Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10920

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,462,747	-		DDA3937_RS10915	0.32	+0.1
2,462,747	-		DDA3937_RS10915	0.32	-1.3
2,462,750	+		DDA3937_RS10915	0.32	-1.1
2,462,758	+		DDA3937_RS10915	0.33	-2.9
2,462,798	+				+0.3
2,462,798	+		DDA3937_RS10915	0.36	+0.3
2,462,798	+		DDA3937_RS10915	0.36	-0.5
2,462,798	+		DDA3937_RS10915	0.36	+0.1
2,462,798	+				+2.1
2,462,798	+		DDA3937_RS10915	0.36	-0.1
2,462,798	+		DDA3937_RS10915	0.36	-0.2
2,462,799	-		DDA3937_RS10915	0.36	-1.5
2,462,799	-		DDA3937_RS10915	0.36	-1.9
2,462,816	+		DDA3937_RS10915	0.38	-0.5
2,462,817	-		DDA3937_RS10915	0.38	+1.6
2,462,817	-		DDA3937_RS10915	0.38	-0.3
2,462,818	+		DDA3937_RS10915	0.38	-0.1
2,462,818	+		DDA3937_RS10915	0.38	+1.7
2,462,819	-		DDA3937_RS10915	0.38	-0.7
2,462,819	-		DDA3937_RS10915	0.38	+0.3
2,462,891	+		DDA3937_RS10915	0.43	-0.5
2,462,891	+		DDA3937_RS10915	0.43	+2.1
2,462,891	+		DDA3937_RS10915	0.43	-0.5
2,462,891	+		DDA3937_RS10915	0.43	-0.9
2,462,891	+		DDA3937_RS10915	0.43	-1.4
2,462,891	+		DDA3937_RS10915	0.43	+2.8
2,462,892	-		DDA3937_RS10915	0.44	+0.9
2,462,906	+		DDA3937_RS10915	0.45	+1.1
2,462,906	+		DDA3937_RS10915	0.45	-0.2
2,462,906	+		DDA3937_RS10915	0.45	-0.7
2,462,906	+		DDA3937_RS10915	0.45	+0.1
2,462,906	+		DDA3937_RS10915	0.45	-1.8
2,462,906	+		DDA3937_RS10915	0.45	-0.1
2,462,906	+		DDA3937_RS10915	0.45	+3.4
2,462,906	+		DDA3937_RS10915	0.45	+0.8
2,462,906	+		DDA3937_RS10915	0.45	+0.6
2,462,906	+		DDA3937_RS10915	0.45	+0.3
2,462,907	-		DDA3937_RS10915	0.45	-0.1
2,462,907	-		DDA3937_RS10915	0.45	+0.5
2,462,907	-		DDA3937_RS10915	0.45	-0.3
2,462,907	-		DDA3937_RS10915	0.45	-0.3
2,462,907	-		DDA3937_RS10915	0.45	+1.1
2,462,907	-		DDA3937_RS10915	0.45	+1.3
2,462,907	-		DDA3937_RS10915	0.45	-1.9
2,462,907	-		DDA3937_RS10915	0.45	-0.2
2,462,907	-		DDA3937_RS10915	0.45	-0.9
2,462,907	-		DDA3937_RS10915	0.45	-0.1
2,462,907	-		DDA3937_RS10915	0.45	-1.5
2,462,908	+		DDA3937_RS10915	0.45	-0.5
2,462,908	+		DDA3937_RS10915	0.45	-1.6
2,462,908	+		DDA3937_RS10915	0.45	-1.8
2,462,909	-		DDA3937_RS10915	0.45	-0.9
2,462,909	-		DDA3937_RS10915	0.45	-0.1
2,463,083	+		DDA3937_RS10915	0.58	-1.3
2,463,084	-		DDA3937_RS10915	0.59	+0.3
2,463,156	+		DDA3937_RS10915	0.64	-1.1
2,463,156	+		DDA3937_RS10915	0.64	+2.0
2,463,157	-				+0.3
2,463,158	+		DDA3937_RS10915	0.64	-2.3
2,463,158	+		DDA3937_RS10915	0.64	-2.1
2,463,158	+		DDA3937_RS10915	0.64	+0.3
2,463,159	-		DDA3937_RS10915	0.64	+1.3
2,463,159	-		DDA3937_RS10915	0.64	-0.3
2,463,338	-		DDA3937_RS10915	0.78	+0.3
2,463,338	-				-0.1
2,463,338	-		DDA3937_RS10915	0.78	-0.6
2,463,397	+		DDA3937_RS10915	0.83	+1.5
2,463,397	+		DDA3937_RS10915	0.83	-1.3
2,463,398	-		DDA3937_RS10915	0.83	-0.1
2,463,708	+				+1.7
2,463,709	-				+0.1
2,463,709	-				-1.7
2,463,709	-				-0.9
2,463,782	-				+1.3
2,463,970	+		DDA3937_RS10920	0.13	-2.0
2,463,970	+		DDA3937_RS10920	0.13	-0.1
2,463,970	+		DDA3937_RS10920	0.13	-2.6
2,463,970	+		DDA3937_RS10920	0.13	-2.4
2,463,970	+		DDA3937_RS10920	0.13	+0.5
2,464,001	+		DDA3937_RS10920	0.15	-1.3
2,464,085	-		DDA3937_RS10920	0.19	+1.5
2,464,211	+		DDA3937_RS10920	0.25	+1.2
2,464,211	+		DDA3937_RS10920	0.25	-1.1
2,464,211	+		DDA3937_RS10920	0.25	-0.1
2,464,212	-		DDA3937_RS10920	0.26	-1.2
2,464,212	-		DDA3937_RS10920	0.26	+1.9
2,464,212	-		DDA3937_RS10920	0.26	-1.5
2,464,291	+		DDA3937_RS10920	0.30	+0.9
2,464,327	+		DDA3937_RS10920	0.31	-0.7
2,464,327	+		DDA3937_RS10920	0.31	-0.2
2,464,328	-		DDA3937_RS10920	0.31	+0.6
2,464,328	-		DDA3937_RS10920	0.31	+1.1
2,464,369	+		DDA3937_RS10920	0.33	-1.8
2,464,369	+		DDA3937_RS10920	0.33	+0.3
2,464,369	+		DDA3937_RS10920	0.33	-1.1
2,464,537	+		DDA3937_RS10920	0.42	-0.1
2,464,597	-		DDA3937_RS10920	0.45	-2.1
2,464,842	-		DDA3937_RS10920	0.57	-0.9
2,464,855	+		DDA3937_RS10920	0.58	+1.5
2,464,855	+		DDA3937_RS10920	0.58	-0.9
2,464,855	+		DDA3937_RS10920	0.58	-0.4
2,464,858	+		DDA3937_RS10920	0.58	-1.5
2,464,858	+		DDA3937_RS10920	0.58	-1.1
2,464,859	-		DDA3937_RS10920	0.58	-2.5
2,464,859	-		DDA3937_RS10920	0.58	-0.5
2,464,859	-		DDA3937_RS10920	0.58	-1.5
2,464,859	-		DDA3937_RS10920	0.58	-2.2
2,464,859	-		DDA3937_RS10920	0.58	-1.9
2,464,859	-		DDA3937_RS10920	0.58	-0.4
2,464,868	-		DDA3937_RS10920	0.59	+1.3
2,464,868	-		DDA3937_RS10920	0.59	+1.1
2,464,915	+		DDA3937_RS10920	0.61	+0.4
2,464,916	-		DDA3937_RS10920	0.61	-1.1
2,464,961	-		DDA3937_RS10920	0.63	-0.6
2,464,973	-		DDA3937_RS10920	0.64	-0.0
2,464,973	-				+0.3
2,464,974	+		DDA3937_RS10920	0.64	-1.7
2,464,975	-		DDA3937_RS10920	0.64	-2.0
2,464,996	-		DDA3937_RS10920	0.65	+1.3
2,464,996	-		DDA3937_RS10920	0.65	+1.5
2,465,035	+		DDA3937_RS10920	0.67	+0.2
2,465,091	+				-0.1
2,465,111	-		DDA3937_RS10920	0.71	+0.2
2,465,169	+		DDA3937_RS10920	0.74	-0.4
2,465,332	-		DDA3937_RS10920	0.82	-1.5
2,465,373	+		DDA3937_RS10920	0.84	-1.5
2,465,374	-		DDA3937_RS10920	0.84	+1.1
2,465,374	-		DDA3937_RS10920	0.84	-1.4
2,465,437	+		DDA3937_RS10920	0.88	-1.1
2,465,462	-		DDA3937_RS10920	0.89	-0.7
2,465,471	-		DDA3937_RS10920	0.89	-0.5
2,465,471	-		DDA3937_RS10920	0.89	-2.7
2,465,471	-		DDA3937_RS10920	0.89	+0.9
2,465,472	+		DDA3937_RS10920	0.89	-0.7
2,465,472	+				-0.1
2,465,473	-				+0.9
2,465,473	-		DDA3937_RS10920	0.89	+0.3
2,465,473	-		DDA3937_RS10920	0.89	-1.5
2,465,509	+				+1.2
2,465,509	+				+1.2
2,465,542	+				-0.5
2,465,542	+				-1.3
2,465,542	+				-1.8
2,465,546	-				-0.6
2,465,547	+				-1.4
2,465,547	+				-0.9
2,465,548	-				-1.2
2,465,548	-				-1.6
2,465,548	-				-1.7
2,465,549	+				+0.9
2,465,549	+				+0.2
2,465,550	-				-1.3
2,465,550	-				-1.5
2,465,550	-				+0.9
2,465,599	+				-1.6
2,465,631	+				+0.3
2,465,631	+				-0.9
2,465,631	+				-0.7
2,465,631	+				+1.3
2,465,631	+				+2.1
2,465,631	+				+0.9
2,465,632	-				+3.4
2,465,632	-				+1.3
2,465,632	-				-0.4
2,465,632	-				-0.5
2,465,632	-				+1.4
2,465,651	+				-0.6
2,465,652	-				-1.1
2,465,664	+				-3.0
2,465,664	+				-0.9
2,465,665	-				-2.0
2,465,665	-				-0.9
2,465,731	+				-1.1
2,465,751	+				-0.4
2,465,752	-				-0.3
2,465,894	-				+3.3
2,465,894	-				+1.1
2,465,919	+				-1.7
2,465,960	-				-0.1
2,466,085	+		DDA3937_RS10925	0.29	+1.4
2,466,241	+		DDA3937_RS10925	0.57	+0.9
2,466,241	+		DDA3937_RS10925	0.57	-0.1
2,466,241	+		DDA3937_RS10925	0.57	-1.8
2,466,242	-		DDA3937_RS10925	0.57	+0.9
2,466,242	-		DDA3937_RS10925	0.57	-0.5
2,466,242	-		DDA3937_RS10925	0.57	+0.9
2,466,243	+		DDA3937_RS10925	0.57	-0.1
2,466,243	+		DDA3937_RS10925	0.57	+0.3
2,466,243	+		DDA3937_RS10925	0.57	-1.1
2,466,243	+		DDA3937_RS10925	0.57	-1.6
2,466,244	-		DDA3937_RS10925	0.57	-0.3
2,466,244	-		DDA3937_RS10925	0.57	-1.5
2,466,262	+		DDA3937_RS10925	0.60	-0.5
2,466,268	+		DDA3937_RS10925	0.61	-0.1
2,466,268	+		DDA3937_RS10925	0.61	-1.8
2,466,285	+		DDA3937_RS10925	0.64	-1.3
2,466,286	-		DDA3937_RS10925	0.65	+0.6
2,466,286	-		DDA3937_RS10925	0.65	-0.7
2,466,385	+		DDA3937_RS10925	0.82	-0.1
2,466,386	-		DDA3937_RS10925	0.82	+1.9
2,466,386	-		DDA3937_RS10925	0.82	+1.9
2,466,386	-		DDA3937_RS10925	0.82	-0.8
2,466,386	-				+0.9
2,466,386	-		DDA3937_RS10925	0.82	-0.5
2,466,440	-				-0.5
2,466,470	+				-1.9
2,466,471	-				+0.8
2,466,472	+				-1.5
2,466,473	-				+1.3
2,466,481	+				-1.3
2,466,482	-				+0.6
2,466,482	-				+0.3
2,466,505	+				-1.2
2,466,505	+				-2.0
2,466,505	+				-0.7
2,466,506	-				+0.5
2,466,506	-				+0.1
2,466,506	-				-0.4
2,466,549	+				-0.3
2,466,549	+				-0.3
2,466,549	+				+0.4
2,466,549	+				+1.9
2,466,549	+				-1.4
2,466,549	+				+0.5
2,466,549	+				-2.7
2,466,550	-				-2.5
2,466,550	-				-0.5
2,466,550	-				-1.8
2,466,550	-				+0.3
2,466,550	-				+0.3
2,466,550	-				-2.1
2,466,550	-				-0.5
2,466,550	-				-0.5
2,466,550	-				-1.0
2,466,550	-				+1.0
2,466,550	-				+1.9
2,466,550	-				-0.8
2,466,550	-				-0.4
2,466,550	-				-0.1
2,466,551	+				-0.7
2,466,551	+				-1.5
2,466,552	-				+0.3
2,466,554	-				-1.1
2,466,581	-				-2.3