Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11500

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,610,733	+				-2.3
2,610,733	+				+3.3
2,610,734	-				-1.8
2,610,816	+				+0.8
2,610,817	-				+0.8
2,610,817	-				+0.9
2,610,817	-				-0.8
2,610,852	-				+0.2
2,610,852	-				-2.5
2,610,857	+				+0.2
2,610,857	+				-3.2
2,610,858	-				-1.0
2,610,858	-				+0.8
2,610,861	+				+3.1
2,610,861	+				-1.0
2,610,861	+				+0.4
2,610,862	-				-0.5
2,610,862	-				-2.1
2,610,862	-				-1.5
2,610,862	-				-0.1
2,610,862	-				-0.2
2,610,927	-				-2.2
2,610,942	+				-1.0
2,610,955	+				-1.0
2,610,956	-				-2.1
2,610,956	-				-3.2
2,610,970	-				+0.5
2,611,053	+				-0.8
2,611,053	+				-0.5
2,611,053	+				-1.0
2,611,053	+				+1.1
2,611,053	+				-1.8
2,611,054	-				-0.2
2,611,054	-				-0.3
2,611,088	+				-4.0
2,611,248	-		DDA3937_RS11500	0.33	-3.0
2,611,321	+		DDA3937_RS11500	0.43	-1.8
2,611,321	+		DDA3937_RS11500	0.43	-2.2
2,611,322	-		DDA3937_RS11500	0.44	-2.2
2,611,322	-		DDA3937_RS11500	0.44	-0.4
2,611,322	-		DDA3937_RS11500	0.44	+0.3
2,611,322	-		DDA3937_RS11500	0.44	-0.8
2,611,457	+		DDA3937_RS11500	0.64	+0.3
2,611,457	+		DDA3937_RS11500	0.64	+0.6
2,611,458	-		DDA3937_RS11500	0.64	-1.8
2,611,458	-		DDA3937_RS11500	0.64	-2.7
2,611,458	-		DDA3937_RS11500	0.64	+2.5
2,611,492	+		DDA3937_RS11500	0.69	-2.3
2,611,492	+		DDA3937_RS11500	0.69	-1.4
2,611,492	+		DDA3937_RS11500	0.69	-1.5
2,611,492	+		DDA3937_RS11500	0.69	-1.8
2,611,493	-		DDA3937_RS11500	0.69	-2.7
2,611,532	+		DDA3937_RS11500	0.75	-1.9
2,611,532	+		DDA3937_RS11500	0.75	-1.5
2,611,693	-				-2.7
2,611,696	+				+0.6
2,611,696	+				-0.7
2,611,696	+				-0.9
2,611,696	+				-1.5
2,611,696	+				-2.1
2,611,696	+				-2.0
2,611,696	+				-2.1
2,611,696	+				-2.8
2,611,696	+				+0.6
2,611,696	+				+0.9
2,611,697	-				-0.5
2,611,697	-				-2.5
2,611,697	-				-1.4
2,611,697	-				-1.9
2,611,697	-				-0.9
2,611,697	-				-0.4
2,611,697	-				-1.7
2,611,697	-				-0.4
2,611,697	-				-1.9
2,611,697	-				-0.2
2,611,697	-				+1.4
2,611,697	-				-2.0
2,611,697	-				-1.7
2,611,697	-				-1.8
2,611,697	-				-2.0
2,611,697	-				-0.3
2,611,697	-				-0.3
2,611,714	+				-1.0
2,611,714	+				-0.8
2,611,733	+				-0.1
2,611,733	+				-1.2
2,611,734	-				-2.3
2,611,734	-				-0.5
2,611,734	-				-2.6
2,611,813	+				-2.7
2,611,837	+				-0.2
2,611,898	-		DDA3937_RS11505	0.12	-0.3
2,611,898	-		DDA3937_RS11505	0.12	-3.2
2,611,964	-		DDA3937_RS11505	0.16	-1.9
2,611,964	-		DDA3937_RS11505	0.16	-1.5
2,611,964	-		DDA3937_RS11505	0.16	-1.5
2,611,980	+				+0.8
2,611,980	+		DDA3937_RS11505	0.18	-2.8
2,611,980	+		DDA3937_RS11505	0.18	-0.5
2,611,980	+		DDA3937_RS11505	0.18	-1.0
2,611,980	+		DDA3937_RS11505	0.18	-2.1
2,611,981	-		DDA3937_RS11505	0.18	-0.1
2,611,981	-		DDA3937_RS11505	0.18	-0.7
2,611,981	-		DDA3937_RS11505	0.18	-0.5
2,611,981	-		DDA3937_RS11505	0.18	+1.2
2,611,984	+		DDA3937_RS11505	0.18	-2.0
2,611,984	+		DDA3937_RS11505	0.18	+1.2
2,611,985	-		DDA3937_RS11505	0.18	-2.3
2,611,985	-		DDA3937_RS11505	0.18	+0.8
2,611,985	-		DDA3937_RS11505	0.18	-0.0
2,612,193	+		DDA3937_RS11505	0.32	-2.2
2,612,194	-		DDA3937_RS11505	0.32	+0.8
2,612,194	-		DDA3937_RS11505	0.32	-1.9
2,612,194	-		DDA3937_RS11505	0.32	-1.2
2,612,249	+		DDA3937_RS11505	0.36	-1.8
2,612,250	-		DDA3937_RS11505	0.36	-2.8
2,612,252	+		DDA3937_RS11505	0.36	-0.8
2,612,253	-		DDA3937_RS11505	0.36	-2.1
2,612,253	-		DDA3937_RS11505	0.36	-0.4
2,612,253	-		DDA3937_RS11505	0.36	-2.3
2,612,273	+		DDA3937_RS11505	0.38	-1.7
2,612,273	+		DDA3937_RS11505	0.38	-1.6
2,612,273	+		DDA3937_RS11505	0.38	-2.3
2,612,273	+		DDA3937_RS11505	0.38	-2.0
2,612,274	-		DDA3937_RS11505	0.38	-0.3
2,612,274	-		DDA3937_RS11505	0.38	+0.2
2,612,288	+		DDA3937_RS11505	0.39	-2.4
2,612,288	+		DDA3937_RS11505	0.39	+0.2
2,612,288	+		DDA3937_RS11505	0.39	-1.5
2,612,289	-		DDA3937_RS11505	0.39	-1.5
2,612,289	-		DDA3937_RS11505	0.39	+0.7
2,612,289	-		DDA3937_RS11505	0.39	-1.6
2,612,312	+		DDA3937_RS11505	0.40	-0.2
2,612,312	+		DDA3937_RS11505	0.40	-2.5
2,612,312	+		DDA3937_RS11505	0.40	-2.5
2,612,312	+		DDA3937_RS11505	0.40	-1.8
2,612,312	+		DDA3937_RS11505	0.40	-1.4
2,612,313	-		DDA3937_RS11505	0.40	-3.5
2,612,313	-		DDA3937_RS11505	0.40	-1.8
2,612,313	-		DDA3937_RS11505	0.40	-1.5
2,612,313	-		DDA3937_RS11505	0.40	-2.7
2,612,313	-		DDA3937_RS11505	0.40	-0.2
2,612,484	+		DDA3937_RS11505	0.52	-4.0
2,612,485	-		DDA3937_RS11505	0.52	-1.0
2,612,485	-		DDA3937_RS11505	0.52	-0.4
2,612,513	-		DDA3937_RS11505	0.54	-2.1
2,612,521	+		DDA3937_RS11505	0.55	-2.4
2,612,522	-		DDA3937_RS11505	0.55	-2.1
2,612,522	-		DDA3937_RS11505	0.55	-1.3
2,612,522	-				+0.2
2,612,522	-		DDA3937_RS11505	0.55	-0.2
2,612,529	+		DDA3937_RS11505	0.55	-1.0
2,612,641	-		DDA3937_RS11505	0.63	+1.5
2,612,683	+		DDA3937_RS11505	0.66	-0.8
2,612,683	+		DDA3937_RS11505	0.66	-1.6
2,612,683	+		DDA3937_RS11505	0.66	-1.0
2,612,683	+		DDA3937_RS11505	0.66	-2.4
2,612,684	-		DDA3937_RS11505	0.66	-1.5
2,612,684	-		DDA3937_RS11505	0.66	-1.8
2,612,684	-		DDA3937_RS11505	0.66	+1.8