Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11340

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,574,595	-				-0.2
2,574,595	-				+1.8
2,574,714	+		DDA3937_RS11335	0.25	-1.6
2,574,714	+		DDA3937_RS11335	0.25	-0.2
2,574,715	-		DDA3937_RS11335	0.26	-1.5
2,574,723	+		DDA3937_RS11335	0.27	+0.7
2,574,724	-		DDA3937_RS11335	0.27	-2.3
2,574,942	+		DDA3937_RS11335	0.55	-1.2
2,574,943	-		DDA3937_RS11335	0.56	+0.2
2,574,945	+		DDA3937_RS11335	0.56	+0.2
2,574,946	-		DDA3937_RS11335	0.56	-4.0
2,574,946	-		DDA3937_RS11335	0.56	-2.4
2,574,991	+		DDA3937_RS11335	0.62	-2.6
2,574,992	-		DDA3937_RS11335	0.62	-1.3
2,574,992	-		DDA3937_RS11335	0.62	-0.7
2,575,056	+		DDA3937_RS11335	0.70	-0.5
2,575,056	+		DDA3937_RS11335	0.70	-1.2
2,575,057	-		DDA3937_RS11335	0.70	-0.5
2,575,087	+		DDA3937_RS11335	0.74	-1.3
2,575,087	+		DDA3937_RS11335	0.74	-2.7
2,575,134	+		DDA3937_RS11335	0.81	-0.8
2,575,231	+				-0.3
2,575,232	-				-1.2
2,575,243	+				-2.3
2,575,244	-				-1.5
2,575,473	+				-0.9
2,575,474	-				-3.2
2,575,474	-				-0.5
2,575,474	-				+1.1
2,575,474	-				-0.2
2,575,498	-				+3.0
2,575,502	-				-0.3
2,575,617	-				-1.8
2,575,636	-				-1.3
2,575,648	+				-0.2
2,575,648	+				-0.5
2,575,649	-				+0.5
2,575,781	-		DDA3937_RS11340	0.15	+0.1
2,575,910	+		DDA3937_RS11340	0.23	-1.0
2,575,966	+		DDA3937_RS11340	0.26	-2.8
2,575,966	+		DDA3937_RS11340	0.26	+2.1
2,575,983	+		DDA3937_RS11340	0.27	+1.0
2,575,987	-		DDA3937_RS11340	0.27	-1.6
2,576,097	+		DDA3937_RS11340	0.34	-0.6
2,576,098	-		DDA3937_RS11340	0.34	-0.4
2,576,098	-		DDA3937_RS11340	0.34	-0.1
2,576,223	+		DDA3937_RS11340	0.42	-0.2
2,576,223	+		DDA3937_RS11340	0.42	+2.3
2,576,224	-		DDA3937_RS11340	0.42	+1.8
2,576,224	-		DDA3937_RS11340	0.42	-2.8
2,576,224	-		DDA3937_RS11340	0.42	+0.0
2,576,224	-		DDA3937_RS11340	0.42	-1.2
2,576,290	-		DDA3937_RS11340	0.46	+0.5
2,576,298	+		DDA3937_RS11340	0.46	-0.5
2,576,298	+		DDA3937_RS11340	0.46	-3.1
2,576,299	-		DDA3937_RS11340	0.46	-0.2
2,576,299	-		DDA3937_RS11340	0.46	+0.7
2,576,299	-				-0.2
2,576,345	+		DDA3937_RS11340	0.49	-1.1
2,576,345	+		DDA3937_RS11340	0.49	+0.7
2,576,345	+		DDA3937_RS11340	0.49	+0.5
2,576,346	-		DDA3937_RS11340	0.49	-0.6
2,576,346	-		DDA3937_RS11340	0.49	-0.8
2,576,346	-		DDA3937_RS11340	0.49	-0.5
2,576,586	+		DDA3937_RS11340	0.64	-3.7
2,576,587	-		DDA3937_RS11340	0.64	-2.8
2,576,587	-		DDA3937_RS11340	0.64	+1.0
2,576,592	+		DDA3937_RS11340	0.64	+0.1
2,576,599	-		DDA3937_RS11340	0.65	+0.4
2,576,606	+		DDA3937_RS11340	0.65	-0.8
2,576,616	-		DDA3937_RS11340	0.66	-1.4
2,576,658	+		DDA3937_RS11340	0.68	+0.3
2,576,659	-		DDA3937_RS11340	0.68	+0.4
2,576,659	-		DDA3937_RS11340	0.68	+0.2
2,576,679	+		DDA3937_RS11340	0.70	+0.4
2,576,731	-		DDA3937_RS11340	0.73	-0.5
2,576,731	-				+1.2
2,576,746	+		DDA3937_RS11340	0.74	-0.7
2,576,746	+		DDA3937_RS11340	0.74	+0.5
2,576,746	+		DDA3937_RS11340	0.74	-0.5
2,576,907	+		DDA3937_RS11340	0.84	-0.2
2,576,908	-		DDA3937_RS11340	0.84	-1.3
2,576,908	-		DDA3937_RS11340	0.84	+2.8
2,576,936	+		DDA3937_RS11340	0.85	-1.0
2,576,943	+		DDA3937_RS11340	0.86	-1.1
2,576,960	-				+2.4
2,576,965	+		DDA3937_RS11340	0.87	-3.1
2,576,986	-		DDA3937_RS11340	0.88	+0.4
2,576,986	-		DDA3937_RS11340	0.88	+1.4
2,576,986	-		DDA3937_RS11340	0.88	+1.4
2,576,986	-		DDA3937_RS11340	0.88	+0.2
2,577,048	-				-0.8
2,577,087	+				-0.8
2,577,087	+				-0.6
2,577,088	-				-0.8
2,577,133	-				+0.4
2,577,201	-				+0.8
2,577,206	+				-1.4
2,577,248	+				-1.5
2,577,249	-				-1.9
2,577,249	-				-1.5
2,577,249	-				-0.5
2,577,249	-				+0.2
2,577,249	-				-0.8
2,577,249	-				-0.8
2,577,249	-				+0.0
2,577,250	+				-0.5
2,577,260	+				+1.8
2,577,260	+				-0.2
2,577,262	+				-1.0
2,577,262	+				+0.7
2,577,262	+				-1.0
2,577,263	-				+2.0
2,577,263	-				-0.2
2,577,263	-				-1.8
2,577,264	+				-0.2
2,577,265	-				+0.1
2,577,265	-				-1.5
2,577,265	-				-0.2
2,577,267	+				-0.3
2,577,329	+		DDA3937_RS11345	0.12	+0.4
2,577,372	-		DDA3937_RS11345	0.17	-2.2
2,577,385	+		DDA3937_RS11345	0.19	-0.7
2,577,385	+		DDA3937_RS11345	0.19	-1.0
2,577,431	+		DDA3937_RS11345	0.24	-2.9
2,577,431	+		DDA3937_RS11345	0.24	-1.2
2,577,431	+		DDA3937_RS11345	0.24	-2.3
2,577,431	+		DDA3937_RS11345	0.24	+0.2
2,577,431	+		DDA3937_RS11345	0.24	-0.5
2,577,432	-		DDA3937_RS11345	0.24	-0.6
2,577,432	-		DDA3937_RS11345	0.24	+1.5
2,577,432	-		DDA3937_RS11345	0.24	+0.1
2,577,432	-		DDA3937_RS11345	0.24	-0.6
2,577,432	-		DDA3937_RS11345	0.24	-0.5
2,577,432	-		DDA3937_RS11345	0.24	-1.2
2,577,432	-		DDA3937_RS11345	0.24	+3.7
2,577,533	+		DDA3937_RS11345	0.35	-0.2
2,577,533	+		DDA3937_RS11345	0.35	+0.1
2,577,534	-		DDA3937_RS11345	0.35	-2.2
2,577,534	-		DDA3937_RS11345	0.35	-1.2
2,577,556	+		DDA3937_RS11345	0.38	+0.0
2,577,620	-		DDA3937_RS11345	0.45	-1.8
2,577,845	+		DDA3937_RS11345	0.70	+0.2
2,577,900	-		DDA3937_RS11345	0.77	-1.3
2,577,929	+		DDA3937_RS11345	0.80	+0.8
2,577,929	+		DDA3937_RS11345	0.80	+1.2
2,577,935	+				-0.2
2,577,935	+		DDA3937_RS11345	0.80	+1.3
2,577,935	+		DDA3937_RS11345	0.80	-1.2
2,577,935	+		DDA3937_RS11345	0.80	+1.0
2,577,935	+		DDA3937_RS11345	0.80	+0.2
2,577,935	+		DDA3937_RS11345	0.80	+0.6
2,577,936	-		DDA3937_RS11345	0.81	-0.8
2,577,936	-		DDA3937_RS11345	0.81	-0.2
2,577,936	-		DDA3937_RS11345	0.81	-0.0
2,577,936	-		DDA3937_RS11345	0.81	-0.5
2,577,950	+				+0.2
2,577,950	+		DDA3937_RS11345	0.82	-1.3
2,577,950	+		DDA3937_RS11345	0.82	-0.3
2,577,950	+		DDA3937_RS11345	0.82	-1.2
2,577,950	+		DDA3937_RS11345	0.82	-1.1
2,577,951	-		DDA3937_RS11345	0.82	-1.2
2,577,951	-		DDA3937_RS11345	0.82	-0.5
2,577,952	+		DDA3937_RS11345	0.82	+1.2
2,577,952	+		DDA3937_RS11345	0.82	-1.8
2,577,952	+		DDA3937_RS11345	0.82	-0.5
2,577,952	+		DDA3937_RS11345	0.82	-0.8
2,577,953	-		DDA3937_RS11345	0.82	+1.4
2,577,953	-		DDA3937_RS11345	0.82	+1.6
2,577,953	-		DDA3937_RS11345	0.82	+0.5
2,577,953	-		DDA3937_RS11345	0.82	-0.2
2,577,953	-		DDA3937_RS11345	0.82	-1.3
2,577,953	-		DDA3937_RS11345	0.82	-1.7
2,577,953	-		DDA3937_RS11345	0.82	-0.7
2,577,953	-		DDA3937_RS11345	0.82	-2.6
2,577,953	-		DDA3937_RS11345	0.82	-0.8
2,577,953	-		DDA3937_RS11345	0.82	+0.2
2,577,953	-		DDA3937_RS11345	0.82	-3.0
2,577,953	-		DDA3937_RS11345	0.82	+0.8
2,577,953	-		DDA3937_RS11345	0.82	-2.1
2,577,953	-		DDA3937_RS11345	0.82	+0.2
2,577,953	-		DDA3937_RS11345	0.82	+1.6
2,577,956	+		DDA3937_RS11345	0.83	-0.3
2,577,956	+		DDA3937_RS11345	0.83	-1.0
2,577,956	+		DDA3937_RS11345	0.83	+1.2
2,577,956	+		DDA3937_RS11345	0.83	-2.3
2,577,956	+		DDA3937_RS11345	0.83	-0.4
2,577,956	+		DDA3937_RS11345	0.83	-0.5
2,577,956	+		DDA3937_RS11345	0.83	+1.6
2,577,957	-		DDA3937_RS11345	0.83	-2.8
2,577,957	-		DDA3937_RS11345	0.83	-1.5
2,577,957	-		DDA3937_RS11345	0.83	-0.8
2,577,957	-		DDA3937_RS11345	0.83	-0.5
2,577,957	-		DDA3937_RS11345	0.83	-2.3
2,577,957	-		DDA3937_RS11345	0.83	-0.5
2,577,957	-		DDA3937_RS11345	0.83	-0.9
2,577,974	+		DDA3937_RS11345	0.85	+0.5
2,577,975	-		DDA3937_RS11345	0.85	+1.2
2,578,033	-				+0.2
2,578,064	+				+1.0
2,578,065	-				-1.0
2,578,076	+				-0.3
2,578,076	+				-0.8
2,578,077	-				-1.6
2,578,077	-				-0.5
2,578,077	-				+0.5
2,578,109	+				-0.5
2,578,110	-				+0.2
2,578,165	+				-2.6
2,578,165	+				-1.3
2,578,165	+				-1.0
2,578,165	+				-1.2
2,578,166	-				+0.6