Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15320

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,516,466	-		DDA3937_RS15315	0.17	+0.1
3,516,466	-		DDA3937_RS15315	0.17	-0.8
3,516,466	-		DDA3937_RS15315	0.17	+0.3
3,516,554	-		DDA3937_RS15315	0.25	+1.0
3,516,554	-		DDA3937_RS15315	0.25	-0.3
3,516,554	-		DDA3937_RS15315	0.25	+0.3
3,516,554	-		DDA3937_RS15315	0.25	-0.2
3,516,564	+		DDA3937_RS15315	0.26	-2.2
3,516,723	+		DDA3937_RS15315	0.41	+0.3
3,516,723	+		DDA3937_RS15315	0.41	-1.7
3,516,724	-		DDA3937_RS15315	0.41	-0.2
3,516,757	+		DDA3937_RS15315	0.44	-0.6
3,516,757	+		DDA3937_RS15315	0.44	-0.7
3,516,841	-		DDA3937_RS15315	0.52	-0.6
3,516,933	+		DDA3937_RS15315	0.60	+2.0
3,516,933	+		DDA3937_RS15315	0.60	-0.5
3,516,934	-		DDA3937_RS15315	0.60	+0.0
3,516,934	-		DDA3937_RS15315	0.60	-1.6
3,516,947	+		DDA3937_RS15315	0.62	+0.5
3,516,948	-		DDA3937_RS15315	0.62	+0.4
3,516,969	+				+0.4
3,516,969	+		DDA3937_RS15315	0.64	-1.9
3,516,970	-		DDA3937_RS15315	0.64	-0.9
3,516,970	-		DDA3937_RS15315	0.64	+0.3
3,516,970	-		DDA3937_RS15315	0.64	+0.2
3,516,986	+		DDA3937_RS15315	0.65	-0.3
3,516,991	-		DDA3937_RS15315	0.66	-0.3
3,517,158	+		DDA3937_RS15315	0.81	-2.0
3,517,159	-		DDA3937_RS15315	0.81	-1.2
3,517,159	-		DDA3937_RS15315	0.81	-0.7
3,517,159	-		DDA3937_RS15315	0.81	-0.6
3,517,411	+				+0.1
3,517,491	+		DDA3937_RS15320	0.12	-0.5
3,517,492	-		DDA3937_RS15320	0.12	+0.1
3,517,492	-		DDA3937_RS15320	0.12	-1.7
3,517,492	-		DDA3937_RS15320	0.12	-1.7
3,517,492	-		DDA3937_RS15320	0.12	+1.0
3,517,492	-		DDA3937_RS15320	0.12	-1.3
3,517,508	+		DDA3937_RS15320	0.13	+3.2
3,517,508	+		DDA3937_RS15320	0.13	+0.1
3,517,574	+		DDA3937_RS15320	0.19	+1.0
3,517,574	+		DDA3937_RS15320	0.19	-1.4
3,517,574	+		DDA3937_RS15320	0.19	+0.7
3,517,838	+		DDA3937_RS15320	0.42	-1.8
3,517,838	+		DDA3937_RS15320	0.42	+0.1
3,517,839	-		DDA3937_RS15320	0.42	-0.3
3,517,839	-		DDA3937_RS15320	0.42	+3.7
3,517,840	+		DDA3937_RS15320	0.42	+0.0
3,517,840	+		DDA3937_RS15320	0.42	-1.6
3,517,841	-		DDA3937_RS15320	0.42	-0.3
3,517,841	-		DDA3937_RS15320	0.42	-1.1
3,517,917	+		DDA3937_RS15320	0.49	-1.9
3,518,039	+		DDA3937_RS15320	0.59	-2.9
3,518,131	-		DDA3937_RS15320	0.67	+0.7
3,518,250	+		DDA3937_RS15320	0.78	-1.4
3,518,250	+		DDA3937_RS15320	0.78	-0.6
3,518,250	+		DDA3937_RS15320	0.78	-2.1
3,518,250	+		DDA3937_RS15320	0.78	+1.0
3,518,250	+		DDA3937_RS15320	0.78	-0.0
3,518,250	+		DDA3937_RS15320	0.78	-0.4
3,518,251	-		DDA3937_RS15320	0.78	-1.7
3,518,251	-		DDA3937_RS15320	0.78	-1.0
3,518,317	+		DDA3937_RS15320	0.84	-1.7
3,518,363	+		DDA3937_RS15320	0.88	+0.4
3,518,363	+		DDA3937_RS15320	0.88	+0.8
3,518,364	-		DDA3937_RS15320	0.88	+1.0
3,518,365	+		DDA3937_RS15320	0.88	+1.7
3,518,366	-		DDA3937_RS15320	0.88	-1.0
3,518,366	-		DDA3937_RS15320	0.88	-1.0
3,518,366	-		DDA3937_RS15320	0.88	+1.3
3,518,369	+		DDA3937_RS15320	0.88	-0.5
3,518,369	+		DDA3937_RS15320	0.88	-1.0
3,518,369	+		DDA3937_RS15320	0.88	-2.3
3,518,369	+		DDA3937_RS15320	0.88	+1.4
3,518,369	+		DDA3937_RS15320	0.88	-3.6
3,518,369	+		DDA3937_RS15320	0.88	+0.0
3,518,369	+		DDA3937_RS15320	0.88	-1.9
3,518,369	+		DDA3937_RS15320	0.88	-1.0
3,518,369	+		DDA3937_RS15320	0.88	-0.7
3,518,369	+		DDA3937_RS15320	0.88	+1.9
3,518,369	+		DDA3937_RS15320	0.88	+0.0
3,518,369	+		DDA3937_RS15320	0.88	-2.1
3,518,370	-		DDA3937_RS15320	0.88	+1.4
3,518,370	-		DDA3937_RS15320	0.88	+0.0
3,518,370	-		DDA3937_RS15320	0.88	-1.7
3,518,370	-		DDA3937_RS15320	0.88	-2.6
3,518,370	-		DDA3937_RS15320	0.88	-2.2
3,518,370	-		DDA3937_RS15320	0.88	-3.4
3,518,370	-		DDA3937_RS15320	0.88	-1.7
3,518,370	-		DDA3937_RS15320	0.88	-0.6
3,518,370	-		DDA3937_RS15320	0.88	+0.7
3,518,370	-		DDA3937_RS15320	0.88	-1.4
3,518,370	-		DDA3937_RS15320	0.88	+0.4
3,518,370	-		DDA3937_RS15320	0.88	-0.3
3,518,370	-		DDA3937_RS15320	0.88	+2.5
3,518,370	-		DDA3937_RS15320	0.88	+0.2
3,518,370	-		DDA3937_RS15320	0.88	+0.7
3,518,370	-		DDA3937_RS15320	0.88	-3.3
3,518,370	-		DDA3937_RS15320	0.88	+0.8
3,518,370	-		DDA3937_RS15320	0.88	-1.3
3,518,370	-		DDA3937_RS15320	0.88	-1.0
3,518,371	+		DDA3937_RS15320	0.88	+0.6
3,518,371	+		DDA3937_RS15320	0.88	-1.5
3,518,440	+				-0.5
3,518,440	+				+0.8
3,518,441	-				+0.3
3,518,441	-				+2.0
3,518,441	-				-0.8
3,518,441	-				-0.1
3,518,504	+				-1.7
3,518,609	+				-0.5
3,518,609	+				-2.1
3,518,610	-				-0.6
3,518,610	-				-1.3
3,518,713	+		DDA3937_RS15325	0.10	+0.4
3,518,713	+		DDA3937_RS15325	0.10	-1.3
3,518,714	-		DDA3937_RS15325	0.11	+0.4
3,518,739	+		DDA3937_RS15325	0.13	-2.4
3,518,739	+		DDA3937_RS15325	0.13	-0.0
3,518,786	+		DDA3937_RS15325	0.18	+0.6
3,518,786	+		DDA3937_RS15325	0.18	-2.9
3,518,839	+		DDA3937_RS15325	0.23	+1.7
3,518,840	-		DDA3937_RS15325	0.23	+3.3
3,518,840	-		DDA3937_RS15325	0.23	+2.6
3,518,891	+		DDA3937_RS15325	0.29	+0.4
3,518,892	-		DDA3937_RS15325	0.29	-0.8
3,518,892	-		DDA3937_RS15325	0.29	-1.0
3,518,963	-		DDA3937_RS15325	0.36	-1.2
3,518,966	+		DDA3937_RS15325	0.36	-0.3
3,518,966	+		DDA3937_RS15325	0.36	-0.3
3,518,966	+		DDA3937_RS15325	0.36	-0.6
3,518,966	+		DDA3937_RS15325	0.36	-2.2
3,518,966	+		DDA3937_RS15325	0.36	-0.3
3,518,966	+		DDA3937_RS15325	0.36	+0.0
3,518,966	+		DDA3937_RS15325	0.36	+0.8
3,518,966	+		DDA3937_RS15325	0.36	+1.0
3,518,966	+		DDA3937_RS15325	0.36	+0.2
3,518,966	+		DDA3937_RS15325	0.36	+0.4
3,518,967	-		DDA3937_RS15325	0.36	+0.5
3,518,967	-		DDA3937_RS15325	0.36	-0.8
3,518,967	-		DDA3937_RS15325	0.36	-1.9
3,518,967	-		DDA3937_RS15325	0.36	-1.1
3,519,010	+		DDA3937_RS15325	0.41	-1.6
3,519,043	-		DDA3937_RS15325	0.44	-0.2
3,519,166	-		DDA3937_RS15325	0.57	-2.3
3,519,166	-		DDA3937_RS15325	0.57	-1.2
3,519,166	-		DDA3937_RS15325	0.57	-0.7
3,519,167	+		DDA3937_RS15325	0.57	+2.0
3,519,171	+		DDA3937_RS15325	0.57	-0.3
3,519,228	+		DDA3937_RS15325	0.63	-2.6
3,519,239	+		DDA3937_RS15325	0.64	-0.6
3,519,239	+		DDA3937_RS15325	0.64	-2.5
3,519,243	+		DDA3937_RS15325	0.65	-1.5
3,519,244	-		DDA3937_RS15325	0.65	+0.4
3,519,244	-		DDA3937_RS15325	0.65	-1.3
3,519,297	-		DDA3937_RS15325	0.70	-0.3
3,519,297	-		DDA3937_RS15325	0.70	-0.6
3,519,297	-		DDA3937_RS15325	0.70	-1.5
3,519,307	+		DDA3937_RS15325	0.71	-1.5
3,519,322	+		DDA3937_RS15325	0.73	-2.5
3,519,399	-		DDA3937_RS15325	0.80	-2.0
3,519,399	-		DDA3937_RS15325	0.80	-1.2
3,519,399	-		DDA3937_RS15325	0.80	-1.3
3,519,430	+		DDA3937_RS15325	0.84	-0.6
3,519,430	+		DDA3937_RS15325	0.84	-1.7
3,519,431	-		DDA3937_RS15325	0.84	+0.7
3,519,435	+		DDA3937_RS15325	0.84	+0.4
3,519,435	+		DDA3937_RS15325	0.84	-2.2
3,519,435	+		DDA3937_RS15325	0.84	-0.0
3,519,435	+		DDA3937_RS15325	0.84	-0.8
3,519,436	-		DDA3937_RS15325	0.84	-1.6
3,519,436	-		DDA3937_RS15325	0.84	-0.3
3,519,436	-		DDA3937_RS15325	0.84	+1.7
3,519,436	-		DDA3937_RS15325	0.84	-2.9
3,519,436	-		DDA3937_RS15325	0.84	-0.2
3,519,438	-		DDA3937_RS15325	0.84	-0.3
3,519,438	-		DDA3937_RS15325	0.84	-2.7
3,519,438	-		DDA3937_RS15325	0.84	-2.2
3,519,440	+		DDA3937_RS15325	0.85	-2.5
3,519,454	+		DDA3937_RS15325	0.86	-0.5
3,519,454	+		DDA3937_RS15325	0.86	-1.0