Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13905

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,163,063	+				+0.8
3,163,189	-		DDA3937_RS23495	0.25	+0.8
3,163,289	+		DDA3937_RS23495	0.41	-1.6
3,163,290	-		DDA3937_RS23495	0.41	-0.2
3,163,290	-		DDA3937_RS23495	0.41	-2.0
3,163,396	-		DDA3937_RS23495	0.57	-1.5
3,163,403	-		DDA3937_RS23495	0.58	-2.2
3,163,573	-		DDA3937_RS23495	0.85	-1.2
3,163,645	-				+0.1
3,163,704	+				-1.5
3,163,707	-				-0.7
3,163,720	+				+0.8
3,163,721	-				-3.0
3,163,721	-				+2.8
3,163,724	+				-0.6
3,163,724	+				+0.1
3,163,725	-				-2.4
3,163,726	+				-1.7
3,163,727	-				-1.9
3,163,727	-				+0.3
3,163,727	-				-1.2
3,163,727	-				-0.7
3,163,727	-				+1.3
3,163,733	+				-0.6
3,163,734	-				-1.2
3,163,734	-				+0.8
3,163,836	+				+0.5
3,163,837	-				-2.6
3,163,878	+				+0.3
3,163,878	+				-1.6
3,163,878	+				-1.6
3,163,879	-				-0.2
3,163,934	-				+0.5
3,164,009	+				-0.1
3,164,009	+				-1.9
3,164,010	-				+1.0
3,164,058	-		DDA3937_RS13905	0.17	+0.0
3,164,215	-		DDA3937_RS13905	0.52	-1.6
3,164,238	+		DDA3937_RS13905	0.57	+0.8
3,164,238	+		DDA3937_RS13905	0.57	-0.7
3,164,239	-				+0.8
3,164,255	+		DDA3937_RS13905	0.61	-2.5
3,164,271	+		DDA3937_RS13905	0.65	-1.0
3,164,271	+		DDA3937_RS13905	0.65	-1.6
3,164,272	-		DDA3937_RS13905	0.65	+0.5
3,164,291	+		DDA3937_RS13905	0.69	-2.7
3,164,291	+		DDA3937_RS13905	0.69	+0.5
3,164,345	+		DDA3937_RS13905	0.81	-3.3
3,164,346	-		DDA3937_RS13905	0.82	-1.7
3,164,384	-				+0.3
3,164,417	+				-0.9
3,164,417	+				+0.4
3,164,417	+				-0.2
3,164,417	+				-2.0
3,164,417	+				-2.0
3,164,417	+				-0.5
3,164,417	+				+0.3
3,164,418	-				+0.5
3,164,418	-				-1.3
3,164,418	-				-0.3
3,164,418	-				-1.0
3,164,421	+				-0.1
3,164,452	+				+1.2
3,164,452	+				-0.7
3,164,470	+				-0.2
3,164,470	+				+1.1
3,164,470	+				-0.7
3,164,471	-				-0.2
3,164,471	-				+0.5
3,164,471	-				+0.3
3,164,471	-				-2.1
3,164,479	-				-2.4
3,164,481	+				-0.3
3,164,482	-				-1.0
3,164,503	+				-0.6
3,164,504	-				-0.7
3,164,504	-				-0.7
3,164,504	-				-1.5
3,164,504	-				+0.7
3,164,504	-				+0.7
3,164,516	+				-0.3
3,164,517	-				+0.8
3,164,550	-				+1.5
3,164,550	-				-0.2
3,164,577	-				+0.5
3,164,577	-				-1.8
3,164,577	-				-2.2
3,164,610	+				-0.6
3,164,611	-				-2.4
3,164,614	+				+0.3
3,164,614	+				+0.9
3,164,614	+				-2.8
3,164,615	-				-1.6
3,164,615	-				-0.5
3,164,615	-				-1.0
3,164,628	+				-1.5
3,164,628	+				-1.0
3,164,628	+				-1.1
3,164,628	+				+0.9
3,164,629	-				+0.5
3,164,629	-				+0.4
3,164,629	-				-0.4
3,164,629	-				-0.5
3,164,729	+		DDA3937_RS13910	0.17	-1.3
3,164,729	+		DDA3937_RS13910	0.17	-0.7
3,164,730	-		DDA3937_RS13910	0.17	+0.3
3,164,730	-				-0.5
3,164,738	-		DDA3937_RS13910	0.19	-1.6
3,164,794	+		DDA3937_RS13910	0.29	+0.3
3,164,794	+		DDA3937_RS13910	0.29	-1.3
3,164,843	+		DDA3937_RS13910	0.38	+0.6
3,164,843	+				-0.1
3,164,843	+				+2.9
3,164,844	-		DDA3937_RS13910	0.38	+0.3
3,164,844	-				-0.1
3,164,874	+		DDA3937_RS13910	0.43	-1.3
3,164,874	+		DDA3937_RS13910	0.43	+0.6
3,164,874	+		DDA3937_RS13910	0.43	-0.5
3,164,875	-		DDA3937_RS13910	0.44	-2.2
3,164,889	+		DDA3937_RS13910	0.46	+0.5
3,164,889	+		DDA3937_RS13910	0.46	-1.1
3,164,889	+		DDA3937_RS13910	0.46	-3.1
3,164,889	+		DDA3937_RS13910	0.46	-0.0
3,164,889	+				+0.5
3,164,889	+		DDA3937_RS13910	0.46	-2.4
3,164,890	-		DDA3937_RS13910	0.46	-0.5
3,164,890	-		DDA3937_RS13910	0.46	-1.3
3,164,890	-		DDA3937_RS13910	0.46	+1.0
3,164,890	-		DDA3937_RS13910	0.46	-1.6
3,164,890	-		DDA3937_RS13910	0.46	-2.3
3,164,897	+		DDA3937_RS13910	0.48	-1.0
3,164,898	-		DDA3937_RS13910	0.48	-1.5
3,165,022	+				-0.1
3,165,022	+		DDA3937_RS13910	0.70	-1.7
3,165,022	+		DDA3937_RS13910	0.70	-1.1
3,165,022	+		DDA3937_RS13910	0.70	+0.3
3,165,022	+		DDA3937_RS13910	0.70	-1.3
3,165,023	-		DDA3937_RS13910	0.71	-2.3
3,165,023	-		DDA3937_RS13910	0.71	-0.7
3,165,023	-		DDA3937_RS13910	0.71	-2.1
3,165,023	-		DDA3937_RS13910	0.71	-1.4
3,165,023	-		DDA3937_RS13910	0.71	+0.9
3,165,026	+		DDA3937_RS13910	0.71	-1.3
3,165,026	+		DDA3937_RS13910	0.71	-1.1
3,165,026	+		DDA3937_RS13910	0.71	-3.3
3,165,026	+		DDA3937_RS13910	0.71	+1.2
3,165,026	+		DDA3937_RS13910	0.71	-1.6
3,165,026	+		DDA3937_RS13910	0.71	+1.3
3,165,026	+		DDA3937_RS13910	0.71	+0.9
3,165,026	+		DDA3937_RS13910	0.71	+1.6
3,165,026	+		DDA3937_RS13910	0.71	+0.6
3,165,026	+		DDA3937_RS13910	0.71	-1.1
3,165,026	+		DDA3937_RS13910	0.71	-0.7
3,165,027	-		DDA3937_RS13910	0.71	-1.0
3,165,027	-		DDA3937_RS13910	0.71	+0.3
3,165,027	-		DDA3937_RS13910	0.71	-1.1
3,165,027	-		DDA3937_RS13910	0.71	+2.9
3,165,027	-		DDA3937_RS13910	0.71	+0.9
3,165,027	-		DDA3937_RS13910	0.71	-2.3
3,165,027	-		DDA3937_RS13910	0.71	-2.1
3,165,027	-		DDA3937_RS13910	0.71	-0.1
3,165,027	-		DDA3937_RS13910	0.71	-3.2
3,165,027	-		DDA3937_RS13910	0.71	-2.0
3,165,027	-		DDA3937_RS13910	0.71	-2.3
3,165,028	+		DDA3937_RS13910	0.72	-0.1
3,165,028	+		DDA3937_RS13910	0.72	+0.3
3,165,028	+		DDA3937_RS13910	0.72	+0.0
3,165,028	+		DDA3937_RS13910	0.72	-1.5
3,165,029	-		DDA3937_RS13910	0.72	-0.3
3,165,029	-		DDA3937_RS13910	0.72	-2.1
3,165,029	-		DDA3937_RS13910	0.72	-2.5
3,165,029	-		DDA3937_RS13910	0.72	+0.4
3,165,029	-		DDA3937_RS13910	0.72	-1.8
3,165,034	+		DDA3937_RS13910	0.73	-1.5
3,165,060	+		DDA3937_RS13910	0.77	-1.9
3,165,060	+		DDA3937_RS13910	0.77	+0.0
3,165,067	+		DDA3937_RS13910	0.79	+0.4
3,165,093	+		DDA3937_RS13910	0.83	-0.6
3,165,150	+				-1.3
3,165,151	-				-1.0
3,165,151	-				-0.1
3,165,164	+				-1.6
3,165,165	-				-0.7
3,165,165	-				+0.9
3,165,175	+				+1.1
3,165,175	+				-0.5
3,165,175	+				-1.0
3,165,175	+				+0.5
3,165,176	-				-2.0
3,165,176	-				-1.0
3,165,176	-				-1.8
3,165,176	-				-0.1
3,165,218	+				-3.1
3,165,218	+				+1.1
3,165,219	-				-1.0
3,165,219	-				-0.2
3,165,219	-				-0.5
3,165,221	+				+0.3
3,165,221	+				+1.0
3,165,221	+				+1.1
3,165,221	+				-0.8
3,165,221	+				+0.1
3,165,222	-				-1.6
3,165,222	-				-2.0
3,165,222	-				+1.8
3,165,222	-				-1.2
3,165,226	+				+0.1
3,165,226	+				-1.3
3,165,226	+				-0.5
3,165,226	+				-0.7
3,165,227	-				-1.5
3,165,252	+				-0.4
3,165,252	+				+1.3
3,165,252	+				-0.0
3,165,252	+				-0.7
3,165,253	-				-0.5
3,165,253	-				-1.2
3,165,253	-				-0.2
3,165,262	+				-3.1
3,165,262	+				-1.2
3,165,263	-				+0.7
3,165,304	+				+1.6
3,165,305	-				-2.2
3,165,305	-				-1.6
3,165,308	+				+0.3
3,165,308	+				-0.5
3,165,308	+				-1.6
3,165,308	+				+0.1
3,165,335	+				+0.9
3,165,335	+				-1.5
3,165,335	+				-1.2
3,165,336	-				-0.5
3,165,336	-				+0.6
3,165,340	+				+0.1
3,165,340	+				+0.3
3,165,340	+				-1.4
3,165,340	+				-1.2
3,165,340	+				-1.0
3,165,340	+				-1.3
3,165,340	+				-0.7
3,165,340	+				-1.2
3,165,341	-				-0.1
3,165,341	-				-0.8
3,165,341	-				-2.4
3,165,341	-				-1.2
3,165,341	-				+0.5
3,165,341	-				+0.8
3,165,341	-				-1.7
3,165,406	+				+0.3
3,165,406	+				+0.3
3,165,407	-				+1.8