Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12085

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,747,284	+		DDA3937_RS12080	0.60	-0.4
2,747,284	+		DDA3937_RS12080	0.60	-0.1
2,747,284	+		DDA3937_RS12080	0.60	-1.7
2,747,285	-		DDA3937_RS12080	0.60	+0.1
2,747,285	-		DDA3937_RS12080	0.60	+2.4
2,747,285	-		DDA3937_RS12080	0.60	+1.4
2,747,285	-		DDA3937_RS12080	0.60	+0.6
2,747,285	-		DDA3937_RS12080	0.60	-1.4
2,747,295	+		DDA3937_RS12080	0.61	+1.4
2,747,295	+		DDA3937_RS12080	0.61	+0.2
2,747,295	+		DDA3937_RS12080	0.61	-1.4
2,747,295	+		DDA3937_RS12080	0.61	-4.0
2,747,296	-		DDA3937_RS12080	0.61	-1.7
2,747,296	-		DDA3937_RS12080	0.61	-1.4
2,747,296	-		DDA3937_RS12080	0.61	-1.3
2,747,296	-		DDA3937_RS12080	0.61	-0.4
2,747,296	-		DDA3937_RS12080	0.61	-2.7
2,747,363	+		DDA3937_RS12080	0.66	-1.2
2,747,363	+		DDA3937_RS12080	0.66	-3.1
2,747,363	+		DDA3937_RS12080	0.66	-1.8
2,747,364	-		DDA3937_RS12080	0.66	-1.2
2,747,364	-		DDA3937_RS12080	0.66	+1.1
2,747,508	+		DDA3937_RS12080	0.77	+0.7
2,747,508	+		DDA3937_RS12080	0.77	-2.0
2,747,509	-		DDA3937_RS12080	0.77	-1.8
2,747,598	+		DDA3937_RS12080	0.83	-2.7
2,747,696	+				+0.1
2,747,723	+				+0.7
2,747,723	+				-1.4
2,747,723	+				-0.2
2,747,723	+				+0.7
2,747,724	-				+0.8
2,747,724	-				-0.2
2,747,724	-				-0.9
2,747,726	+				-3.0
2,747,726	+				+0.9
2,747,726	+				-0.0
2,747,727	-				-0.3
2,747,727	-				-1.2
2,747,789	+				+0.3
2,747,790	-				-1.7
2,747,820	+				-1.6
2,747,820	+				-1.5
2,747,821	-				+1.2
2,747,821	-				-0.4
2,747,821	-				+1.0
2,747,824	+				-0.5
2,747,824	+				+0.9
2,747,824	+				-0.5
2,747,824	+				-0.4
2,747,824	+				+1.0
2,747,824	+				-2.4
2,747,825	-				+2.0
2,747,825	-				-1.5
2,747,825	-				-0.2
2,747,825	-				+0.2
2,747,825	-				-0.6
2,747,829	+				+0.7
2,747,885	-				-0.1
2,747,885	-				+2.1
2,747,885	-				-1.4
2,747,885	-				+2.1
2,747,885	-				-0.5
2,747,885	-				+0.8
2,747,887	-				-1.4
2,747,887	-				-2.1
2,747,887	-				-1.5
2,747,887	-				+0.9
2,747,887	-				-1.7
2,748,194	+				-1.2
2,748,194	+				-0.0
2,748,194	+				-1.5
2,748,194	+				-1.2
2,748,194	+				-0.7
2,748,196	+				-1.8
2,748,272	-				+0.0
2,748,272	-				-1.4
2,748,327	+		DDA3937_RS12085	0.12	-2.1
2,748,327	+		DDA3937_RS12085	0.12	+2.3
2,748,327	+		DDA3937_RS12085	0.12	-0.8
2,748,327	+		DDA3937_RS12085	0.12	-2.4
2,748,327	+		DDA3937_RS12085	0.12	-2.0
2,748,327	+		DDA3937_RS12085	0.12	-1.5
2,748,328	-		DDA3937_RS12085	0.13	-1.6
2,748,328	-		DDA3937_RS12085	0.13	-2.7
2,748,328	-		DDA3937_RS12085	0.13	-1.2
2,748,411	+		DDA3937_RS12085	0.27	-2.4
2,748,412	-		DDA3937_RS12085	0.27	-0.1
2,748,464	-		DDA3937_RS12085	0.37	-1.5
2,748,551	+		DDA3937_RS12085	0.52	-2.6
2,748,552	-		DDA3937_RS12085	0.52	-2.8
2,748,595	+		DDA3937_RS12085	0.60	-1.4
2,748,616	+		DDA3937_RS12085	0.63	+0.0
2,748,616	+		DDA3937_RS12085	0.63	-1.0
2,748,617	-		DDA3937_RS12085	0.63	-0.6
2,748,677	-		DDA3937_RS12085	0.74	-1.0
2,748,739	+		DDA3937_RS12085	0.85	-2.4
2,748,739	+		DDA3937_RS12085	0.85	-1.9
2,748,740	-		DDA3937_RS12085	0.85	-3.6
2,748,755	-		DDA3937_RS12085	0.88	-0.8
2,748,840	-				+2.3
2,748,856	+				-0.2
2,748,856	+				+2.3
2,748,857	-				+1.6
2,748,859	+				+0.8
2,748,859	+				+1.0
2,748,859	+				-1.4
2,748,859	+				-0.5
2,748,859	+				-0.0
2,748,860	-				-0.1
2,748,860	-				+1.3
2,748,860	-				+1.1
2,748,871	-				+1.2
2,748,880	+				-0.2
2,748,881	-				-0.8
2,748,902	+				-2.8
2,748,903	-				-2.1
2,748,903	-				-0.8
2,748,903	-				+1.9
2,748,939	-				+1.5
2,748,945	+				+0.2
2,748,945	+				-2.5
2,748,948	-				-0.8
2,748,948	-				-1.4
2,748,948	-				-1.0
2,748,948	-				-0.2
2,748,977	-				+1.2
2,748,988	+				+1.4
2,749,007	+				+1.0
2,749,007	+				+1.0
2,749,008	-				-2.2
2,749,008	-				+1.4
2,749,039	+				-1.8
2,749,040	-				-1.1
2,749,041	+				-3.9
2,749,041	+				+0.2
2,749,041	+				+1.5
2,749,041	+				+0.3
2,749,041	+				-2.0
2,749,041	+				-1.2
2,749,041	+				+0.9
2,749,042	-				-1.0
2,749,042	-				+1.0
2,749,042	-				+1.1
2,749,042	-				-0.2
2,749,042	-				+0.1
2,749,042	-				-0.2
2,749,046	-				-0.8
2,749,046	-				-0.8
2,749,046	-				+1.0
2,749,093	+		DDA3937_RS12090	0.15	-1.9
2,749,101	+		DDA3937_RS12090	0.16	-2.0
2,749,101	+		DDA3937_RS12090	0.16	-1.8
2,749,101	+		DDA3937_RS12090	0.16	-1.0
2,749,102	-		DDA3937_RS12090	0.16	-1.4
2,749,102	-		DDA3937_RS12090	0.16	-2.3
2,749,102	-		DDA3937_RS12090	0.16	+1.0
2,749,102	-		DDA3937_RS12090	0.16	-1.0
2,749,102	-		DDA3937_RS12090	0.16	-0.8
2,749,102	-		DDA3937_RS12090	0.16	-0.4
2,749,105	+		DDA3937_RS12090	0.17	-1.7
2,749,105	+		DDA3937_RS12090	0.17	-0.8
2,749,105	+		DDA3937_RS12090	0.17	+0.2
2,749,105	+		DDA3937_RS12090	0.17	+0.1
2,749,105	+		DDA3937_RS12090	0.17	+0.1
2,749,105	+		DDA3937_RS12090	0.17	-2.0
2,749,106	-		DDA3937_RS12090	0.17	-1.3
2,749,106	-		DDA3937_RS12090	0.17	+0.5
2,749,106	-		DDA3937_RS12090	0.17	-1.2
2,749,106	-		DDA3937_RS12090	0.17	-1.2
2,749,106	-		DDA3937_RS12090	0.17	+1.2
2,749,106	-		DDA3937_RS12090	0.17	+1.0
2,749,106	-		DDA3937_RS12090	0.17	+0.9
2,749,106	-		DDA3937_RS12090	0.17	+0.5
2,749,106	-		DDA3937_RS12090	0.17	-0.0
2,749,106	-		DDA3937_RS12090	0.17	-0.2
2,749,106	-		DDA3937_RS12090	0.17	+0.4
2,749,106	-		DDA3937_RS12090	0.17	+0.4
2,749,106	-		DDA3937_RS12090	0.17	-0.2
2,749,106	-		DDA3937_RS12090	0.17	-0.2
2,749,106	-		DDA3937_RS12090	0.17	-0.5
2,749,163	-		DDA3937_RS12090	0.29	-1.0
2,749,163	-		DDA3937_RS12090	0.29	-1.5
2,749,163	-		DDA3937_RS12090	0.29	-0.9
2,749,195	-		DDA3937_RS12090	0.36	+0.9
2,749,298	-		DDA3937_RS12090	0.57	+0.2
2,749,499	+				+2.5
2,749,500	-				-1.8
2,749,503	+				-0.2
2,749,503	+				-1.0
2,749,504	-				+1.2
2,749,504	-				-0.2
2,749,504	-				+1.3
2,749,504	-				+1.5
2,749,526	+				+0.2
2,749,527	-				-0.8
2,749,538	-				+0.8
2,749,710	+		DDA3937_RS12095	0.31	+0.6
2,749,711	-		DDA3937_RS12095	0.31	-2.2
2,749,754	-		DDA3937_RS12095	0.39	+0.8
2,749,816	+		DDA3937_RS12095	0.50	-1.2
2,749,817	-		DDA3937_RS12095	0.50	+2.5