Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10830

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,438,011	-		DDA3937_RS10820	0.84	-0.7
2,438,029	+		DDA3937_RS10820	0.85	-0.7
2,438,041	-		DDA3937_RS10820	0.86	+1.1
2,438,141	+				-0.5
2,438,141	+				-1.9
2,438,141	+				+2.2
2,438,141	+				+1.0
2,438,141	+				-0.9
2,438,142	-				-0.9
2,438,142	-				+0.2
2,438,154	+				+3.2
2,438,154	+				-0.3
2,438,154	+				-1.3
2,438,154	+				+1.3
2,438,154	+				-1.8
2,438,154	+				-0.4
2,438,155	-				+1.9
2,438,155	-				-0.8
2,438,155	-				-1.8
2,438,155	-				+0.9
2,438,155	-				-0.9
2,438,155	-				-1.1
2,438,155	-				-1.9
2,438,155	-				+1.2
2,438,155	-				-1.3
2,438,155	-				+1.9
2,438,155	-				-0.1
2,438,156	+				-1.3
2,438,156	+				+0.6
2,438,156	+				-0.3
2,438,156	+				-1.7
2,438,156	+				-1.7
2,438,156	+				+0.9
2,438,156	+				+1.0
2,438,156	+				-1.0
2,438,156	+				-0.2
2,438,156	+				+0.3
2,438,156	+				+0.9
2,438,156	+				-1.1
2,438,156	+				+0.7
2,438,156	+				+1.9
2,438,157	-				-1.8
2,438,157	-				-0.1
2,438,157	-				-0.1
2,438,157	-				-0.4
2,438,157	-				-1.7
2,438,157	-				-1.3
2,438,157	-				+0.4
2,438,157	-				+2.3
2,438,157	-				-0.1
2,438,157	-				-1.8
2,438,158	+				-1.8
2,438,158	+				-0.7
2,438,158	+				-1.8
2,438,159	-				-0.9
2,438,159	-				-1.0
2,438,159	-				-2.9
2,438,159	-				-0.7
2,438,299	-				-0.7
2,438,341	+		DDA3937_RS10825	0.12	-0.6
2,438,341	+		DDA3937_RS10825	0.12	+0.3
2,438,341	+		DDA3937_RS10825	0.12	-0.7
2,438,341	+		DDA3937_RS10825	0.12	+2.5
2,438,341	+		DDA3937_RS10825	0.12	-0.7
2,438,341	+		DDA3937_RS10825	0.12	+1.3
2,438,341	+		DDA3937_RS10825	0.12	-1.1
2,438,341	+		DDA3937_RS10825	0.12	+0.3
2,438,341	+		DDA3937_RS10825	0.12	-1.2
2,438,341	+		DDA3937_RS10825	0.12	+0.5
2,438,341	+		DDA3937_RS10825	0.12	-0.1
2,438,341	+		DDA3937_RS10825	0.12	-1.3
2,438,342	-		DDA3937_RS10825	0.12	+0.9
2,438,342	-		DDA3937_RS10825	0.12	+2.7
2,438,342	-		DDA3937_RS10825	0.12	+0.3
2,438,608	+		DDA3937_RS10825	0.86	+2.1
2,438,608	+		DDA3937_RS10825	0.86	-1.6
2,438,608	+		DDA3937_RS10825	0.86	-0.7
2,438,608	+		DDA3937_RS10825	0.86	-1.1
2,438,609	-		DDA3937_RS10825	0.86	+0.9
2,438,609	-		DDA3937_RS10825	0.86	-0.1
2,438,633	+				+1.2
2,438,633	+				-1.7
2,438,633	+				-2.3
2,438,644	+				+1.9
2,438,644	+				-0.9
2,438,647	+				-0.6
2,438,662	+				-1.1
2,438,695	+				+0.3
2,438,696	-				+1.1
2,438,696	-				-1.3
2,438,698	+				+0.0
2,438,698	+				-0.4
2,438,720	+				-0.3
2,438,720	+				+0.3
2,438,721	-				-1.3
2,438,721	-				-0.1
2,438,721	-				-0.9
2,438,721	-				-0.1
2,438,721	-				-2.6
2,438,738	+				-0.0
2,438,739	-				-0.4
2,438,740	+				+0.3
2,438,740	+				+0.5
2,438,901	-				+0.9
2,438,922	-				+0.9
2,439,120	-		DDA3937_RS10830	0.22	+0.5
2,439,139	+				+1.9
2,439,140	-		DDA3937_RS10830	0.23	-0.7
2,439,170	+		DDA3937_RS10830	0.25	-1.9
2,439,176	+		DDA3937_RS10830	0.25	+3.1
2,439,177	-		DDA3937_RS10830	0.26	+0.3
2,439,296	+		DDA3937_RS10830	0.34	-0.2
2,439,305	+		DDA3937_RS10830	0.34	-1.7
2,439,308	+		DDA3937_RS10830	0.35	-2.8
2,439,309	-		DDA3937_RS10830	0.35	+0.0
2,439,345	-		DDA3937_RS10830	0.37	-0.4
2,439,345	-		DDA3937_RS10830	0.37	-2.5
2,439,406	+		DDA3937_RS10830	0.41	+1.2
2,439,406	+		DDA3937_RS10830	0.41	-0.9
2,439,407	-		DDA3937_RS10830	0.42	+1.6
2,439,442	-		DDA3937_RS10830	0.44	-1.4
2,439,442	-		DDA3937_RS10830	0.44	-1.9
2,439,467	+		DDA3937_RS10830	0.46	+1.3
2,439,479	-		DDA3937_RS10830	0.47	+0.9
2,439,479	-		DDA3937_RS10830	0.47	-0.9
2,439,500	+		DDA3937_RS10830	0.48	+0.3
2,439,501	-		DDA3937_RS10830	0.48	-0.4
2,439,501	-		DDA3937_RS10830	0.48	-0.0
2,439,529	+		DDA3937_RS10830	0.50	+0.3
2,439,529	+		DDA3937_RS10830	0.50	-1.7
2,439,575	+		DDA3937_RS10830	0.53	-3.1
2,439,575	+		DDA3937_RS10830	0.53	-0.4
2,439,578	+		DDA3937_RS10830	0.53	-1.3
2,439,604	+		DDA3937_RS10830	0.55	-2.3
2,439,617	+		DDA3937_RS10830	0.56	-1.1
2,439,617	+		DDA3937_RS10830	0.56	+0.9
2,439,618	-		DDA3937_RS10830	0.56	-0.6
2,439,646	+		DDA3937_RS10830	0.58	-0.7
2,439,661	+		DDA3937_RS10830	0.59	-0.0
2,439,662	-		DDA3937_RS10830	0.59	-0.4
2,439,698	+		DDA3937_RS10830	0.62	-1.1
2,439,698	+		DDA3937_RS10830	0.62	-0.3
2,439,698	+		DDA3937_RS10830	0.62	-2.6
2,439,698	+		DDA3937_RS10830	0.62	-1.1
2,439,699	-		DDA3937_RS10830	0.62	+0.7
2,439,746	+				+0.3
2,439,748	+		DDA3937_RS10830	0.65	+1.3
2,439,748	+		DDA3937_RS10830	0.65	-0.7
2,439,837	+		DDA3937_RS10830	0.72	-1.3
2,439,842	+		DDA3937_RS10830	0.72	-0.9
2,439,842	+		DDA3937_RS10830	0.72	-1.1
2,439,842	+		DDA3937_RS10830	0.72	-0.1
2,439,842	+		DDA3937_RS10830	0.72	+0.3
2,439,842	+		DDA3937_RS10830	0.72	-0.5
2,439,842	+		DDA3937_RS10830	0.72	-1.1
2,439,842	+		DDA3937_RS10830	0.72	-0.1
2,439,843	-		DDA3937_RS10830	0.72	+1.8
2,439,843	-		DDA3937_RS10830	0.72	+0.3
2,439,843	-		DDA3937_RS10830	0.72	+0.9
2,439,843	-		DDA3937_RS10830	0.72	+1.7
2,439,843	-		DDA3937_RS10830	0.72	-1.8
2,439,843	-		DDA3937_RS10830	0.72	-0.0
2,439,844	+		DDA3937_RS10830	0.72	-0.4
2,439,844	+		DDA3937_RS10830	0.72	-0.4
2,439,882	-		DDA3937_RS10830	0.75	-1.4
2,439,882	-		DDA3937_RS10830	0.75	+0.8
2,439,882	-		DDA3937_RS10830	0.75	+0.2
2,439,960	-		DDA3937_RS10830	0.80	-0.4
2,439,984	-		DDA3937_RS10830	0.82	-1.8
2,440,070	+		DDA3937_RS10830	0.88	-1.4
2,440,070	+		DDA3937_RS10830	0.88	-2.9
2,440,070	+		DDA3937_RS10830	0.88	-0.4
2,440,071	-				+0.9
2,440,073	+				+0.7
2,440,074	-		DDA3937_RS10830	0.88	-0.4
2,440,112	+				-2.0
2,440,112	+				-1.6
2,440,112	+				-1.9
2,440,112	+				-2.1
2,440,112	+				-1.1
2,440,112	+				-0.1
2,440,113	-				-0.4
2,440,113	-				-0.7
2,440,113	-				-1.3
2,440,113	-				-1.3
2,440,113	-				-0.4
2,440,113	-				+2.9
2,440,114	+				-0.1
2,440,157	-				-0.7
2,440,171	+				-1.7
2,440,172	-				-0.5
2,440,192	+				-0.6
2,440,234	+				+2.9
2,440,236	+				+1.5
2,440,236	+				-0.4
2,440,237	-				-1.0
2,440,237	-				-0.3
2,440,237	-				-0.5
2,440,237	-				+1.4
2,440,237	-				-0.7
2,440,244	+				-2.0
2,440,271	+				-2.2
2,440,271	+				-1.7
2,440,280	-				+0.5
2,440,282	+				-0.9
2,440,282	+				-0.7
2,440,283	-				-0.3
2,440,298	+				-0.7
2,440,298	+				-1.7
2,440,299	-				+0.5
2,440,299	-				-0.4
2,440,299	-				-1.1
2,440,331	-				+0.5
2,440,347	-				-0.7
2,440,347	-				+0.9
2,440,376	-				-0.9
2,440,435	+				+2.1
2,440,449	+				+0.9
2,440,485	+				-3.0
2,440,488	+				-2.4
2,440,588	-				+0.1
2,440,591	+				-3.5
2,440,592	-				-2.0
2,440,646	+				-0.4
2,440,646	+				+0.9
2,440,690	-				-0.9
2,440,690	-				+3.5
2,440,690	-				-0.0
2,440,690	-				-1.8
2,440,740	+		DDA3937_RS10835	0.15	+0.0
2,440,809	+		DDA3937_RS10835	0.23	-0.1
2,440,810	-		DDA3937_RS10835	0.23	-1.0
2,440,810	-		DDA3937_RS10835	0.23	+0.6
2,440,810	-				+1.9
2,440,811	+		DDA3937_RS10835	0.24	+1.4
2,440,811	+		DDA3937_RS10835	0.24	-2.2
2,440,811	+		DDA3937_RS10835	0.24	-1.6
2,440,811	+		DDA3937_RS10835	0.24	+1.4
2,440,811	+		DDA3937_RS10835	0.24	-1.9
2,440,811	+		DDA3937_RS10835	0.24	-1.8
2,440,812	-		DDA3937_RS10835	0.24	-0.7
2,440,812	-		DDA3937_RS10835	0.24	+0.6
2,440,812	-		DDA3937_RS10835	0.24	+0.3
2,440,812	-		DDA3937_RS10835	0.24	-0.3
2,440,812	-		DDA3937_RS10835	0.24	-1.0
2,440,852	-		DDA3937_RS10835	0.28	-1.1
2,440,869	-		DDA3937_RS10835	0.30	-0.0
2,440,869	-		DDA3937_RS10835	0.30	-2.4
2,440,892	+		DDA3937_RS10835	0.33	-0.7
2,441,036	+		DDA3937_RS10835	0.50	+1.7
2,441,036	+		DDA3937_RS10835	0.50	-0.9
2,441,049	-		DDA3937_RS10835	0.51	+1.3
2,441,163	+		DDA3937_RS10835	0.65	+1.9
2,441,165	+		DDA3937_RS10835	0.65	-0.4
2,441,165	+		DDA3937_RS10835	0.65	-1.6
2,441,166	-		DDA3937_RS10835	0.65	-1.1
2,441,206	+		DDA3937_RS10835	0.70	-1.2