Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10735

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,414,228	-				-1.3
2,414,249	+				-1.1
2,414,277	+				-0.5
2,414,297	+				-0.2
2,414,301	-				+1.7
2,414,341	-				-0.4
2,414,342	+				-0.1
2,414,409	+				+0.0
2,414,411	+				-1.1
2,414,415	+				-0.8
2,414,415	+				-2.5
2,414,467	+				-1.1
2,414,484	+				-0.9
2,414,488	+				-1.1
2,414,488	+				-0.7
2,414,598	+				-0.1
2,414,598	+				-0.6
2,414,598	+				+0.5
2,414,599	-				+1.3
2,414,599	-				-1.6
2,414,665	+				+1.9
2,414,665	+				+0.3
2,414,666	-				+1.5
2,414,666	-				-1.4
2,414,687	+		DDA3937_RS10730	0.10	-1.0
2,414,687	+		DDA3937_RS10730	0.10	-0.1
2,414,688	-		DDA3937_RS10730	0.11	-1.4
2,414,688	-		DDA3937_RS10730	0.11	-2.3
2,414,741	+		DDA3937_RS10730	0.31	-1.7
2,414,741	+		DDA3937_RS10730	0.31	-1.1
2,414,741	+		DDA3937_RS10730	0.31	+1.2
2,414,741	+		DDA3937_RS10730	0.31	-1.1
2,414,742	-		DDA3937_RS10730	0.31	-0.3
2,414,742	-		DDA3937_RS10730	0.31	-0.4
2,414,742	-		DDA3937_RS10730	0.31	-0.2
2,414,742	-		DDA3937_RS10730	0.31	+0.2
2,414,742	-		DDA3937_RS10730	0.31	-1.1
2,414,742	-		DDA3937_RS10730	0.31	-2.4
2,414,742	-		DDA3937_RS10730	0.31	-2.1
2,414,742	-		DDA3937_RS10730	0.31	-0.4
2,414,742	-		DDA3937_RS10730	0.31	-0.9
2,414,742	-		DDA3937_RS10730	0.31	+0.6
2,414,743	+		DDA3937_RS10730	0.32	+0.2
2,414,743	+		DDA3937_RS10730	0.32	-0.1
2,414,743	+		DDA3937_RS10730	0.32	-1.8
2,414,743	+		DDA3937_RS10730	0.32	-2.2
2,414,743	+		DDA3937_RS10730	0.32	-1.3
2,414,743	+		DDA3937_RS10730	0.32	-3.3
2,414,743	+		DDA3937_RS10730	0.32	-3.1
2,414,744	-		DDA3937_RS10730	0.32	-1.9
2,414,744	-		DDA3937_RS10730	0.32	-1.1
2,414,744	-		DDA3937_RS10730	0.32	-0.3
2,414,744	-		DDA3937_RS10730	0.32	+1.2
2,414,744	-		DDA3937_RS10730	0.32	-0.9
2,414,744	-		DDA3937_RS10730	0.32	+1.2
2,414,744	-		DDA3937_RS10730	0.32	-0.4
2,414,744	-		DDA3937_RS10730	0.32	+0.9
2,414,818	+		DDA3937_RS10730	0.61	-1.5
2,414,818	+		DDA3937_RS10730	0.61	-2.5
2,414,818	+		DDA3937_RS10730	0.61	-1.5
2,414,818	+		DDA3937_RS10730	0.61	-0.5
2,414,819	-		DDA3937_RS10730	0.61	-2.1
2,414,819	-		DDA3937_RS10730	0.61	-0.1
2,414,819	-		DDA3937_RS10730	0.61	+1.3
2,414,885	+		DDA3937_RS10730	0.86	-2.2
2,414,886	-		DDA3937_RS10730	0.87	+0.2
2,414,886	-		DDA3937_RS10730	0.87	-0.6
2,415,044	+				-0.7
2,415,044	+				-1.3
2,415,059	-				-0.9
2,415,062	+				-0.1
2,415,062	+				+0.2
2,415,062	+				-2.4
2,415,062	+				-1.6
2,415,062	+				-2.4
2,415,062	+				-1.4
2,415,062	+				-0.7
2,415,062	+				+0.9
2,415,063	-				-1.5
2,415,063	-				+0.3
2,415,063	-				-1.0
2,415,063	-				+2.2
2,415,063	-				+0.2
2,415,063	-				-0.7
2,415,063	-				-1.7
2,415,063	-				-2.0
2,415,063	-				+0.3
2,415,063	-				-0.3
2,415,063	-				-0.1
2,415,063	-				+1.8
2,415,064	+				-1.1
2,415,064	+				+0.3
2,415,065	-				+1.3
2,415,065	-				-0.7
2,415,065	-				+0.2
2,415,070	+				-0.1
2,415,071	-				+1.0
2,415,071	-				-0.1
2,415,071	-				-0.7
2,415,072	+				-2.5
2,415,123	+				-2.0
2,415,123	+				-0.4
2,415,123	+				+0.2
2,415,124	-				-2.2
2,415,124	-				-1.2
2,415,165	-				+1.4
2,415,216	+				+0.3
2,415,216	+				+0.6
2,415,348	-		DDA3937_RS10735	0.15	+0.0
2,415,348	-		DDA3937_RS10735	0.15	-2.0
2,415,348	-		DDA3937_RS10735	0.15	-0.9
2,415,377	+		DDA3937_RS10735	0.18	-2.1
2,415,377	+		DDA3937_RS10735	0.18	-1.9
2,415,378	-		DDA3937_RS10735	0.19	-1.5
2,415,378	-		DDA3937_RS10735	0.19	+1.5
2,415,550	+		DDA3937_RS10735	0.36	-0.7
2,415,575	+		DDA3937_RS10735	0.39	-1.8
2,415,619	+		DDA3937_RS10735	0.44	-2.4
2,415,619	+		DDA3937_RS10735	0.44	-0.7
2,415,619	+		DDA3937_RS10735	0.44	-1.1
2,415,620	-		DDA3937_RS10735	0.44	-0.1
2,415,726	+		DDA3937_RS10735	0.55	-0.9
2,415,881	+		DDA3937_RS10735	0.71	-2.9
2,415,882	-		DDA3937_RS10735	0.71	-2.4
2,415,882	-		DDA3937_RS10735	0.71	-1.7
2,415,903	-		DDA3937_RS10735	0.73	-1.1
2,415,903	-		DDA3937_RS10735	0.73	-0.7
2,415,916	-		DDA3937_RS10735	0.74	-3.0
2,415,920	+		DDA3937_RS10735	0.75	-0.7
2,415,937	+		DDA3937_RS10735	0.77	-1.2
2,415,938	-		DDA3937_RS10735	0.77	-0.8
2,415,954	+		DDA3937_RS10735	0.78	-0.6
2,416,043	+		DDA3937_RS10735	0.88	-1.9
2,416,045	+		DDA3937_RS10735	0.88	-0.1
2,416,045	+		DDA3937_RS10735	0.88	-0.7
2,416,046	-		DDA3937_RS10735	0.88	-0.3
2,416,065	-				-1.4
2,416,068	+				+1.0
2,416,068	+				+0.9
2,416,098	+				+0.1
2,416,098	+				+0.9
2,416,098	+				-1.3
2,416,099	-				+0.3
2,416,136	+				+0.9
2,416,210	+				+0.6
2,416,211	-				+0.9
2,416,276	-				-0.9
2,416,345	-				-2.0
2,416,356	-				+2.9
2,416,367	-				+0.9
2,416,367	-		DDA3937_RS10740	0.12	+0.5
2,416,394	+		DDA3937_RS10740	0.17	-0.1
2,416,394	+		DDA3937_RS10740	0.17	-0.7
2,416,394	+		DDA3937_RS10740	0.17	-3.6
2,416,394	+		DDA3937_RS10740	0.17	-0.7
2,416,395	-		DDA3937_RS10740	0.17	-1.1
2,416,395	-		DDA3937_RS10740	0.17	-0.1
2,416,417	+		DDA3937_RS10740	0.22	+0.1
2,416,632	+		DDA3937_RS10740	0.63	-0.1
2,416,753	+		DDA3937_RS10740	0.86	-2.8
2,416,845	-				-1.0
2,416,907	+				+0.9
2,416,910	+				-1.4
2,416,911	-				-1.7
2,416,978	+				+1.5
2,417,064	-				+1.7
2,417,085	-				+1.3