Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12245

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,780,702	+				+3.0
2,780,702	+				+1.8
2,780,702	+				+0.2
2,780,702	+				+1.8
2,780,703	-				+2.5
2,780,703	-				+1.0
2,780,726	+				+1.8
2,780,726	+				+1.9
2,780,761	+				+4.6
2,780,761	+				+1.8
2,780,818	-				-1.8
2,780,869	+		DDA3937_RS12240	0.18	-1.5
2,780,870	-		DDA3937_RS12240	0.18	-0.7
2,780,934	+		DDA3937_RS12240	0.29	+1.1
2,781,085	-		DDA3937_RS12240	0.55	-0.8
2,781,089	-		DDA3937_RS12240	0.55	-1.1
2,781,129	+		DDA3937_RS12240	0.62	+1.4
2,781,322	+				+0.9
2,781,363	+				-0.4
2,781,363	+				+1.2
2,781,363	+				+1.0
2,781,408	-				+0.5
2,781,504	+				-0.2
2,781,505	-				+0.2
2,781,505	-				-0.2
2,781,537	-				-1.4
2,781,537	-				-0.9
2,781,538	+				-1.0
2,781,555	+				-0.8
2,781,631	+				-0.5
2,781,632	-				+0.2
2,781,632	-				-1.0
2,781,637	+				-0.9
2,781,661	-				-1.4
2,781,661	-				-0.2
2,781,678	+				-1.2
2,781,678	+				-3.0
2,781,693	-				-0.8
2,781,693	-				-1.4
2,781,693	-				-2.3
2,781,693	-				-0.5
2,781,703	-				-0.5
2,781,703	-				-0.6
2,781,717	+				-2.2
2,781,717	+				-1.0
2,781,718	-				-1.2
2,781,718	-				-2.1
2,781,726	+				-1.6
2,782,017	-		DDA3937_RS12245	0.39	-1.8
2,782,069	-		DDA3937_RS12245	0.46	-0.8
2,782,156	+		DDA3937_RS12245	0.56	-3.8
2,782,310	-		DDA3937_RS12245	0.75	-1.7
2,782,371	+		DDA3937_RS12245	0.83	-2.5
2,782,498	+				-0.5
2,782,499	-				-1.2
2,782,541	+				+0.0
2,782,553	+				-2.8
2,782,553	+				+0.2
2,782,553	+				+1.1
2,782,667	-				-0.6
2,782,667	-				-1.0
2,782,667	-				-0.5
2,782,669	+				-1.0
2,782,670	-				+0.3
2,782,688	+				-0.5
2,782,688	+				-0.6
2,782,689	-				-0.2
2,782,690	+				-1.0
2,782,691	-				+0.2
2,782,691	-				-1.5
2,782,691	-				-1.0
2,782,691	-				+1.0
2,782,691	-				-0.3
2,782,703	+				-1.0
2,782,704	-				-0.5
2,782,757	+				+0.2
2,782,758	-				-2.4
2,782,758	-				-2.4
2,782,768	-				-1.4
2,782,793	+				-1.9
2,782,814	-				-0.2
2,782,859	-				-0.6
2,782,871	-				+1.5
2,782,945	+				-1.0
2,782,946	-				-0.8
2,782,984	+		DDA3937_RS12250	0.10	+0.4
2,782,985	-		DDA3937_RS12250	0.10	-0.3
2,783,011	+		DDA3937_RS12250	0.12	-1.8
2,783,012	-		DDA3937_RS12250	0.12	-1.0
2,783,020	+		DDA3937_RS12250	0.13	-1.6
2,783,020	+		DDA3937_RS12250	0.13	-0.4
2,783,020	+		DDA3937_RS12250	0.13	+0.0
2,783,021	-		DDA3937_RS12250	0.13	+0.2
2,783,021	-		DDA3937_RS12250	0.13	+1.4
2,783,034	-		DDA3937_RS12250	0.14	-0.5
2,783,034	-		DDA3937_RS12250	0.14	-2.9
2,783,055	+		DDA3937_RS12250	0.15	-0.8
2,783,061	+		DDA3937_RS12250	0.15	+0.2
2,783,061	+		DDA3937_RS12250	0.15	+1.8
2,783,061	+		DDA3937_RS12250	0.15	-3.5
2,783,061	+		DDA3937_RS12250	0.15	-2.1
2,783,061	+		DDA3937_RS12250	0.15	-0.8
2,783,061	+		DDA3937_RS12250	0.15	-2.8
2,783,061	+		DDA3937_RS12250	0.15	-2.2
2,783,062	-		DDA3937_RS12250	0.15	+0.8
2,783,062	-		DDA3937_RS12250	0.15	-0.5
2,783,062	-		DDA3937_RS12250	0.15	-1.3
2,783,062	-		DDA3937_RS12250	0.15	+0.3
2,783,062	-		DDA3937_RS12250	0.15	-1.4
2,783,063	+		DDA3937_RS12250	0.15	-0.5
2,783,068	+		DDA3937_RS12250	0.16	-3.5
2,783,069	-		DDA3937_RS12250	0.16	+2.2
2,783,069	-		DDA3937_RS12250	0.16	+0.1
2,783,069	-		DDA3937_RS12250	0.16	-0.8
2,783,095	+		DDA3937_RS12250	0.17	+0.6
2,783,095	+		DDA3937_RS12250	0.17	-0.8
2,783,095	+		DDA3937_RS12250	0.17	-0.8
2,783,095	+		DDA3937_RS12250	0.17	-0.6
2,783,095	+		DDA3937_RS12250	0.17	-2.2
2,783,095	+		DDA3937_RS12250	0.17	-2.9
2,783,095	+				+3.2
2,783,095	+		DDA3937_RS12250	0.17	+0.7
2,783,095	+		DDA3937_RS12250	0.17	-2.2
2,783,096	-		DDA3937_RS12250	0.18	-2.1
2,783,096	-		DDA3937_RS12250	0.18	+2.5
2,783,143	+		DDA3937_RS12250	0.21	+0.2
2,783,143	+		DDA3937_RS12250	0.21	-0.8
2,783,144	-		DDA3937_RS12250	0.21	-0.5
2,783,193	+		DDA3937_RS12250	0.24	-1.0
2,783,193	+		DDA3937_RS12250	0.24	-0.2
2,783,194	-		DDA3937_RS12250	0.24	+1.4
2,783,194	-		DDA3937_RS12250	0.24	+1.1
2,783,194	-		DDA3937_RS12250	0.24	+3.2
2,783,198	+		DDA3937_RS12250	0.24	-1.8
2,783,198	+		DDA3937_RS12250	0.24	+0.0
2,783,211	-		DDA3937_RS12250	0.25	+0.0
2,783,223	-		DDA3937_RS12250	0.26	+0.2
2,783,341	+		DDA3937_RS12250	0.33	-2.6
2,783,341	+		DDA3937_RS12250	0.33	+0.6
2,783,342	-		DDA3937_RS12250	0.33	+1.4
2,783,342	-		DDA3937_RS12250	0.33	+1.2
2,783,342	-		DDA3937_RS12250	0.33	+0.2
2,783,342	-		DDA3937_RS12250	0.33	-0.2
2,783,354	+				+0.2
2,783,355	-		DDA3937_RS12250	0.34	+0.7
2,783,355	-		DDA3937_RS12250	0.34	-0.9
2,783,375	+		DDA3937_RS12250	0.36	-1.4
2,783,396	+		DDA3937_RS12250	0.37	-2.6
2,783,396	+		DDA3937_RS12250	0.37	-2.6
2,783,397	-		DDA3937_RS12250	0.37	-0.4
2,783,397	-		DDA3937_RS12250	0.37	-0.1
2,783,397	-		DDA3937_RS12250	0.37	+0.5
2,783,399	+		DDA3937_RS12250	0.37	-1.2
2,783,399	+		DDA3937_RS12250	0.37	-2.6
2,783,399	+		DDA3937_RS12250	0.37	-1.5
2,783,399	+		DDA3937_RS12250	0.37	-0.8
2,783,399	+		DDA3937_RS12250	0.37	+1.2
2,783,401	+		DDA3937_RS12250	0.37	+0.7
2,783,401	+		DDA3937_RS12250	0.37	-1.9
2,783,401	+		DDA3937_RS12250	0.37	-1.4
2,783,401	+		DDA3937_RS12250	0.37	-1.0
2,783,402	-		DDA3937_RS12250	0.37	-0.5
2,783,402	-		DDA3937_RS12250	0.37	+0.8
2,783,402	-				+0.2
2,783,402	-		DDA3937_RS12250	0.37	-0.5
2,783,461	+		DDA3937_RS12250	0.41	-0.2
2,783,461	+		DDA3937_RS12250	0.41	-2.0
2,783,462	-		DDA3937_RS12250	0.41	-0.5
2,783,462	-		DDA3937_RS12250	0.41	-2.3
2,783,468	+		DDA3937_RS12250	0.42	-1.3
2,783,489	+		DDA3937_RS12250	0.43	-3.0