Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15570

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,563,214	-		DDA3937_RS15565	0.13	-2.3
3,563,406	+		DDA3937_RS15565	0.30	-0.8
3,563,406	+		DDA3937_RS15565	0.30	-1.7
3,563,407	-		DDA3937_RS15565	0.30	-0.8
3,563,407	-		DDA3937_RS15565	0.30	-0.3
3,563,608	+		DDA3937_RS15565	0.48	-1.8
3,563,608	+		DDA3937_RS15565	0.48	+1.0
3,563,609	-		DDA3937_RS15565	0.48	+2.8
3,563,609	-		DDA3937_RS15565	0.48	-1.9
3,563,609	-		DDA3937_RS15565	0.48	-0.6
3,563,609	-		DDA3937_RS15565	0.48	-1.0
3,563,609	-		DDA3937_RS15565	0.48	-1.2
3,563,611	-		DDA3937_RS15565	0.48	-1.2
3,563,724	+		DDA3937_RS15565	0.58	-1.3
3,563,850	+		DDA3937_RS15565	0.70	-0.8
3,563,850	+		DDA3937_RS15565	0.70	-1.0
3,563,851	-		DDA3937_RS15565	0.70	-3.6
3,563,854	+		DDA3937_RS15565	0.70	-1.0
3,563,854	+		DDA3937_RS15565	0.70	-1.5
3,563,854	+		DDA3937_RS15565	0.70	-1.7
3,563,854	+				+2.2
3,563,854	+		DDA3937_RS15565	0.70	+0.4
3,563,854	+				-0.3
3,563,854	+		DDA3937_RS15565	0.70	+1.7
3,563,854	+		DDA3937_RS15565	0.70	-1.8
3,563,854	+		DDA3937_RS15565	0.70	-1.6
3,563,854	+		DDA3937_RS15565	0.70	-0.7
3,563,855	-		DDA3937_RS15565	0.70	-1.2
3,563,855	-		DDA3937_RS15565	0.70	-2.1
3,563,855	-				+0.4
3,563,855	-		DDA3937_RS15565	0.70	-2.7
3,563,855	-		DDA3937_RS15565	0.70	-1.3
3,563,855	-		DDA3937_RS15565	0.70	-1.5
3,563,855	-		DDA3937_RS15565	0.70	-1.2
3,563,932	-		DDA3937_RS15565	0.77	-2.7
3,563,992	-		DDA3937_RS15565	0.82	+0.2
3,564,014	+		DDA3937_RS15565	0.84	-3.3
3,564,016	+		DDA3937_RS15565	0.84	-2.3
3,564,017	-		DDA3937_RS15565	0.84	-2.0
3,564,017	-		DDA3937_RS15565	0.84	+1.7
3,564,017	-		DDA3937_RS15565	0.84	-1.0
3,564,017	-		DDA3937_RS15565	0.84	+1.1
3,564,017	-		DDA3937_RS15565	0.84	-0.3
3,564,017	-		DDA3937_RS15565	0.84	-1.2
3,564,017	-		DDA3937_RS15565	0.84	-1.4
3,564,017	-		DDA3937_RS15565	0.84	-0.6
3,564,028	+		DDA3937_RS15565	0.85	-0.0
3,564,028	+		DDA3937_RS15565	0.85	-0.7
3,564,028	+		DDA3937_RS15565	0.85	-2.3
3,564,028	+		DDA3937_RS15565	0.85	+2.4
3,564,028	+		DDA3937_RS15565	0.85	-0.8
3,564,028	+		DDA3937_RS15565	0.85	-0.3
3,564,028	+		DDA3937_RS15565	0.85	-0.0
3,564,028	+		DDA3937_RS15565	0.85	-2.8
3,564,028	+		DDA3937_RS15565	0.85	-2.9
3,564,028	+		DDA3937_RS15565	0.85	-0.5
3,564,028	+		DDA3937_RS15565	0.85	-0.3
3,564,028	+		DDA3937_RS15565	0.85	-1.0
3,564,028	+		DDA3937_RS15565	0.85	+1.3
3,564,029	-		DDA3937_RS15565	0.85	-1.1
3,564,029	-		DDA3937_RS15565	0.85	+0.4
3,564,029	-		DDA3937_RS15565	0.85	+2.7
3,564,029	-		DDA3937_RS15565	0.85	-1.2
3,564,029	-		DDA3937_RS15565	0.85	+0.7
3,564,029	-		DDA3937_RS15565	0.85	-0.3
3,564,040	+		DDA3937_RS15565	0.86	+0.4
3,564,040	+		DDA3937_RS15565	0.86	-0.5
3,564,040	+		DDA3937_RS15565	0.86	+0.1
3,564,041	-		DDA3937_RS15565	0.86	-0.0
3,564,045	+		DDA3937_RS15565	0.87	-1.5
3,564,061	+		DDA3937_RS15565	0.88	-3.5
3,564,061	+		DDA3937_RS15565	0.88	-0.3
3,564,061	+		DDA3937_RS15565	0.88	-0.7
3,564,062	-				+2.7
3,564,062	-		DDA3937_RS15565	0.88	+0.0
3,564,062	-		DDA3937_RS15565	0.88	+0.5
3,564,114	+				+0.7
3,564,115	-				+0.3
3,564,118	+				-1.6
3,564,118	+				-1.3
3,564,118	+				+1.5
3,564,118	+				-1.6
3,564,118	+				-2.3
3,564,118	+				-2.7
3,564,118	+				-0.6
3,564,118	+				+0.4
3,564,118	+				-1.0
3,564,118	+				-0.2
3,564,118	+				-1.7
3,564,118	+				-1.0
3,564,118	+				-0.6
3,564,118	+				-0.8
3,564,118	+				-0.9
3,564,118	+				-0.3
3,564,119	-				-0.6
3,564,119	-				+1.0
3,564,119	-				+0.4
3,564,119	-				-2.1
3,564,119	-				-1.3
3,564,119	-				-0.0
3,564,119	-				-0.5
3,564,124	+				-2.0
3,564,124	+				+2.0
3,564,124	+				-0.8
3,564,124	+				+0.5
3,564,124	+				-1.5
3,564,125	-				+1.0
3,564,125	-				+0.9
3,564,125	-				+1.1
3,564,125	-				-0.5
3,564,125	-				-0.6
3,564,125	-				-1.5
3,564,125	-				-0.0
3,564,125	-				-2.7
3,564,125	-				+2.0
3,564,125	-				-0.1
3,564,126	+				-0.5
3,564,126	+				-0.0
3,564,126	+				-1.7
3,564,126	+				+5.3
3,564,126	+				+0.4
3,564,126	+				-0.8
3,564,126	+				-1.0
3,564,126	+				+0.5
3,564,126	+				-1.5
3,564,126	+				-0.3
3,564,126	+				-2.3
3,564,126	+				-1.3
3,564,126	+				-1.7
3,564,126	+				-3.3
3,564,126	+				-0.3
3,564,127	-				-0.4
3,564,127	-				-1.5
3,564,127	-				-0.9
3,564,127	-				-0.9
3,564,127	-				-2.3
3,564,141	+				-2.3
3,564,142	-				-0.8
3,564,142	-				-1.8
3,564,190	+				-1.5
3,564,190	+				-1.7
3,564,190	+				-2.6
3,564,190	+				+0.5
3,564,191	-				+0.7
3,564,191	-				-0.7
3,564,203	+				-1.5
3,564,204	-				-0.0
3,564,204	-				-1.0
3,564,204	-				-2.4
3,564,204	-				-0.6
3,564,270	+				-1.3
3,564,270	+				-3.0
3,564,270	+				-2.9
3,564,452	-		DDA3937_RS15570	0.24	-0.3
3,564,467	+		DDA3937_RS15570	0.25	-1.0
3,564,467	+		DDA3937_RS15570	0.25	-2.3
3,564,468	-		DDA3937_RS15570	0.25	-1.5
3,564,470	+		DDA3937_RS15570	0.25	-0.8
3,564,471	-		DDA3937_RS15570	0.25	-2.2
3,564,471	-		DDA3937_RS15570	0.25	+0.4
3,564,593	+		DDA3937_RS15570	0.37	-2.8
3,564,707	+		DDA3937_RS15570	0.47	-1.0
3,564,708	-		DDA3937_RS15570	0.47	-0.8
3,564,756	+		DDA3937_RS15570	0.52	+0.4
3,564,798	+		DDA3937_RS15570	0.56	-1.1
3,564,798	+		DDA3937_RS15570	0.56	-3.0
3,564,799	-		DDA3937_RS15570	0.56	-2.5
3,564,878	+		DDA3937_RS15570	0.63	-1.6
3,564,878	+		DDA3937_RS15570	0.63	-2.8
3,564,879	-		DDA3937_RS15570	0.63	-1.0
3,565,114	+		DDA3937_RS15570	0.85	+0.0
3,565,114	+		DDA3937_RS15570	0.85	-1.2
3,565,115	-		DDA3937_RS15570	0.85	-2.8
3,565,274	+				-1.5
3,565,274	+				-0.4
3,565,274	+				-0.5
3,565,274	+				-1.2
3,565,274	+				+2.0
3,565,275	-				-1.7
3,565,275	-				-2.0
3,565,275	-				-0.6
3,565,275	-				-1.0
3,565,275	-				+0.7
3,565,275	-				-1.2
3,565,275	-				-0.0
3,565,275	-				-1.3
3,565,275	-				-1.7
3,565,275	-				-1.3
3,565,275	-				-0.6
3,565,275	-				-3.3
3,565,370	+		DDA3937_RS15575	0.12	-1.7
3,565,476	-		DDA3937_RS15575	0.25	-0.3
3,565,480	+		DDA3937_RS15575	0.26	-0.8
3,565,480	+		DDA3937_RS15575	0.26	-1.9
3,565,481	-		DDA3937_RS15575	0.26	-3.2
3,565,519	+		DDA3937_RS15575	0.31	+0.5
3,565,519	+		DDA3937_RS15575	0.31	+1.4
3,565,519	+		DDA3937_RS15575	0.31	-0.7
3,565,519	+		DDA3937_RS15575	0.31	-0.6
3,565,519	+		DDA3937_RS15575	0.31	-1.6
3,565,519	+		DDA3937_RS15575	0.31	+0.0
3,565,520	-		DDA3937_RS15575	0.31	-0.6
3,565,520	-		DDA3937_RS15575	0.31	-3.3
3,565,521	+		DDA3937_RS15575	0.31	-2.3
3,565,521	+		DDA3937_RS15575	0.31	-0.7
3,565,521	+		DDA3937_RS15575	0.31	-0.2
3,565,521	+		DDA3937_RS15575	0.31	-1.5
3,565,522	-		DDA3937_RS15575	0.31	-2.5
3,565,522	-		DDA3937_RS15575	0.31	-3.7
3,565,522	-		DDA3937_RS15575	0.31	-0.6
3,565,522	-		DDA3937_RS15575	0.31	-1.0
3,565,522	-		DDA3937_RS15575	0.31	-0.6
3,565,522	-		DDA3937_RS15575	0.31	+0.1
3,565,522	-		DDA3937_RS15575	0.31	+1.0
3,565,522	-		DDA3937_RS15575	0.31	-1.3
3,565,522	-		DDA3937_RS15575	0.31	-1.0
3,565,522	-		DDA3937_RS15575	0.31	-1.5
3,565,522	-		DDA3937_RS15575	0.31	-0.8
3,565,522	-		DDA3937_RS15575	0.31	-1.2
3,565,575	-		DDA3937_RS15575	0.38	-1.3
3,565,575	-		DDA3937_RS15575	0.38	-0.0
3,565,631	-		DDA3937_RS15575	0.45	+1.2
3,565,677	+		DDA3937_RS15575	0.51	+0.1
3,565,677	+		DDA3937_RS15575	0.51	-0.6
3,565,677	+		DDA3937_RS15575	0.51	-0.6
3,565,791	+		DDA3937_RS15575	0.65	-0.2
3,565,792	-		DDA3937_RS15575	0.65	-1.3
3,565,792	-		DDA3937_RS15575	0.65	-1.7
3,565,816	+		DDA3937_RS15575	0.68	-2.6
3,565,817	-		DDA3937_RS15575	0.68	-1.7
3,565,841	+		DDA3937_RS15575	0.71	-0.2
3,565,842	-		DDA3937_RS15575	0.72	-2.3
3,565,853	-		DDA3937_RS15575	0.73	-0.3
3,565,853	-		DDA3937_RS15575	0.73	-2.5
3,565,858	+		DDA3937_RS15575	0.74	+0.4
3,565,858	+		DDA3937_RS15575	0.74	-2.0
3,565,858	+		DDA3937_RS15575	0.74	+0.8
3,565,859	-		DDA3937_RS15575	0.74	-1.6
3,565,859	-		DDA3937_RS15575	0.74	-2.7
3,565,980	+		DDA3937_RS15575	0.89	-2.4
3,565,980	+		DDA3937_RS15575	0.89	+1.1
3,565,980	+		DDA3937_RS15575	0.89	+0.8
3,565,981	-		DDA3937_RS15575	0.89	-1.4
3,565,981	-		DDA3937_RS15575	0.89	-2.1
3,566,065	-				-0.1
3,566,089	+				+0.6
3,566,130	+				-0.6
3,566,159	-				+0.8