Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12220

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,775,160	+		DDA3937_RS12215	0.36	-0.7
2,775,160	+		DDA3937_RS12215	0.36	+1.2
2,775,160	+		DDA3937_RS12215	0.36	+0.0
2,775,160	+		DDA3937_RS12215	0.36	-2.0
2,775,161	-		DDA3937_RS12215	0.36	-0.5
2,775,161	-		DDA3937_RS12215	0.36	-0.8
2,775,161	-		DDA3937_RS12215	0.36	-0.3
2,775,161	-		DDA3937_RS12215	0.36	-1.0
2,775,161	-		DDA3937_RS12215	0.36	+0.5
2,775,187	+		DDA3937_RS12215	0.39	-0.8
2,775,187	+		DDA3937_RS12215	0.39	+0.7
2,775,187	+		DDA3937_RS12215	0.39	-0.6
2,775,188	-		DDA3937_RS12215	0.39	-2.9
2,775,188	-		DDA3937_RS12215	0.39	-0.9
2,775,188	-		DDA3937_RS12215	0.39	-0.5
2,775,276	+		DDA3937_RS12215	0.47	-0.2
2,775,277	-		DDA3937_RS12215	0.47	-0.6
2,775,304	+		DDA3937_RS12215	0.49	-0.6
2,775,304	+		DDA3937_RS12215	0.49	+0.4
2,775,304	+		DDA3937_RS12215	0.49	+0.4
2,775,304	+		DDA3937_RS12215	0.49	-1.2
2,775,304	+		DDA3937_RS12215	0.49	-0.4
2,775,304	+		DDA3937_RS12215	0.49	+0.2
2,775,305	-		DDA3937_RS12215	0.49	-0.5
2,775,305	-		DDA3937_RS12215	0.49	-0.1
2,775,305	-		DDA3937_RS12215	0.49	-1.2
2,775,305	-		DDA3937_RS12215	0.49	-0.2
2,775,311	+		DDA3937_RS12215	0.50	-0.2
2,775,311	+		DDA3937_RS12215	0.50	-1.1
2,775,311	+		DDA3937_RS12215	0.50	-0.0
2,775,311	+		DDA3937_RS12215	0.50	-0.1
2,775,311	+		DDA3937_RS12215	0.50	+0.8
2,775,311	+		DDA3937_RS12215	0.50	-1.0
2,775,311	+		DDA3937_RS12215	0.50	-0.8
2,775,311	+		DDA3937_RS12215	0.50	-2.0
2,775,312	-		DDA3937_RS12215	0.50	-1.7
2,775,312	-		DDA3937_RS12215	0.50	-2.7
2,775,312	-		DDA3937_RS12215	0.50	-0.2
2,775,399	+		DDA3937_RS12215	0.58	-0.8
2,775,400	-		DDA3937_RS12215	0.58	-0.4
2,775,535	-		DDA3937_RS12215	0.70	+0.6
2,775,596	+		DDA3937_RS12215	0.76	-0.5
2,775,597	-		DDA3937_RS12215	0.76	-0.2
2,775,611	+		DDA3937_RS12215	0.77	-0.7
2,775,611	+		DDA3937_RS12215	0.77	-0.8
2,775,611	+		DDA3937_RS12215	0.77	-0.6
2,775,611	+		DDA3937_RS12215	0.77	-0.8
2,775,611	+		DDA3937_RS12215	0.77	-0.8
2,775,611	+		DDA3937_RS12215	0.77	-1.1
2,775,612	-		DDA3937_RS12215	0.77	-0.0
2,775,612	-		DDA3937_RS12215	0.77	-0.9
2,775,612	-		DDA3937_RS12215	0.77	-0.5
2,775,612	-		DDA3937_RS12215	0.77	-0.5
2,775,838	+				-0.0
2,775,838	+				-1.0
2,775,839	-				-0.7
2,775,859	+				-1.1
2,775,860	-				+0.5
2,775,909	+				-1.7
2,775,909	+				-0.8
2,775,910	-				-2.4
2,775,910	-				-0.0
2,775,912	-				-0.0
2,775,957	+				+0.6
2,775,987	+				-0.0
2,775,987	+				-2.5
2,775,987	+				-0.8
2,775,987	+				-1.1
2,775,987	+				-1.7
2,775,988	-				-2.3
2,775,988	-				-0.5
2,775,993	-				+2.2
2,776,151	+				+1.0
2,776,152	-				-0.1
2,776,203	+				-1.0
2,776,203	+				-0.9
2,776,203	+				-0.0
2,776,203	+				+0.8
2,776,204	-				-1.1
2,776,220	+				+0.1
2,776,221	-				-1.8
2,776,232	+				-0.1
2,776,320	+		DDA3937_RS12220	0.11	-3.3
2,776,321	-		DDA3937_RS12220	0.11	-0.7
2,776,321	-		DDA3937_RS12220	0.11	+1.7
2,776,321	-		DDA3937_RS12220	0.11	-2.0
2,776,407	-		DDA3937_RS12220	0.16	+2.2
2,776,481	-		DDA3937_RS12220	0.20	+0.6
2,776,521	+		DDA3937_RS12220	0.23	+0.2
2,776,521	+		DDA3937_RS12220	0.23	-0.8
2,776,521	+				+1.8
2,776,521	+		DDA3937_RS12220	0.23	-0.6
2,776,522	-		DDA3937_RS12220	0.23	-1.2
2,776,522	-		DDA3937_RS12220	0.23	-1.7
2,776,522	-		DDA3937_RS12220	0.23	-0.6
2,776,588	+		DDA3937_RS12220	0.27	-3.9
2,776,589	-		DDA3937_RS12220	0.27	-2.4
2,776,589	-		DDA3937_RS12220	0.27	-1.2
2,776,632	+		DDA3937_RS12220	0.29	+0.9
2,776,632	+		DDA3937_RS12220	0.29	+1.8
2,776,632	+		DDA3937_RS12220	0.29	-0.2
2,776,632	+		DDA3937_RS12220	0.29	+1.6
2,776,632	+		DDA3937_RS12220	0.29	+0.5
2,776,633	-		DDA3937_RS12220	0.29	-0.2
2,776,633	-		DDA3937_RS12220	0.29	-2.4
2,776,633	-		DDA3937_RS12220	0.29	+0.6
2,776,633	-		DDA3937_RS12220	0.29	-1.2
2,776,633	-		DDA3937_RS12220	0.29	+0.4
2,776,633	-		DDA3937_RS12220	0.29	+1.4
2,776,633	-		DDA3937_RS12220	0.29	+0.2
2,776,849	-		DDA3937_RS12220	0.42	+1.7
2,776,906	+		DDA3937_RS12220	0.45	-0.2
2,777,072	+		DDA3937_RS12220	0.55	-1.0
2,777,072	+		DDA3937_RS12220	0.55	+0.6
2,777,260	-		DDA3937_RS12220	0.66	+0.1
2,777,334	+		DDA3937_RS12220	0.70	-0.1
2,777,334	+		DDA3937_RS12220	0.70	+2.6
2,777,334	+		DDA3937_RS12220	0.70	-1.8
2,777,335	-		DDA3937_RS12220	0.70	+0.2
2,777,364	-		DDA3937_RS12220	0.72	+0.8
2,777,364	-		DDA3937_RS12220	0.72	+0.8
2,777,372	-		DDA3937_RS12220	0.72	-2.2
2,777,408	+		DDA3937_RS12220	0.75	+3.5
2,777,612	+		DDA3937_RS12220	0.86	+1.2
2,777,613	-		DDA3937_RS12220	0.86	+0.2
2,777,753	+				-1.6
2,777,754	-				-1.7
2,777,754	-				-0.2
2,777,841	+				+0.4
2,777,842	-				-0.6
2,777,899	+				+0.6
2,777,938	-				+0.8
2,778,038	+		DDA3937_RS12225	0.30	-1.7
2,778,038	+		DDA3937_RS12225	0.30	-2.1
2,778,087	+		DDA3937_RS12225	0.41	-2.8
2,778,088	-		DDA3937_RS12225	0.41	-0.5
2,778,159	+		DDA3937_RS12225	0.58	+0.7
2,778,159	+		DDA3937_RS12225	0.58	-1.9
2,778,159	+		DDA3937_RS12225	0.58	-0.5
2,778,160	-		DDA3937_RS12225	0.58	-1.2
2,778,228	-		DDA3937_RS12225	0.73	-2.4
2,778,276	-		DDA3937_RS12225	0.84	-1.5
2,778,282	+		DDA3937_RS12225	0.85	-2.4
2,778,282	+		DDA3937_RS12225	0.85	-1.7
2,778,283	-		DDA3937_RS12225	0.86	+0.2
2,778,284	+		DDA3937_RS12225	0.86	-0.0
2,778,284	+		DDA3937_RS12225	0.86	-0.5
2,778,284	+		DDA3937_RS12225	0.86	-1.0
2,778,402	+				-0.8
2,778,403	-				-0.5
2,778,403	-				+0.8
2,778,403	-				+1.1
2,778,403	-				-1.0
2,778,409	+				+0.5
2,778,410	-				-1.8
2,778,410	-				-0.6
2,778,410	-				+0.2
2,778,419	+				-2.8
2,778,420	-				-1.4
2,778,422	+				-1.0
2,778,422	+				-2.2
2,778,422	+				-2.7
2,778,423	-				+2.2
2,778,427	+				-0.7
2,778,427	+				-1.2
2,778,428	-				-2.1
2,778,429	+				-3.2
2,778,429	+				+2.4
2,778,429	+				+0.1
2,778,429	+				-2.4
2,778,429	+				-1.4
2,778,429	+				-1.0
2,778,429	+				-2.4
2,778,430	-				+0.2
2,778,430	-				+0.3
2,778,430	-				-0.5
2,778,430	-				+0.8
2,778,430	-				+0.9
2,778,430	-				+1.8
2,778,430	-				-0.5
2,778,430	-				+4.0
2,778,430	-				+1.0
2,778,432	+				+1.5
2,778,432	+				-1.2
2,778,432	+				-0.5
2,778,432	+				-1.9
2,778,432	+				-0.5
2,778,432	+				+1.8
2,778,432	+				-2.8
2,778,432	+				+0.2
2,778,432	+				+2.0
2,778,432	+				-1.1
2,778,432	+				-1.5
2,778,433	-				+1.1
2,778,433	-				+3.7
2,778,433	-				+3.3
2,778,433	-				+3.0
2,778,433	-				+2.3
2,778,433	-				-1.5
2,778,433	-				+2.7
2,778,433	-				+1.2
2,778,433	-				-0.2
2,778,433	-				+1.2
2,778,433	-				+3.9
2,778,433	-				+1.4
2,778,433	-				+3.0
2,778,433	-				+0.8
2,778,447	+				-1.8
2,778,448	-				+2.0
2,778,448	-				+2.7
2,778,453	+				-0.7
2,778,453	+				+0.3
2,778,453	+				-2.3
2,778,453	+				-1.0
2,778,453	+				-0.1
2,778,454	-				+0.7
2,778,454	-				+2.9
2,778,454	-				+0.3
2,778,454	-				-1.0
2,778,454	-				+2.4
2,778,555	+				+0.5
2,778,559	-				-0.2
2,778,588	+				+1.6
2,778,589	-				+1.1
2,778,590	+				+0.6
2,778,642	+				-0.2
2,778,643	-				-2.7
2,778,660	-				-1.2
2,778,764	+		DDA3937_RS12230	0.24	+1.2
2,778,812	-		DDA3937_RS12230	0.30	+1.1
2,778,812	-		DDA3937_RS12230	0.30	-0.2