0.2
3,656,897	+				-0.0
3,656,897	+				-2.5
3,656,897	+				-3.1
3,656,897	+				+0.4
3,656,897	+				-1.2
3,656,897	+				-0.6
3,656,897	+				-3.1
3,656,897	+				-2.3
3,656,897	+				+0.4
3,656,897	+				+0.2
3,656,897	+				-1.6
3,656,897	+				+0.7
3,656,897	+				-1.6
3,656,897	+				+0.6
3,656,897	+				+1.0
3,656,897	+				+0.4
3,656,897	+				-0.6
3,656,897	+				+1.6
3,656,897	+				+1.3
3,656,897	+				-0.4
3,656,898	-				-0.3
3,656,898	-				-0.8
3,656,898	-				+0.0
3,656,898	-				-2.3
3,656,898	-				-0.3
3,656,898	-				+1.7
3,656,898	-				-1.5
3,656,898	-				-1.5
3,656,898	-				-0.8
3,656,898	-				-1.2
3,656,898	-				+0.4
3,656,898	-				-1.8
3,656,898	-				-1.5
3,656,898	-				-0.2
3,656,898	-				+1.0
3,656,898	-				-0.6
3,656,898	-				-1.7
3,656,901	+				+0.5
3,656,901	+				-1.7
3,656,901	+				-1.3
3,656,901	+				-0.2
3,656,901	+				+2.0
3,656,901	+				-0.7
3,656,902	-				+0.2
3,656,902	-				+0.3
3,656,902	-				-0.8
3,656,902	-				+1.0
3,656,929	+				+1.3
3,656,929	+				-2.6
3,656,957	+				-1.6
3,656,958	-				-1.7
3,656,975	+				-0.0
3,656,976	-				-0.4
3,656,976	-				-0.8
3,656,976	-				+1.0
3,656,978	+				-1.9
3,656,978	+				+0.7
3,656,979	-				-1.0
3,656,979	-				+0.3
3,656,979	-				-0.9
3,656,992	+				+0.4
3,656,992	+				+2.2
3,656,992	+				+2.0
3,657,025	+				-1.2
3,657,039	+				+1.4
3,657,039	+				-1.2
3,657,039	+				-0.3
3,657,040	-				-0.6
3,657,084	-				+1.1
3,657,084	-				-1.7
3,657,182	+		DDA3937_RS15995	0.15	+0.4
3,657,183	-		DDA3937_RS15995	0.15	-0.5
3,657,202	-		DDA3937_RS15995	0.17	-1.2
3,657,202	-		DDA3937_RS15995	0.17	-2.3
3,657,262	+		DDA3937_RS15995	0.22	-0.6
3,657,263	-		DDA3937_RS15995	0.22	-2.4
3,657,263	-		DDA3937_RS15995	0.22	+1.5
3,657,263	-		DDA3937_RS15995	0.22	-1.7
3,657,358	+		DDA3937_RS15995	0.31	+1.4
3,657,358	+		DDA3937_RS15995	0.31	+1.1
3,657,358	+		DDA3937_RS15995	0.31	+0.4
3,657,359	-		DDA3937_RS15995	0.31	+1.8
3,657,359	-		DDA3937_RS15995	0.31	+0.3
3,657,359	-		DDA3937_RS15995	0.31	+0.8
3,657,359	-		DDA3937_RS15995	0.31	-2.0
3,657,366	-		DDA3937_RS15995	0.32	+0.5
3,657,375	-		DDA3937_RS15995	0.33	-0.8
3,657,384	+		DDA3937_RS15995	0.34	-1.0
3,657,384	+		DDA3937_RS15995	0.34	+0.2
3,657,385	-		DDA3937_RS15995	0.34	+0.1
3,657,388	+		DDA3937_RS15995	0.34	+1.4
3,657,388	+		DDA3937_RS15995	0.34	+1.1
3,657,389	-		DDA3937_RS15995	0.34	+1.0
3,657,407	-		DDA3937_RS15995	0.36	+1.5
3,657,410	-		DDA3937_RS15995	0.36	+1.5
3,657,546	+		DDA3937_RS15995	0.49	-0.6
3,657,546	+		DDA3937_RS15995	0.49	-0.0
3,657,610	-		DDA3937_RS15995	0.55	+1.1
3,657,901	-		DDA3937_RS15995	0.82	-1.3
3,657,901	-		DDA3937_RS15995	0.82	-1.2
3,657,956	+		DDA3937_RS15995	0.88	+1.6
3,657,957	-		DDA3937_RS15995	0.88	-0.6
3,657,957	-		DDA3937_RS15995	0.88	-1.2
3,657,984	+				+0.2
3,657,984	+				-0.8
3,657,984	+				-2.1
3,657,985	-				+3.1
3,658,063	-				+1.0
3,658,068	+				+0.1
3,658,068	+				-0.0
3,658,089	-				-1.0
3,658,093	+				+0.4
3,658,093	+				-1.2
3,658,093	+				-1.5
3,658,093	+				+0.7
3,658,093	+				+1.3
3,658,093	+				-0.8
3,658,094	-				+0.4
3,658,094	-				+1.0
3,658,094	-				+0.2
3,658,094	-				-0.6
3,658,097	+				+0.4
3,658,097	+				-1.5
3,658,098	-				-0.8
3,658,098	-				-0.7
3,658,098	-				-0.2
3,658,098	-				+2.4
3,658,098	-				-0.8
3,658,098	-				-0.5
3,658,098	-				-0.8
3,658,098	-				+1.8
3,658,217	+				-1.2
3,658,217	+				-1.0
3,658,217	+				-1.6
3,658,217	+				-1.1
3,658,217	+				-3.3
3,658,217	+				-0.3
3,658,217	+				-1.2
3,658,217	+				+1.4
3,658,217	+				+0.3
3,658,217	+				+1.5
3,658,217	+				-1.2
3,658,217	+				+1.3
3,658,218	-				-1.3
3,658,218	-				+0.2
3,658,218	-				-0.8
3,658,218	-				-1.0
3,658,218	-				+0.8
3,658,218	-				-2.5
3,658,218	-				+1.0
3,658,218	-				+0.4
3,658,218	-				+1.4
3,658,218	-				-0.0
3,658,218	-				-2.2
3,658,218	-				-0.3
3,658,218	-				+1.1
3,658,218	-				-1.1
3,658,218	-				-0.6
3,658,218	-				+2.6
3,658,218	-				-0.9
3,658,255	+				-0.5
3,658,287	+		DDA3937_RS16000	0.12	+0.2
3,658,325	-		DDA3937_RS16000	0.14	-0.8
3,658,325	-		DDA3937_RS16000	0.14	-2.5
3,658,325	-		DDA3937_RS16000	0.14	-0.8
3,658,338	-		DDA3937_RS16000	0.15	-1.0
3,658,338	-		DDA3937_RS16000	0.15	-0.8
3,658,348	+		DDA3937_RS16000	0.16	+0.2
3,658,348	+		DDA3937_RS16000	0.16	-2.3
3,658,349	-		DDA3937_RS16000	0.16	+0.7
3,658,349	-		DDA3937_RS16000	0.16	-2.5
3,658,365	+		DDA3937_RS16000	0.17	+0.4
3,658,365	+		DDA3937_RS16000	0.17	-2.3
3,658,365	+		DDA3937_RS16000	0.17	-0.0
3,658,366	-		DDA3937_RS16000	0.17	-2.1
3,658,368	-		DDA3937_RS16000	0.17	-0.2
3,658,463	+		DDA3937_RS16000	0.23	-1.0
3,658,569	+		DDA3937_RS16000	0.29	-1.2
3,658,570	-		DDA3937_RS16000	0.29	+0.7
3,658,570	-		DDA3937_RS16000	0.29	+0.4
3,658,573	+		DDA3937_RS16000	0.30	-1.3
3,658,574	-		DDA3937_RS16000	0.30	-1.8
3,658,574	-		DDA3937_RS16000	0.30	-0.0
3,658,624	-		DDA3937_RS16000	0.33	+0.2
3,658,720	-		DDA3937_RS16000	0.39	-0.1
3,658,771	+		DDA3937_RS16000	0.42	+0.4
3,658,972	+		DDA3937_RS16000	0.54	+0.4
3,658,972	+		DDA3937_RS16000	0.54	-1.5
3,658,972	+		DDA3937_RS16000	0.54	-1.5
3,658,988	-		DDA3937_RS16000	0.55	+0.7
3,659,023	+		DDA3937_RS16000	0.58	-0.3
3,659,023	+		DDA3937_RS16000	0.58	+1.1
3,659,024	-		DDA3937_RS16000	0.58	-4.0
3,659,024	-		DDA3937_RS16000	0.58	+0.5
3,659,040	+		DDA3937_RS16000	0.59	-3.9
3,659,047	-		DDA3937_RS16000	0.59	-0.2
3,659,047	-		DDA3937_RS16000	0.59	-0.9
3,659,063	+				-0.0
3,659,074	-		DDA3937_RS16000	0.61	+0.2
3,659,074	-		DDA3937_RS16000	0.61	+0.2