Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12235

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,778,402	+				-0.8
2,778,403	-				-0.5
2,778,403	-				+0.8
2,778,403	-				+1.1
2,778,403	-				-1.0
2,778,409	+				+0.5
2,778,410	-				-1.8
2,778,410	-				-0.6
2,778,410	-				+0.2
2,778,419	+				-2.8
2,778,420	-				-1.4
2,778,422	+				-1.0
2,778,422	+				-2.2
2,778,422	+				-2.7
2,778,423	-				+2.2
2,778,427	+				-0.7
2,778,427	+				-1.2
2,778,428	-				-2.1
2,778,429	+				-3.2
2,778,429	+				+2.4
2,778,429	+				+0.1
2,778,429	+				-2.4
2,778,429	+				-1.4
2,778,429	+				-1.0
2,778,429	+				-2.4
2,778,430	-				+0.2
2,778,430	-				+0.3
2,778,430	-				-0.5
2,778,430	-				+0.8
2,778,430	-				+0.9
2,778,430	-				+1.8
2,778,430	-				-0.5
2,778,430	-				+4.0
2,778,430	-				+1.0
2,778,432	+				+1.5
2,778,432	+				-1.2
2,778,432	+				-0.5
2,778,432	+				-1.9
2,778,432	+				-0.5
2,778,432	+				+1.8
2,778,432	+				-2.8
2,778,432	+				+0.2
2,778,432	+				+2.0
2,778,432	+				-1.1
2,778,432	+				-1.5
2,778,433	-				+1.1
2,778,433	-				+3.7
2,778,433	-				+3.3
2,778,433	-				+3.0
2,778,433	-				+2.3
2,778,433	-				-1.5
2,778,433	-				+2.7
2,778,433	-				+1.2
2,778,433	-				-0.2
2,778,433	-				+1.2
2,778,433	-				+3.9
2,778,433	-				+1.4
2,778,433	-				+3.0
2,778,433	-				+0.8
2,778,447	+				-1.8
2,778,448	-				+2.0
2,778,448	-				+2.7
2,778,453	+				-0.7
2,778,453	+				+0.3
2,778,453	+				-2.3
2,778,453	+				-1.0
2,778,453	+				-0.1
2,778,454	-				+0.7
2,778,454	-				+2.9
2,778,454	-				+0.3
2,778,454	-				-1.0
2,778,454	-				+2.4
2,778,555	+				+0.5
2,778,559	-				-0.2
2,778,588	+				+1.6
2,778,589	-				+1.1
2,778,590	+				+0.6
2,778,642	+				-0.2
2,778,643	-				-2.7
2,778,660	-				-1.2
2,778,764	+		DDA3937_RS12230	0.24	+1.2
2,778,812	-		DDA3937_RS12230	0.30	+1.1
2,778,812	-		DDA3937_RS12230	0.30	-0.2
2,778,876	+		DDA3937_RS12230	0.39	+1.3
2,778,876	+		DDA3937_RS12230	0.39	-0.8
2,778,876	+		DDA3937_RS12230	0.39	+0.5
2,778,876	+		DDA3937_RS12230	0.39	+2.7
2,778,877	-		DDA3937_RS12230	0.39	-0.2
2,778,877	-		DDA3937_RS12230	0.39	+0.9
2,778,877	-		DDA3937_RS12230	0.39	+2.0
2,778,878	+		DDA3937_RS12230	0.39	+1.1
2,778,878	+		DDA3937_RS12230	0.39	+1.1
2,778,879	-		DDA3937_RS12230	0.39	-0.8
2,778,940	-		DDA3937_RS12230	0.47	-2.3
2,779,013	+		DDA3937_RS12230	0.57	+1.4
2,779,013	+		DDA3937_RS12230	0.57	-1.0
2,779,014	-		DDA3937_RS12230	0.57	-0.3
2,779,014	-		DDA3937_RS12230	0.57	-0.5
2,779,014	-		DDA3937_RS12230	0.57	-0.5
2,779,166	+		DDA3937_RS12230	0.77	+0.4
2,779,188	+		DDA3937_RS12230	0.80	+0.4
2,779,188	+		DDA3937_RS12230	0.80	-1.5
2,779,243	+		DDA3937_RS12230	0.87	+1.6
2,779,243	+		DDA3937_RS12230	0.87	-2.2
2,779,243	+		DDA3937_RS12230	0.87	+0.6
2,779,245	+		DDA3937_RS12230	0.88	-0.7
2,779,246	-				-0.5
2,779,296	+				+0.5
2,779,296	+				-1.0
2,779,296	+				+0.7
2,779,348	+				+1.0
2,779,349	-				+0.7
2,779,412	+				-0.4
2,779,475	+		DDA3937_RS12235	0.10	-2.0
2,779,475	+		DDA3937_RS12235	0.10	+1.8
2,779,476	-		DDA3937_RS12235	0.10	-1.5
2,779,586	+		DDA3937_RS12235	0.19	+1.2
2,779,652	+		DDA3937_RS12235	0.23	-0.2
2,779,652	+		DDA3937_RS12235	0.23	-0.3
2,779,653	-		DDA3937_RS12235	0.24	+0.8
2,779,653	-		DDA3937_RS12235	0.24	-1.3
2,779,685	+		DDA3937_RS12235	0.26	+0.5
2,779,685	+		DDA3937_RS12235	0.26	+1.0
2,779,685	+		DDA3937_RS12235	0.26	+0.6
2,779,685	+		DDA3937_RS12235	0.26	-1.4
2,779,685	+		DDA3937_RS12235	0.26	-0.8
2,779,686	-		DDA3937_RS12235	0.26	+0.9
2,779,686	-		DDA3937_RS12235	0.26	+0.2
2,779,686	-		DDA3937_RS12235	0.26	+1.9
2,779,686	-		DDA3937_RS12235	0.26	+1.2
2,779,686	-		DDA3937_RS12235	0.26	+1.5
2,779,686	-		DDA3937_RS12235	0.26	+0.5
2,779,686	-		DDA3937_RS12235	0.26	+1.5
2,779,894	+		DDA3937_RS12235	0.41	+1.3
2,779,894	+		DDA3937_RS12235	0.41	+1.9
2,779,894	+		DDA3937_RS12235	0.41	+2.4
2,779,895	-		DDA3937_RS12235	0.41	+0.6
2,779,895	-		DDA3937_RS12235	0.41	-0.2
2,779,895	-		DDA3937_RS12235	0.41	+0.4
2,779,895	-		DDA3937_RS12235	0.41	+0.9
2,780,126	+		DDA3937_RS12235	0.58	+1.1
2,780,126	+		DDA3937_RS12235	0.58	+1.0
2,780,127	-		DDA3937_RS12235	0.58	-0.5
2,780,127	-		DDA3937_RS12235	0.58	+1.7
2,780,127	-		DDA3937_RS12235	0.58	+2.6
2,780,127	-		DDA3937_RS12235	0.58	-1.2
2,780,127	-		DDA3937_RS12235	0.58	+1.7
2,780,184	+		DDA3937_RS12235	0.63	+2.0
2,780,273	+		DDA3937_RS12235	0.69	+1.1
2,780,377	+		DDA3937_RS12235	0.77	-1.9
2,780,378	-		DDA3937_RS12235	0.77	-0.1
2,780,437	+		DDA3937_RS12235	0.81	+1.0
2,780,437	+		DDA3937_RS12235	0.81	-0.2
2,780,534	+		DDA3937_RS12235	0.88	+1.5
2,780,534	+		DDA3937_RS12235	0.88	-0.1
2,780,534	+		DDA3937_RS12235	0.88	-0.9
2,780,534	+		DDA3937_RS12235	0.88	+3.1
2,780,535	-		DDA3937_RS12235	0.89	+1.1
2,780,535	-		DDA3937_RS12235	0.89	-1.8
2,780,535	-		DDA3937_RS12235	0.89	-2.1
2,780,612	-				+1.3
2,780,646	+				+0.3
2,780,647	-				-0.1
2,780,692	+				+1.7
2,780,692	+				+2.9
2,780,692	+				+2.3
2,780,692	+				-0.2
2,780,692	+				+2.2
2,780,692	+				+1.9
2,780,692	+				+1.9
2,780,692	+				+3.6
2,780,692	+				+2.0
2,780,692	+				+2.8
2,780,692	+				-0.0
2,780,693	-				+1.3
2,780,693	-				+2.8
2,780,693	-				+0.3
2,780,693	-				-0.1
2,780,693	-				+2.6
2,780,693	-				+4.8
2,780,702	+				+3.0
2,780,702	+				+1.8
2,780,702	+				+0.2
2,780,702	+				+1.8
2,780,703	-				+2.5
2,780,703	-				+1.0
2,780,726	+				+1.8
2,780,726	+				+1.9
2,780,761	+				+4.6
2,780,761	+				+1.8
2,780,818	-				-1.8
2,780,869	+		DDA3937_RS12240	0.18	-1.5
2,780,870	-		DDA3937_RS12240	0.18	-0.7
2,780,934	+		DDA3937_RS12240	0.29	+1.1
2,781,085	-		DDA3937_RS12240	0.55	-0.8
2,781,089	-		DDA3937_RS12240	0.55	-1.1
2,781,129	+		DDA3937_RS12240	0.62	+1.4
2,781,322	+				+0.9
2,781,363	+				-0.4
2,781,363	+				+1.2
2,781,363	+				+1.0
2,781,408	-				+0.5
2,781,504	+				-0.2
2,781,505	-				+0.2
2,781,505	-				-0.2
2,781,537	-				-1.4
2,781,537	-				-0.9
2,781,538	+				-1.0
2,781,555	+				-0.8
2,781,631	+				-0.5
2,781,632	-				+0.2
2,781,632	-				-1.0
2,781,637	+				-0.9
2,781,661	-				-1.4
2,781,661	-				-0.2
2,781,678	+				-1.2
2,781,678	+				-3.0