Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12110

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,750,805	+				+0.2
2,750,806	-		DDA3937_RS12100	0.77	-2.3
2,750,811	-		DDA3937_RS12100	0.78	+0.1
2,750,865	-		DDA3937_RS12100	0.85	+0.3
2,750,879	+		DDA3937_RS12100	0.87	+1.8
2,750,879	+		DDA3937_RS12100	0.87	-3.1
2,750,879	+		DDA3937_RS12100	0.87	-0.9
2,750,879	+		DDA3937_RS12100	0.87	-1.2
2,750,880	-		DDA3937_RS12100	0.88	+0.2
2,750,881	+		DDA3937_RS12100	0.88	-0.6
2,750,882	-		DDA3937_RS12100	0.88	-0.8
2,750,884	+		DDA3937_RS12100	0.88	+0.6
2,750,884	+		DDA3937_RS12100	0.88	-0.2
2,750,884	+		DDA3937_RS12100	0.88	+0.2
2,750,885	-		DDA3937_RS12100	0.88	-1.8
2,750,945	+				-2.1
2,750,945	+				-0.2
2,750,945	+				+1.3
2,750,945	+				-0.2
2,750,946	-				-1.0
2,750,946	-				-0.8
2,750,946	-				-3.1
2,750,946	-				+0.4
2,751,001	-				-0.8
2,751,031	+		DDA3937_RS12105	0.10	-1.2
2,751,031	+		DDA3937_RS12105	0.10	-0.8
2,751,036	+		DDA3937_RS12105	0.11	+0.2
2,751,036	+		DDA3937_RS12105	0.11	+0.8
2,751,037	-		DDA3937_RS12105	0.11	-2.3
2,751,043	+		DDA3937_RS12105	0.12	-0.1
2,751,048	+		DDA3937_RS12105	0.13	-1.8
2,751,070	+		DDA3937_RS12105	0.17	-1.2
2,751,070	+		DDA3937_RS12105	0.17	-1.2
2,751,071	-		DDA3937_RS12105	0.17	+0.2
2,751,071	-		DDA3937_RS12105	0.17	-0.8
2,751,071	-		DDA3937_RS12105	0.17	-0.5
2,751,071	-		DDA3937_RS12105	0.17	-0.2
2,751,071	-		DDA3937_RS12105	0.17	+0.3
2,751,071	-		DDA3937_RS12105	0.17	+2.4
2,751,073	-		DDA3937_RS12105	0.17	-2.1
2,751,073	-		DDA3937_RS12105	0.17	+0.8
2,751,073	-				-0.2
2,751,078	+		DDA3937_RS12105	0.18	-0.5
2,751,079	-		DDA3937_RS12105	0.18	-0.1
2,751,091	+		DDA3937_RS12105	0.20	-0.8
2,751,105	+		DDA3937_RS12105	0.22	-0.5
2,751,165	+		DDA3937_RS12105	0.32	-0.8
2,751,178	-		DDA3937_RS12105	0.34	-0.3
2,751,229	+		DDA3937_RS12105	0.43	-2.2
2,751,229	+		DDA3937_RS12105	0.43	-0.1
2,751,229	+		DDA3937_RS12105	0.43	-0.3
2,751,229	+		DDA3937_RS12105	0.43	+0.9
2,751,230	-		DDA3937_RS12105	0.43	-2.7
2,751,230	-		DDA3937_RS12105	0.43	-1.4
2,751,230	-		DDA3937_RS12105	0.43	-0.7
2,751,230	-		DDA3937_RS12105	0.43	-1.0
2,751,230	-		DDA3937_RS12105	0.43	-2.8
2,751,230	-		DDA3937_RS12105	0.43	-0.8
2,751,230	-		DDA3937_RS12105	0.43	-1.2
2,751,234	+		DDA3937_RS12105	0.43	-0.5
2,751,234	+		DDA3937_RS12105	0.43	+0.2
2,751,234	+		DDA3937_RS12105	0.43	-0.8
2,751,406	+		DDA3937_RS12105	0.72	-0.8
2,751,407	-		DDA3937_RS12105	0.72	-0.6
2,751,508	+		DDA3937_RS12105	0.88	+0.9
2,751,508	+		DDA3937_RS12105	0.88	-0.5
2,751,508	+		DDA3937_RS12105	0.88	+1.4
2,751,508	+		DDA3937_RS12105	0.88	+1.9
2,751,508	+				-0.2
2,751,508	+		DDA3937_RS12105	0.88	+0.3
2,751,508	+		DDA3937_RS12105	0.88	-2.5
2,751,509	-		DDA3937_RS12105	0.88	-1.1
2,751,509	-		DDA3937_RS12105	0.88	-2.7
2,751,509	-		DDA3937_RS12105	0.88	-2.1
2,751,509	-		DDA3937_RS12105	0.88	-1.0
2,751,509	-		DDA3937_RS12105	0.88	-2.4
2,751,509	-		DDA3937_RS12105	0.88	-0.5
2,751,510	+		DDA3937_RS12105	0.89	-1.0
2,751,510	+				-0.2
2,751,510	+		DDA3937_RS12105	0.89	-0.5
2,751,511	-		DDA3937_RS12105	0.89	-0.8
2,751,511	-		DDA3937_RS12105	0.89	-1.8
2,751,511	-		DDA3937_RS12105	0.89	-0.8
2,751,511	-		DDA3937_RS12105	0.89	-0.2
2,751,511	-		DDA3937_RS12105	0.89	-1.2
2,751,521	+				+0.3
2,751,666	-				+0.7
2,751,769	+				+0.4
2,751,773	-				+0.2
2,751,824	-				-2.0
2,751,870	+				-0.0
2,751,871	-				-1.0
2,751,871	-				+1.3
2,751,871	-				-0.3
2,751,871	-				-2.6
2,751,890	-				-0.3
2,751,938	-		DDA3937_RS12110	0.12	+0.6
2,751,938	-		DDA3937_RS12110	0.12	+1.8
2,752,127	+		DDA3937_RS12110	0.28	-2.3
2,752,127	+		DDA3937_RS12110	0.28	-2.2
2,752,128	-		DDA3937_RS12110	0.28	-0.8
2,752,128	-		DDA3937_RS12110	0.28	+1.5
2,752,285	+		DDA3937_RS12110	0.41	+0.7
2,752,285	+		DDA3937_RS12110	0.41	-1.8
2,752,285	+		DDA3937_RS12110	0.41	+0.8
2,752,285	+		DDA3937_RS12110	0.41	+0.5
2,752,286	-		DDA3937_RS12110	0.41	-0.6
2,752,310	+		DDA3937_RS12110	0.43	-1.1
2,752,311	-		DDA3937_RS12110	0.43	-0.3
2,752,311	-		DDA3937_RS12110	0.43	+0.1
2,752,401	-		DDA3937_RS12110	0.51	+0.5
2,752,514	+		DDA3937_RS12110	0.61	-1.4
2,752,652	+		DDA3937_RS12110	0.73	+1.6
2,752,652	+		DDA3937_RS12110	0.73	-0.4
2,752,757	-		DDA3937_RS12110	0.82	+1.1
2,752,757	-		DDA3937_RS12110	0.82	-1.2
2,752,793	+		DDA3937_RS12110	0.85	+2.4
2,752,793	+		DDA3937_RS12110	0.85	+0.4
2,752,794	-		DDA3937_RS12110	0.85	+2.6
2,752,794	-		DDA3937_RS12110	0.85	-1.7
2,752,794	-		DDA3937_RS12110	0.85	-1.0
2,752,865	+				-0.9
2,752,865	+				-2.0
2,752,865	+				-0.2
2,752,866	-				+0.5
2,752,866	-				-3.5
2,752,874	+				-0.2
2,752,875	-				-1.8
2,752,880	+				-0.4
2,752,880	+				-2.4
2,752,880	+				-0.8
2,752,880	+				+0.1
2,752,880	+				+0.7
2,752,881	-				-1.2
2,752,881	-				-1.0
2,752,924	+				-1.6
2,752,937	+				+0.2
2,752,937	+				-2.1
2,752,937	+				-0.8
2,752,937	+				-0.8
2,752,937	+				-0.5
2,752,937	+				-0.7
2,752,938	-				+0.1
2,752,938	-				+1.2
2,752,938	-				+0.3
2,752,938	-				-1.2
2,752,938	-				+2.2
2,752,970	+				-0.5
2,752,970	+				+0.2
2,752,971	-				-0.5
2,752,971	-				-0.3
2,752,971	-				-1.0
2,753,001	+				+2.4
2,753,002	-				+1.5
2,753,002	-				+1.5
2,753,007	+				-0.5
2,753,007	+				+0.9
2,753,007	+				-0.4
2,753,008	-				-1.2
2,753,008	-				-0.8
2,753,008	-				-0.6
2,753,012	-				-0.5
2,753,041	+		DDA3937_RS12115	0.10	-1.4
2,753,042	-				+2.8
2,753,213	-		DDA3937_RS12115	0.44	+0.6
2,753,261	-		DDA3937_RS12115	0.53	-1.6
2,753,389	+		DDA3937_RS12115	0.77	-2.2
2,753,390	-		DDA3937_RS12115	0.78	+0.7
2,753,390	-		DDA3937_RS12115	0.78	+1.3
2,753,390	-		DDA3937_RS12115	0.78	+0.0
2,753,390	-		DDA3937_RS12115	0.78	-0.5
2,753,392	+		DDA3937_RS12115	0.78	+0.2
2,753,392	+		DDA3937_RS12115	0.78	-1.4
2,753,392	+		DDA3937_RS12115	0.78	-1.4
2,753,392	+		DDA3937_RS12115	0.78	-1.5
2,753,392	+		DDA3937_RS12115	0.78	-1.4
2,753,393	-		DDA3937_RS12115	0.78	-0.3
2,753,393	-		DDA3937_RS12115	0.78	-1.0
2,753,542	-				-2.4
2,753,548	-				-2.0
2,753,752	+		DDA3937_RS12120	0.64	+0.2
2,753,753	-				+0.2
2,753,961	-				-0.2