Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13920

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,164,550	-				+1.5
3,164,550	-				-0.2
3,164,577	-				+0.5
3,164,577	-				-1.8
3,164,577	-				-2.2
3,164,610	+				-0.6
3,164,611	-				-2.4
3,164,614	+				+0.3
3,164,614	+				+0.9
3,164,614	+				-2.8
3,164,615	-				-1.6
3,164,615	-				-0.5
3,164,615	-				-1.0
3,164,628	+				-1.5
3,164,628	+				-1.0
3,164,628	+				-1.1
3,164,628	+				+0.9
3,164,629	-				+0.5
3,164,629	-				+0.4
3,164,629	-				-0.4
3,164,629	-				-0.5
3,164,729	+		DDA3937_RS13910	0.17	-1.3
3,164,729	+		DDA3937_RS13910	0.17	-0.7
3,164,730	-		DDA3937_RS13910	0.17	+0.3
3,164,730	-				-0.5
3,164,738	-		DDA3937_RS13910	0.19	-1.6
3,164,794	+		DDA3937_RS13910	0.29	+0.3
3,164,794	+		DDA3937_RS13910	0.29	-1.3
3,164,843	+		DDA3937_RS13910	0.38	+0.6
3,164,843	+				-0.1
3,164,843	+				+2.9
3,164,844	-		DDA3937_RS13910	0.38	+0.3
3,164,844	-				-0.1
3,164,874	+		DDA3937_RS13910	0.43	-1.3
3,164,874	+		DDA3937_RS13910	0.43	+0.6
3,164,874	+		DDA3937_RS13910	0.43	-0.5
3,164,875	-		DDA3937_RS13910	0.44	-2.2
3,164,889	+		DDA3937_RS13910	0.46	+0.5
3,164,889	+		DDA3937_RS13910	0.46	-1.1
3,164,889	+		DDA3937_RS13910	0.46	-3.1
3,164,889	+		DDA3937_RS13910	0.46	-0.0
3,164,889	+				+0.5
3,164,889	+		DDA3937_RS13910	0.46	-2.4
3,164,890	-		DDA3937_RS13910	0.46	-0.5
3,164,890	-		DDA3937_RS13910	0.46	-1.3
3,164,890	-		DDA3937_RS13910	0.46	+1.0
3,164,890	-		DDA3937_RS13910	0.46	-1.6
3,164,890	-		DDA3937_RS13910	0.46	-2.3
3,164,897	+		DDA3937_RS13910	0.48	-1.0
3,164,898	-		DDA3937_RS13910	0.48	-1.5
3,165,022	+				-0.1
3,165,022	+		DDA3937_RS13910	0.70	-1.7
3,165,022	+		DDA3937_RS13910	0.70	-1.1
3,165,022	+		DDA3937_RS13910	0.70	+0.3
3,165,022	+		DDA3937_RS13910	0.70	-1.3
3,165,023	-		DDA3937_RS13910	0.71	-2.3
3,165,023	-		DDA3937_RS13910	0.71	-0.7
3,165,023	-		DDA3937_RS13910	0.71	-2.1
3,165,023	-		DDA3937_RS13910	0.71	-1.4
3,165,023	-		DDA3937_RS13910	0.71	+0.9
3,165,026	+		DDA3937_RS13910	0.71	-1.3
3,165,026	+		DDA3937_RS13910	0.71	-1.1
3,165,026	+		DDA3937_RS13910	0.71	-3.3
3,165,026	+		DDA3937_RS13910	0.71	+1.2
3,165,026	+		DDA3937_RS13910	0.71	-1.6
3,165,026	+		DDA3937_RS13910	0.71	+1.3
3,165,026	+		DDA3937_RS13910	0.71	+0.9
3,165,026	+		DDA3937_RS13910	0.71	+1.6
3,165,026	+		DDA3937_RS13910	0.71	+0.6
3,165,026	+		DDA3937_RS13910	0.71	-1.1
3,165,026	+		DDA3937_RS13910	0.71	-0.7
3,165,027	-		DDA3937_RS13910	0.71	-1.0
3,165,027	-		DDA3937_RS13910	0.71	+0.3
3,165,027	-		DDA3937_RS13910	0.71	-1.1
3,165,027	-		DDA3937_RS13910	0.71	+2.9
3,165,027	-		DDA3937_RS13910	0.71	+0.9
3,165,027	-		DDA3937_RS13910	0.71	-2.3
3,165,027	-		DDA3937_RS13910	0.71	-2.1
3,165,027	-		DDA3937_RS13910	0.71	-0.1
3,165,027	-		DDA3937_RS13910	0.71	-3.2
3,165,027	-		DDA3937_RS13910	0.71	-2.0
3,165,027	-		DDA3937_RS13910	0.71	-2.3
3,165,028	+		DDA3937_RS13910	0.72	-0.1
3,165,028	+		DDA3937_RS13910	0.72	+0.3
3,165,028	+		DDA3937_RS13910	0.72	+0.0
3,165,028	+		DDA3937_RS13910	0.72	-1.5
3,165,029	-		DDA3937_RS13910	0.72	-0.3
3,165,029	-		DDA3937_RS13910	0.72	-2.1
3,165,029	-		DDA3937_RS13910	0.72	-2.5
3,165,029	-		DDA3937_RS13910	0.72	+0.4
3,165,029	-		DDA3937_RS13910	0.72	-1.8
3,165,034	+		DDA3937_RS13910	0.73	-1.5
3,165,060	+		DDA3937_RS13910	0.77	-1.9
3,165,060	+		DDA3937_RS13910	0.77	+0.0
3,165,067	+		DDA3937_RS13910	0.79	+0.4
3,165,093	+		DDA3937_RS13910	0.83	-0.6
3,165,150	+				-1.3
3,165,151	-				-1.0
3,165,151	-				-0.1
3,165,164	+				-1.6
3,165,165	-				-0.7
3,165,165	-				+0.9
3,165,175	+				+1.1
3,165,175	+				-0.5
3,165,175	+				-1.0
3,165,175	+				+0.5
3,165,176	-				-2.0
3,165,176	-				-1.0
3,165,176	-				-1.8
3,165,176	-				-0.1
3,165,218	+				-3.1
3,165,218	+				+1.1
3,165,219	-				-1.0
3,165,219	-				-0.2
3,165,219	-				-0.5
3,165,221	+				+0.3
3,165,221	+				+1.0
3,165,221	+				+1.1
3,165,221	+				-0.8
3,165,221	+				+0.1
3,165,222	-				-1.6
3,165,222	-				-2.0
3,165,222	-				+1.8
3,165,222	-				-1.2
3,165,226	+				+0.1
3,165,226	+				-1.3
3,165,226	+				-0.5
3,165,226	+				-0.7
3,165,227	-				-1.5
3,165,252	+				-0.4
3,165,252	+				+1.3
3,165,252	+				-0.0
3,165,252	+				-0.7
3,165,253	-				-0.5
3,165,253	-				-1.2
3,165,253	-				-0.2
3,165,262	+				-3.1
3,165,262	+				-1.2
3,165,263	-				+0.7
3,165,304	+				+1.6
3,165,305	-				-2.2
3,165,305	-				-1.6
3,165,308	+				+0.3
3,165,308	+				-0.5
3,165,308	+				-1.6
3,165,308	+				+0.1
3,165,335	+				+0.9
3,165,335	+				-1.5
3,165,335	+				-1.2
3,165,336	-				-0.5
3,165,336	-				+0.6
3,165,340	+				+0.1
3,165,340	+				+0.3
3,165,340	+				-1.4
3,165,340	+				-1.2
3,165,340	+				-1.0
3,165,340	+				-1.3
3,165,340	+				-0.7
3,165,340	+				-1.2
3,165,341	-				-0.1
3,165,341	-				-0.8
3,165,341	-				-2.4
3,165,341	-				-1.2
3,165,341	-				+0.5
3,165,341	-				+0.8
3,165,341	-				-1.7
3,165,406	+				+0.3
3,165,406	+				+0.3
3,165,407	-				+1.8
3,165,440	-		DDA3937_RS22355	0.16	-0.6
3,165,517	-		DDA3937_RS22355	0.73	-0.6
3,165,517	-		DDA3937_RS22355	0.73	+0.1
3,165,551	+				-0.0
3,165,552	-				-0.5
3,165,574	+				-1.5
3,165,575	-				-1.2
3,165,575	-				-1.2
3,165,792	+		DDA3937_RS13920	0.77	-2.8
3,165,822	-				-0.1
3,165,822	-		DDA3937_RS13920	0.86	-0.7
3,165,841	-				-1.6
3,165,844	-				-0.5
3,165,848	+				-0.1
3,165,848	+				+1.3
3,165,849	-				-0.5
3,165,851	-				-0.1
3,165,864	+				-1.2
3,165,865	-				-1.6
3,165,865	-				+0.0
3,165,869	-				-1.2
3,165,869	-				-1.6
3,165,869	-				-0.8
3,165,881	-				-1.5
3,165,921	+		DDA3937_RS13925	0.23	-1.3
3,165,944	+		DDA3937_RS13925	0.32	-0.7
3,166,085	+				-2.1
3,166,085	+				-2.0
3,166,086	-				+0.5
3,166,086	-				+0.0
3,166,086	-				-1.2
3,166,117	+				+0.7
3,166,117	+				-0.7
3,166,117	+				+0.3
3,166,118	-				-1.0
3,166,124	+				-2.2
3,166,124	+				+0.4
3,166,124	+				-1.6
3,166,125	-				-1.1
3,166,125	-				+1.3
3,166,125	-				+0.3
3,166,125	-				-3.0
3,166,135	+				+0.9
3,166,135	+				-2.5
3,166,135	+				-1.6
3,166,135	+				-2.6
3,166,135	+				+3.9
3,166,136	-				-1.3
3,166,136	-				-1.3
3,166,147	+				-0.7
3,166,147	+				+0.9
3,166,147	+				-0.2
3,166,148	-				-0.0
3,166,148	-				-1.1
3,166,153	+				-1.0
3,166,153	+				-1.4
3,166,153	+				-2.3
3,166,153	+				-1.7
3,166,153	+				-0.1
3,166,154	-				-0.5
3,166,154	-				-1.1
3,166,154	-				-0.7
3,166,158	+				-0.9
3,166,158	+				-1.2
3,166,159	-				-3.2
3,166,235	-				+1.6
3,166,235	-				-0.5
3,166,306	+				-0.9
3,166,306	+				-2.8
3,166,306	+				-1.3
3,166,307	-				-1.3
3,166,307	-				-0.5
3,166,336	+				-0.8
3,166,343	+				+2.4
3,166,344	-				+1.3
3,166,359	+				-1.0
3,166,359	+				-1.9
3,166,359	+				-2.2
3,166,359	+				-0.9
3,166,360	-				-2.3
3,166,363	-				-0.7
3,166,363	-				-1.7
3,166,368	+				+0.1
3,166,368	+				-0.5
3,166,369	-				-0.8
3,166,369	-				+0.3
3,166,371	+				-2.9
3,166,371	+				+0.9
3,166,371	+				-0.5
3,166,371	+				-1.7
3,166,494	+		DDA3937_RS13930	0.42	-0.5
3,166,494	+		DDA3937_RS13930	0.42	-0.9
3,166,495	-		DDA3937_RS13930	0.42	-1.8
3,166,573	+		DDA3937_RS13930	0.70	-1.9
3,166,573	+				+0.3
3,166,574	-		DDA3937_RS13930	0.70	-0.3
3,166,576	-		DDA3937_RS13930	0.71	-1.1
3,166,714	+				-0.4
3,166,739	+				-1.6
3,166,739	+				-0.7
3,166,739	+				-0.7
3,166,739	+				-1.5
3,166,739	+				-0.5
3,166,739	+				-2.0
3,166,740	-				-0.0
3,166,740	-				-0.9
3,166,740	-				+3.0
3,166,836	+				-1.3
3,166,836	+				-2.1
3,166,837	-				-2.0