Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15165

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,480,628	+				+0.9
3,480,628	+				+0.1
3,480,754	+				-3.1
3,480,809	+				+0.0
3,480,809	+				+1.8
3,480,810	-				-0.7
3,480,815	+				-0.2
3,480,826	+				-2.7
3,480,827	-				-0.4
3,480,870	-				-0.9
3,480,885	-				-2.4
3,480,891	-				-0.5
3,480,891	-				-2.2
3,480,894	-				-1.0
3,481,011	+				-0.8
3,481,011	+				+0.5
3,481,012	-				-1.2
3,481,012	-				-0.6
3,481,049	+				-0.6
3,481,050	-				-2.9
3,481,050	-				+0.9
3,481,050	-				-2.5
3,481,050	-				+0.5
3,481,052	+				-0.1
3,481,063	-				-0.9
3,481,063	-				-0.4
3,481,093	-				+0.7
3,481,138	+				-2.5
3,481,158	-				-1.7
3,481,172	+				-0.3
3,481,172	+				+0.3
3,481,172	+				-0.5
3,481,172	+				+1.9
3,481,172	+				-0.6
3,481,173	-				+2.0
3,481,173	-				-1.7
3,481,173	-				-2.1
3,481,173	-				-0.6
3,481,210	-		DDA3937_RS15160	0.12	-1.0
3,481,210	-		DDA3937_RS15160	0.12	-1.2
3,481,210	-		DDA3937_RS15160	0.12	+0.0
3,481,210	-		DDA3937_RS15160	0.12	-0.8
3,481,289	+		DDA3937_RS15160	0.42	-0.6
3,481,290	-		DDA3937_RS15160	0.42	+0.9
3,481,359	+		DDA3937_RS15160	0.68	+1.1
3,481,359	+		DDA3937_RS15160	0.68	+1.0
3,481,360	-		DDA3937_RS15160	0.68	-0.4
3,481,360	-		DDA3937_RS15160	0.68	-3.3
3,481,382	-		DDA3937_RS15160	0.76	-0.6
3,481,382	-		DDA3937_RS15160	0.76	-0.3
3,481,406	+		DDA3937_RS15160	0.85	-0.3
3,481,407	-		DDA3937_RS15160	0.86	-2.0
3,481,408	+		DDA3937_RS15160	0.86	+1.0
3,481,437	+				-1.2
3,481,437	+				-1.9
3,481,437	+				-0.6
3,481,438	-				-2.7
3,481,560	+		DDA3937_RS15165	0.16	+0.4
3,481,560	+		DDA3937_RS15165	0.16	-1.3
3,481,560	+		DDA3937_RS15165	0.16	-0.8
3,481,560	+		DDA3937_RS15165	0.16	-0.6
3,481,560	+		DDA3937_RS15165	0.16	-1.8
3,481,561	-		DDA3937_RS15165	0.16	-0.3
3,481,561	-		DDA3937_RS15165	0.16	+0.7
3,481,561	-		DDA3937_RS15165	0.16	-0.0
3,481,708	+		DDA3937_RS15165	0.50	+1.4
3,481,708	+		DDA3937_RS15165	0.50	+0.4
3,481,709	-		DDA3937_RS15165	0.50	-0.8
3,481,709	-		DDA3937_RS15165	0.50	+4.0
3,481,709	-		DDA3937_RS15165	0.50	-2.2
3,481,909	+				+0.6
3,481,909	+				-0.3
3,481,910	-				-0.8
3,481,910	-				-1.7
3,481,915	+				+1.0
3,481,915	+				-0.3
3,481,915	+				-1.5
3,481,915	+				-0.6
3,481,916	-				-0.4
3,481,916	-				+0.2
3,481,916	-				-1.2
3,481,916	-				-0.6
3,481,917	+				-2.6
3,481,917	+				+0.2
3,481,917	+				-1.2
3,481,917	+				-0.6
3,481,917	+				+0.7
3,481,917	+				-0.2
3,481,917	+				-1.7
3,481,917	+				+0.7
3,481,917	+				-1.3
3,481,917	+				-1.0
3,481,918	-				+1.6
3,481,918	-				-0.4
3,481,918	-				-0.6
3,481,918	-				-0.6
3,481,918	-				-0.6
3,481,918	-				-0.3
3,481,918	-				+1.0
3,481,918	-				+0.4
3,481,918	-				+0.0
3,481,918	-				-2.5
3,481,918	-				-1.7
3,481,918	-				+1.8
3,481,918	-				-1.8
3,481,918	-				-1.0
3,481,951	-				+0.3
3,481,961	+				+1.0
3,481,961	+				-0.9
3,481,962	-				+1.0
3,481,962	-				-0.3
3,481,998	+				+0.4
3,481,998	+				-1.4
3,481,998	+				-1.4
3,481,998	+				+2.0
3,481,999	-				+1.8
3,482,040	+				-0.8
3,482,216	+		DDA3937_RS15170	0.23	+1.0
3,482,216	+		DDA3937_RS15170	0.23	+0.0
3,482,217	-		DDA3937_RS15170	0.23	-0.2
3,482,438	+		DDA3937_RS15170	0.84	-1.9
3,482,438	+		DDA3937_RS15170	0.84	-1.6
3,482,438	+		DDA3937_RS15170	0.84	+1.8
3,482,438	+		DDA3937_RS15170	0.84	+0.4
3,482,438	+		DDA3937_RS15170	0.84	+0.3
3,482,439	-		DDA3937_RS15170	0.85	+0.2
3,482,439	-		DDA3937_RS15170	0.85	-1.7
3,482,439	-		DDA3937_RS15170	0.85	-0.8
3,482,439	-		DDA3937_RS15170	0.85	+0.0
3,482,439	-		DDA3937_RS15170	0.85	+1.0
3,482,439	-				+2.0
3,482,439	-		DDA3937_RS15170	0.85	+0.7
3,482,439	-		DDA3937_RS15170	0.85	+1.0
3,482,439	-		DDA3937_RS15170	0.85	+0.9
3,482,511	+				-0.8
3,482,511	+				+0.8
3,482,511	+				-0.6
3,482,511	+				+0.4
3,482,511	+				+1.1
3,482,511	+				+1.3
3,482,511	+				-0.7
3,482,511	+				+1.4
3,482,511	+				+0.6
3,482,511	+				+0.0
3,482,511	+				+2.0
3,482,511	+				-1.6
3,482,511	+				-0.6
3,482,511	+				-2.0
3,482,511	+				-0.8
3,482,512	-				+2.0
3,482,512	-				+0.9
3,482,512	-				-0.9
3,482,512	-				+3.4
3,482,512	-				+1.6
3,482,512	-				-0.2
3,482,512	-				+1.6
3,482,512	-				-2.0
3,482,512	-				+0.5
3,482,512	-				+0.2
3,482,515	+				+1.0
3,482,515	+				-0.3
3,482,515	+				-1.8
3,482,516	-				-2.0
3,482,516	-				-1.3
3,482,516	-				-1.5
3,482,516	-				+0.6
3,482,516	-				-0.7
3,482,516	-				+0.0
3,482,516	-				-0.3
3,482,516	-				-0.6
3,482,547	-				-2.2
3,482,573	+		DDA3937_RS15175	0.11	-1.6
3,482,573	+		DDA3937_RS15175	0.11	-1.2
3,482,609	+		DDA3937_RS15175	0.18	+0.0
3,482,609	+		DDA3937_RS15175	0.18	+0.2
3,482,610	-		DDA3937_RS15175	0.18	-0.2
3,482,661	-		DDA3937_RS15175	0.27	-0.1
3,482,731	+		DDA3937_RS15175	0.41	-0.3
3,482,732	-		DDA3937_RS15175	0.41	-0.7
3,482,751	+		DDA3937_RS15175	0.45	-1.2
3,482,751	+				-0.8
3,482,751	+		DDA3937_RS15175	0.45	-2.1
3,482,751	+		DDA3937_RS15175	0.45	-0.8
3,482,752	-		DDA3937_RS15175	0.45	-1.3
3,482,752	-		DDA3937_RS15175	0.45	-2.6
3,482,752	-		DDA3937_RS15175	0.45	+0.0
3,482,807	-		DDA3937_RS15175	0.55	+0.4
3,482,857	+		DDA3937_RS15175	0.65	-0.6
3,482,858	-		DDA3937_RS15175	0.65	+0.2