Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14800

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,395,177	+		DDA3937_RS14795	0.34	+0.3
3,395,245	+		DDA3937_RS14795	0.39	+0.9
3,395,246	-		DDA3937_RS14795	0.39	-1.9
3,395,246	-		DDA3937_RS14795	0.39	-3.4
3,395,283	+		DDA3937_RS14795	0.41	-0.1
3,395,291	-		DDA3937_RS14795	0.42	-0.1
3,395,311	+		DDA3937_RS14795	0.43	-2.3
3,395,312	-		DDA3937_RS14795	0.43	-2.6
3,395,349	+		DDA3937_RS14795	0.46	+1.0
3,395,349	+		DDA3937_RS14795	0.46	-1.2
3,395,350	-		DDA3937_RS14795	0.46	-0.4
3,395,360	-		DDA3937_RS14795	0.46	-0.5
3,395,418	-		DDA3937_RS14795	0.50	-2.6
3,395,520	+		DDA3937_RS14795	0.57	-1.7
3,395,521	-		DDA3937_RS14795	0.57	+0.0
3,395,623	+		DDA3937_RS14795	0.64	-1.2
3,396,035	-				-0.4
3,396,042	-				-1.2
3,396,177	+				+0.4
3,396,179	+				-3.3
3,396,179	+				+1.0
3,396,180	-				+0.4
3,396,180	-				+0.5
3,396,218	+				-1.2
3,396,218	+				-1.2
3,396,218	+				-1.5
3,396,218	+				+2.4
3,396,252	+				-1.6
3,396,253	-				+2.0
3,396,311	+				+1.3
3,396,311	+				+0.1
3,396,312	-				-0.5
3,396,355	-				+2.0
3,396,465	+		DDA3937_RS14800	0.14	-2.9
3,396,499	+		DDA3937_RS14800	0.16	-1.2
3,396,500	-		DDA3937_RS14800	0.16	-1.2
3,396,500	-		DDA3937_RS14800	0.16	+0.8
3,396,502	+		DDA3937_RS14800	0.16	-1.0
3,396,502	+		DDA3937_RS14800	0.16	+0.3
3,396,503	-		DDA3937_RS14800	0.16	+1.1
3,396,503	-		DDA3937_RS14800	0.16	-0.5
3,396,582	+		DDA3937_RS14800	0.20	-1.3
3,396,583	-		DDA3937_RS14800	0.20	-0.9
3,396,588	+		DDA3937_RS14800	0.20	-3.0
3,396,588	+		DDA3937_RS14800	0.20	-0.1
3,396,588	+		DDA3937_RS14800	0.20	-2.4
3,396,588	+		DDA3937_RS14800	0.20	+0.1
3,396,588	+		DDA3937_RS14800	0.20	-1.0
3,396,589	-		DDA3937_RS14800	0.20	-1.4
3,396,589	-		DDA3937_RS14800	0.20	+2.0
3,396,589	-		DDA3937_RS14800	0.20	-2.1
3,396,664	+		DDA3937_RS14800	0.24	-0.4
3,396,691	-		DDA3937_RS14800	0.25	-0.0
3,396,691	-		DDA3937_RS14800	0.25	-0.8
3,396,691	-		DDA3937_RS14800	0.25	+0.0
3,396,691	-		DDA3937_RS14800	0.25	-0.6
3,396,705	+		DDA3937_RS14800	0.26	-0.9
3,396,705	+		DDA3937_RS14800	0.26	+0.8
3,396,705	+		DDA3937_RS14800	0.26	-0.4
3,396,705	+		DDA3937_RS14800	0.26	-1.9
3,396,705	+		DDA3937_RS14800	0.26	-0.0
3,396,706	-		DDA3937_RS14800	0.26	+3.0
3,396,706	-		DDA3937_RS14800	0.26	-0.2
3,396,706	-		DDA3937_RS14800	0.26	-0.8
3,396,706	-		DDA3937_RS14800	0.26	+0.4
3,396,706	-		DDA3937_RS14800	0.26	-3.2
3,396,706	-		DDA3937_RS14800	0.26	+0.8
3,396,709	+		DDA3937_RS14800	0.26	-0.3
3,396,709	+		DDA3937_RS14800	0.26	-0.3
3,396,709	+		DDA3937_RS14800	0.26	-1.0
3,396,709	+		DDA3937_RS14800	0.26	+1.0
3,396,709	+		DDA3937_RS14800	0.26	-1.0
3,396,709	+		DDA3937_RS14800	0.26	-1.0
3,396,709	+		DDA3937_RS14800	0.26	-2.0
3,396,709	+		DDA3937_RS14800	0.26	-0.9
3,396,709	+		DDA3937_RS14800	0.26	-0.2
3,396,710	-		DDA3937_RS14800	0.26	+1.4
3,396,710	-		DDA3937_RS14800	0.26	-3.5
3,396,710	-		DDA3937_RS14800	0.26	-1.0
3,396,710	-		DDA3937_RS14800	0.26	-1.9
3,396,710	-		DDA3937_RS14800	0.26	-0.2
3,396,710	-		DDA3937_RS14800	0.26	-1.5
3,396,710	-		DDA3937_RS14800	0.26	+0.8
3,396,710	-		DDA3937_RS14800	0.26	+1.4
3,396,920	+		DDA3937_RS14800	0.36	-2.0
3,396,920	+		DDA3937_RS14800	0.36	-0.4
3,396,921	-		DDA3937_RS14800	0.36	+0.4
3,396,921	-		DDA3937_RS14800	0.36	-0.9
3,396,921	-		DDA3937_RS14800	0.36	-2.1
3,396,921	-		DDA3937_RS14800	0.36	-1.2
3,396,921	-		DDA3937_RS14800	0.36	-3.0
3,397,228	-		DDA3937_RS14800	0.50	+0.1
3,397,228	-		DDA3937_RS14800	0.50	-2.7
3,397,357	-		DDA3937_RS14800	0.56	-1.8
3,397,467	-		DDA3937_RS14800	0.61	-0.8
3,397,467	-		DDA3937_RS14800	0.61	+0.2
3,397,467	-		DDA3937_RS14800	0.61	-1.5
3,397,475	+		DDA3937_RS14800	0.62	-3.2
3,397,475	+		DDA3937_RS14800	0.62	-0.3
3,397,475	+		DDA3937_RS14800	0.62	+0.4
3,397,475	+		DDA3937_RS14800	0.62	+1.5
3,397,476	-		DDA3937_RS14800	0.62	-0.9
3,397,476	-		DDA3937_RS14800	0.62	-0.6
3,397,476	-		DDA3937_RS14800	0.62	-1.7
3,397,476	-		DDA3937_RS14800	0.62	-0.6
3,397,476	-		DDA3937_RS14800	0.62	+0.7
3,397,476	-		DDA3937_RS14800	0.62	+1.0
3,397,479	+		DDA3937_RS14800	0.62	+0.3
3,397,479	+		DDA3937_RS14800	0.62	-0.9
3,397,479	+		DDA3937_RS14800	0.62	-1.0
3,397,691	+		DDA3937_RS14800	0.72	-1.9
3,397,691	+		DDA3937_RS14800	0.72	-1.2
3,397,691	+		DDA3937_RS14800	0.72	-1.3
3,397,691	+		DDA3937_RS14800	0.72	-1.2
3,397,692	-		DDA3937_RS14800	0.72	-1.9
3,397,692	-		DDA3937_RS14800	0.72	-2.9
3,397,692	-		DDA3937_RS14800	0.72	-1.0
3,397,811	+		DDA3937_RS14800	0.77	-1.9
3,397,812	-		DDA3937_RS14800	0.77	-0.4
3,397,812	-		DDA3937_RS14800	0.77	-2.9
3,397,812	-		DDA3937_RS14800	0.77	-0.9
3,397,887	+		DDA3937_RS14800	0.81	-0.4
3,397,888	-		DDA3937_RS14800	0.81	-0.2
3,397,898	-		DDA3937_RS14800	0.81	+0.5
3,397,898	-		DDA3937_RS14800	0.81	-0.7
3,397,969	-		DDA3937_RS14800	0.85	+1.7
3,397,969	-		DDA3937_RS14800	0.85	+0.6
3,397,969	-		DDA3937_RS14800	0.85	+0.9
3,397,969	-		DDA3937_RS14800	0.85	-2.3
3,397,969	-		DDA3937_RS14800	0.85	+0.6
3,398,030	+		DDA3937_RS14800	0.88	-1.0
3,398,030	+		DDA3937_RS14800	0.88	-0.4
3,398,031	-		DDA3937_RS14800	0.88	-0.1
3,398,060	+		DDA3937_RS14800	0.89	-2.5
3,398,060	+		DDA3937_RS14800	0.89	+1.3
3,398,063	+		DDA3937_RS14800	0.89	-1.1
3,398,063	+		DDA3937_RS14800	0.89	+1.5
3,398,063	+		DDA3937_RS14800	0.89	-3.3
3,398,063	+		DDA3937_RS14800	0.89	+1.7
3,398,063	+		DDA3937_RS14800	0.89	-1.8
3,398,063	+		DDA3937_RS14800	0.89	+0.4
3,398,063	+		DDA3937_RS14800	0.89	-0.6
3,398,064	-		DDA3937_RS14800	0.89	+1.2
3,398,064	-		DDA3937_RS14800	0.89	+1.2
3,398,064	-		DDA3937_RS14800	0.89	-1.1
3,398,064	-		DDA3937_RS14800	0.89	-0.1
3,398,088	-				-1.8
3,398,128	-				-1.9
3,398,128	-				-2.4
3,398,160	+				-0.7
3,398,161	-				-0.1
3,398,161	-				+1.4
3,398,161	-				+1.5
3,398,161	-				-0.4
3,398,161	-				-0.2
3,398,161	-				+2.1
3,398,181	-				+0.4
3,398,248	+				+0.5
3,398,295	+				+0.9
3,398,317	+				-1.6
3,398,319	+				-2.1
3,398,319	+				-1.1
3,398,319	+				-0.6
3,398,319	+				-1.0
3,398,319	+				+1.4
3,398,319	+				-0.4
3,398,319	+				+2.2
3,398,320	-				-0.9
3,398,320	-				+1.7
3,398,320	-				-0.6
3,398,320	-				-2.2
3,398,320	-				-0.9
3,398,320	-				+0.4
3,398,320	-				+0.1
3,398,320	-				-0.5
3,398,320	-				-0.3
3,398,320	-				+0.6
3,398,323	+				+0.6
3,398,323	+				-0.1
3,398,365	+				+0.6
3,398,553	+		DDA3937_RS14805	0.32	-0.9
3,398,553	+		DDA3937_RS14805	0.32	-0.6
3,398,553	+		DDA3937_RS14805	0.32	-1.2
3,398,553	+		DDA3937_RS14805	0.32	-1.5
3,398,553	+		DDA3937_RS14805	0.32	-0.9
3,398,554	-		DDA3937_RS14805	0.32	+1.6
3,398,643	+		DDA3937_RS14805	0.43	+0.4
3,398,643	+		DDA3937_RS14805	0.43	-0.6
3,398,643	+		DDA3937_RS14805	0.43	-0.6
3,398,643	+		DDA3937_RS14805	0.43	-0.6
3,398,644	-		DDA3937_RS14805	0.43	-0.0
3,398,644	-		DDA3937_RS14805	0.43	-0.7
3,398,644	-		DDA3937_RS14805	0.43	-0.9
3,398,662	-		DDA3937_RS14805	0.45	+0.9
3,398,719	+		DDA3937_RS14805	0.52	-0.7
3,398,722	-		DDA3937_RS14805	0.52	-2.7
3,398,786	-		DDA3937_RS14805	0.60	-1.4
3,398,786	-		DDA3937_RS14805	0.60	-1.6
3,398,839	+		DDA3937_RS14805	0.67	+0.9
3,398,840	-		DDA3937_RS14805	0.67	-1.1
3,398,917	+		DDA3937_RS14805	0.76	-0.6
3,398,970	-		DDA3937_RS14805	0.83	-1.9
3,398,970	-		DDA3937_RS14805	0.83	-1.7
3,399,055	-				-2.1
3,399,106	+				-1.4
3,399,106	+				-1.1
3,399,106	+				-0.5
3,399,107	-				-3.4
3,399,107	-				+1.1
3,399,129	+				+0.9
3,399,129	+				-3.6
3,399,129	+				+0.9
3,399,129	+				-0.9
3,399,129	+				-3.0
3,399,129	+				+0.4
3,399,130	-				+0.4
3,399,130	-				-1.8
3,399,130	-				+0.8
3,399,130	-				+0.4
3,399,130	-				-2.1
3,399,130	-				-1.5
3,399,130	-				-0.6
3,399,130	-				-1.5
3,399,130	-				-1.0
3,399,130	-				-0.2
3,399,172	+				-1.1
3,399,173	-				+1.9
3,399,181	+				-0.9
3,399,181	+				-1.8
3,399,181	+				-1.1
3,399,181	+				+0.3
3,399,182	-				-0.5
3,399,182	-				-1.3
3,399,182	-				-0.1
3,399,182	-				+0.9
3,399,183	+				-1.5
3,399,183	+				+1.3
3,399,183	+				-2.2
3,399,183	+				+0.5
3,399,183	+				-1.8
3,399,183	+				-0.4
3,399,183	+				+0.1
3,399,184	-				-1.2
3,399,184	-				-1.2
3,399,184	-				-1.9
3,399,184	-				-2.0
3,399,184	-				-2.0
3,399,184	-				-1.7
3,399,184	-				+1.1
3,399,184	-				+1.9
3,399,184	-				+0.8
3,399,184	-				-0.4
3,399,184	-				+0.7
3,399,184	-				-0.1
3,399,184	-				-0.8
3,399,247	-				+0.2
3,399,286	+				-1.8
3,399,286	+				-1.6
3,399,287	-				+0.1
3,399,287	-				+3.4
3,399,287	-				-2.0