Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11610

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,640,904	+		DDA3937_RS11605	0.15	-1.6
2,640,945	+		DDA3937_RS11605	0.19	+1.4
2,640,946	-		DDA3937_RS11605	0.19	-2.3
2,641,051	+		DDA3937_RS11605	0.28	-0.5
2,641,133	-		DDA3937_RS11605	0.35	-1.4
2,641,133	-		DDA3937_RS11605	0.35	-1.2
2,641,159	+		DDA3937_RS11605	0.37	+0.4
2,641,160	-				+1.8
2,641,197	+		DDA3937_RS11605	0.40	+0.3
2,641,198	-		DDA3937_RS11605	0.41	-2.9
2,641,198	-		DDA3937_RS11605	0.41	-0.1
2,641,198	-		DDA3937_RS11605	0.41	-0.8
2,641,224	+		DDA3937_RS11605	0.43	-0.0
2,641,225	-		DDA3937_RS11605	0.43	-1.0
2,641,227	+		DDA3937_RS11605	0.43	-1.9
2,641,227	+		DDA3937_RS11605	0.43	+0.2
2,641,228	-		DDA3937_RS11605	0.43	+1.9
2,641,228	-		DDA3937_RS11605	0.43	-1.7
2,641,228	-		DDA3937_RS11605	0.43	-1.5
2,641,228	-		DDA3937_RS11605	0.43	-0.5
2,641,230	+		DDA3937_RS11605	0.43	-1.1
2,641,353	+		DDA3937_RS11605	0.54	+0.5
2,641,353	+		DDA3937_RS11605	0.54	-2.1
2,641,440	+		DDA3937_RS11605	0.61	-0.8
2,641,440	+		DDA3937_RS11605	0.61	-1.9
2,641,440	+		DDA3937_RS11605	0.61	-0.4
2,641,440	+		DDA3937_RS11605	0.61	+0.5
2,641,441	-		DDA3937_RS11605	0.61	+1.8
2,641,441	-		DDA3937_RS11605	0.61	-2.4
2,641,459	+		DDA3937_RS11605	0.63	-1.2
2,641,459	+		DDA3937_RS11605	0.63	-0.2
2,641,459	+		DDA3937_RS11605	0.63	+1.0
2,641,460	-		DDA3937_RS11605	0.63	+1.4
2,641,469	-		DDA3937_RS11605	0.64	-1.9
2,641,544	+		DDA3937_RS11605	0.70	+1.8
2,641,545	-				-0.5
2,641,600	+		DDA3937_RS11605	0.75	+2.2
2,641,600	+		DDA3937_RS11605	0.75	-2.1
2,641,600	+		DDA3937_RS11605	0.75	-0.8
2,641,601	-		DDA3937_RS11605	0.75	-1.9
2,641,601	-		DDA3937_RS11605	0.75	-1.0
2,641,601	-		DDA3937_RS11605	0.75	+0.1
2,641,601	-		DDA3937_RS11605	0.75	-1.8
2,641,681	+		DDA3937_RS11605	0.82	+0.1
2,641,682	-		DDA3937_RS11605	0.82	+0.4
2,641,682	-		DDA3937_RS11605	0.82	+0.2
2,641,682	-		DDA3937_RS11605	0.82	+3.1
2,641,795	-				-1.5
2,641,939	-				-0.2
2,641,971	+				+1.4
2,641,971	+				+0.8
2,641,972	-				-1.1
2,641,975	+				-2.4
2,642,028	+				-1.7
2,642,028	+				+0.9
2,642,133	+		DDA3937_RS11610	0.18	+0.2
2,642,133	+		DDA3937_RS11610	0.18	+0.8
2,642,133	+		DDA3937_RS11610	0.18	-1.7
2,642,133	+		DDA3937_RS11610	0.18	+0.5
2,642,134	-		DDA3937_RS11610	0.18	-1.7
2,642,134	-		DDA3937_RS11610	0.18	+0.1
2,642,134	-		DDA3937_RS11610	0.18	+1.3
2,642,134	-		DDA3937_RS11610	0.18	+1.2
2,642,138	-		DDA3937_RS11610	0.18	+0.1
2,642,166	+		DDA3937_RS11610	0.20	-2.0
2,642,166	+		DDA3937_RS11610	0.20	+1.1
2,642,166	+		DDA3937_RS11610	0.20	+1.0
2,642,175	+		DDA3937_RS11610	0.21	-2.2
2,642,175	+		DDA3937_RS11610	0.21	-0.8
2,642,176	-		DDA3937_RS11610	0.21	-1.0
2,642,176	-		DDA3937_RS11610	0.21	+0.6
2,642,182	+		DDA3937_RS11610	0.22	-0.1
2,642,182	+		DDA3937_RS11610	0.22	-0.9
2,642,182	+				+1.8
2,642,182	+		DDA3937_RS11610	0.22	-2.0
2,642,183	-		DDA3937_RS11610	0.22	-1.5
2,642,184	+		DDA3937_RS11610	0.22	+0.2
2,642,185	-		DDA3937_RS11610	0.22	-0.2
2,642,195	-		DDA3937_RS11610	0.23	-2.5
2,642,203	-		DDA3937_RS11610	0.23	-1.8
2,642,203	-		DDA3937_RS11610	0.23	-0.2
2,642,252	+		DDA3937_RS11610	0.27	-0.5
2,642,405	+		DDA3937_RS11610	0.39	-2.7
2,642,434	+		DDA3937_RS11610	0.41	-2.3
2,642,435	-		DDA3937_RS11610	0.41	+1.6
2,642,435	-		DDA3937_RS11610	0.41	+0.5
2,642,435	-		DDA3937_RS11610	0.41	+0.8
2,642,436	+		DDA3937_RS11610	0.41	+0.3
2,642,436	+		DDA3937_RS11610	0.41	+1.8
2,642,436	+				+0.2
2,642,436	+		DDA3937_RS11610	0.41	-1.7
2,642,436	+		DDA3937_RS11610	0.41	+0.2
2,642,436	+		DDA3937_RS11610	0.41	+1.8
2,642,436	+		DDA3937_RS11610	0.41	+1.7
2,642,436	+		DDA3937_RS11610	0.41	-1.5
2,642,436	+		DDA3937_RS11610	0.41	-1.7
2,642,436	+		DDA3937_RS11610	0.41	-1.2
2,642,436	+		DDA3937_RS11610	0.41	+2.8
2,642,437	-		DDA3937_RS11610	0.41	-2.8
2,642,437	-		DDA3937_RS11610	0.41	-0.7
2,642,437	-		DDA3937_RS11610	0.41	+0.7
2,642,437	-		DDA3937_RS11610	0.41	-0.3
2,642,437	-		DDA3937_RS11610	0.41	-1.4
2,642,524	-		DDA3937_RS11610	0.48	-1.0
2,642,524	-		DDA3937_RS11610	0.48	-0.8
2,642,576	+		DDA3937_RS11610	0.52	-1.4
2,642,576	+		DDA3937_RS11610	0.52	-0.4
2,642,577	-		DDA3937_RS11610	0.52	+0.5
2,642,627	+				+0.8
2,642,656	-		DDA3937_RS11610	0.58	-0.8
2,642,661	+		DDA3937_RS11610	0.58	+0.4
2,642,661	+		DDA3937_RS11610	0.58	+1.3
2,642,661	+		DDA3937_RS11610	0.58	-0.8
2,642,662	-		DDA3937_RS11610	0.58	-1.0
2,642,662	-		DDA3937_RS11610	0.58	-1.4
2,642,664	+		DDA3937_RS11610	0.58	-1.8
2,642,664	+		DDA3937_RS11610	0.58	-0.9
2,642,665	-		DDA3937_RS11610	0.58	-1.2
2,642,675	-		DDA3937_RS11610	0.59	-1.6
2,642,718	+		DDA3937_RS11610	0.62	-0.4
2,642,793	-		DDA3937_RS11610	0.68	-2.7
2,642,802	+		DDA3937_RS11610	0.69	-0.8
2,642,860	+		DDA3937_RS11610	0.73	-1.1
2,642,862	+		DDA3937_RS11610	0.73	-0.4
2,642,862	+		DDA3937_RS11610	0.73	+1.4
2,642,862	+		DDA3937_RS11610	0.73	+0.6
2,642,862	+		DDA3937_RS11610	0.73	-0.3
2,642,862	+		DDA3937_RS11610	0.73	-0.6
2,642,862	+		DDA3937_RS11610	0.73	+0.6
2,642,862	+		DDA3937_RS11610	0.73	+1.8
2,642,863	-		DDA3937_RS11610	0.73	+0.8
2,642,863	-		DDA3937_RS11610	0.73	-2.5
2,642,863	-		DDA3937_RS11610	0.73	-0.4
2,642,863	-		DDA3937_RS11610	0.73	-0.7
2,642,863	-		DDA3937_RS11610	0.73	-1.2
2,642,863	-		DDA3937_RS11610	0.73	-1.5
2,642,863	-		DDA3937_RS11610	0.73	+1.1
2,642,863	-		DDA3937_RS11610	0.73	-1.2
2,643,031	+		DDA3937_RS11610	0.86	+4.8
2,643,080	-				-0.4
2,643,080	-				-1.5
2,643,086	-				-1.2
2,643,110	-				+1.6
2,643,131	+				+0.5
2,643,132	-				-1.2
2,643,132	-				-3.2
2,643,132	-				+1.1
2,643,132	-				-2.0
2,643,146	+				+0.8
2,643,146	+				-1.7
2,643,262	-				-1.8
2,643,277	-				-0.5
2,643,291	+				-0.8
2,643,292	-				+0.6
2,643,296	+				-0.4
2,643,297	-				-1.0
2,643,336	+				-0.1
2,643,337	-				+1.0
2,643,337	-				-0.2
2,643,341	+				-1.4
2,643,341	+				-0.5
2,643,341	+				-0.6
2,643,342	-				-0.0
2,643,342	-				+1.4
2,643,342	-				-1.5
2,643,344	+				+0.7
2,643,345	-				-1.9
2,643,365	+				-1.0
2,643,365	+				-0.2
2,643,366	-				-0.2
2,643,368	-				+0.9
2,643,368	-				-1.2
2,643,385	+				-1.4
2,643,385	+				-0.0
2,643,385	+				+1.8
2,643,385	+				+1.6
2,643,385	+				-1.2
2,643,385	+				+1.1
2,643,385	+				-3.4
2,643,385	+				+0.8
2,643,386	-				-1.0
2,643,386	-				-0.7
2,643,386	-				-2.2
2,643,386	-				+0.2
2,643,386	-				+0.2
2,643,386	-				+2.1
2,643,386	-				-0.2
2,643,386	-				-0.5
2,643,386	-				-1.4
2,643,386	-				+0.4
2,643,386	-				-1.2
2,643,386	-				-0.5
2,643,386	-				-0.2
2,643,386	-				-0.2
2,643,386	-				-0.8
2,643,411	+				-2.2
2,643,412	-				+4.0
2,643,415	-				-0.2
2,643,439	+				-1.2
2,643,439	+				+0.4
2,643,439	+				+4.4
2,643,439	+				+0.2
2,643,440	-				+0.1
2,643,440	-				-0.2
2,643,440	-				-2.3
2,643,440	-				+1.1
2,643,485	-				-2.0
2,643,532	+				-0.2
2,643,533	-		DDA3937_RS11615	0.10	+0.6
2,643,533	-		DDA3937_RS11615	0.10	-3.2
2,643,669	-		DDA3937_RS11615	0.33	-0.8
2,643,847	+		DDA3937_RS11615	0.62	+0.6
2,643,847	+		DDA3937_RS11615	0.62	-0.2
2,644,054	+				-1.0
2,644,055	-				-1.2
2,644,074	+				+1.5
2,644,074	+				+1.2
2,644,074	+				+0.0
2,644,075	-				+0.7
2,644,075	-				-0.3
2,644,075	-				-0.2
2,644,075	-				-2.3
2,644,075	-				-0.4
2,644,075	-				-0.3
2,644,075	-				-0.5
2,644,075	-				+0.3
2,644,075	-				-2.2
2,644,075	-				-1.5
2,644,075	-				-1.3
2,644,075	-				-1.0
2,644,104	-				+1.4
2,644,104	-				+0.2
2,644,104	-				+0.1
2,644,112	+				+0.8
2,644,113	-				-1.1
2,644,113	-				+1.5
2,644,118	-				-0.8
2,644,146	+				+1.5