Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09755

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,201,678	-		DDA3937_RS09750	0.68	+1.3
2,201,678	-		DDA3937_RS09750	0.68	-0.1
2,201,752	+		DDA3937_RS09750	0.72	-0.1
2,201,782	+		DDA3937_RS09750	0.74	+1.2
2,201,783	-				-0.1
2,201,783	-		DDA3937_RS09750	0.74	-2.1
2,201,783	-		DDA3937_RS09750	0.74	-2.8
2,201,806	+				+0.9
2,201,806	+		DDA3937_RS09750	0.75	+1.9
2,201,807	-		DDA3937_RS09750	0.75	-2.5
2,201,883	+		DDA3937_RS09750	0.79	+0.7
2,201,884	-		DDA3937_RS09750	0.79	-0.2
2,201,980	+		DDA3937_RS09750	0.84	-0.4
2,201,981	-		DDA3937_RS09750	0.84	-0.7
2,201,981	-		DDA3937_RS09750	0.84	+1.3
2,201,981	-		DDA3937_RS09750	0.84	+3.2
2,202,088	+				+1.9
2,202,089	-		DDA3937_RS09750	0.89	-0.1
2,202,089	-				-0.4
2,202,089	-		DDA3937_RS09750	0.89	+0.3
2,202,089	-		DDA3937_RS09750	0.89	+0.1
2,202,089	-		DDA3937_RS09750	0.89	+0.3
2,202,094	+		DDA3937_RS09750	0.90	-1.1
2,202,094	+		DDA3937_RS09750	0.90	-1.4
2,202,095	-		DDA3937_RS09750	0.90	+1.3
2,202,142	+				-1.5
2,202,142	+				-0.7
2,202,163	+				-0.8
2,202,163	+				-2.0
2,202,164	-				-0.7
2,202,164	-				-1.4
2,202,164	-				+0.9
2,202,189	+				-0.1
2,202,190	-				+0.9
2,202,231	+				-0.9
2,202,231	+				-0.4
2,202,232	-				-0.7
2,202,302	+				-0.4
2,202,302	+				-0.2
2,202,303	-				-1.8
2,202,315	-				-1.2
2,202,315	-				+2.1
2,202,315	-				-1.4
2,202,319	+				-1.7
2,202,333	+				+0.8
2,202,367	+				-1.6
2,202,368	-				-1.8
2,202,368	-				+1.7
2,202,395	+				-1.2
2,202,395	+				-0.8
2,202,396	-				+0.1
2,202,416	-				-2.1
2,202,426	-				-0.4
2,202,431	+				-0.7
2,202,431	+				-1.8
2,202,432	-				-1.1
2,202,432	-				-2.1
2,202,435	+				-0.1
2,202,435	+				-0.0
2,202,435	+				-2.0
2,202,436	-				-1.2
2,202,436	-				-0.9
2,202,436	-				-0.4
2,202,497	+				-1.2
2,202,497	+				+2.0
2,202,497	+				-1.8
2,202,498	-				+1.9
2,202,498	-				+0.6
2,202,535	+				-0.4
2,202,535	+				-1.5
2,202,536	-				+1.6
2,202,536	-				-0.1
2,202,593	-				+2.3
2,202,643	-				+0.8
2,202,683	+				-2.5
2,202,683	+				+0.1
2,202,683	+				+0.1
2,202,683	+				-1.1
2,202,684	-				+0.8
2,202,684	-				-2.5
2,202,684	-				+0.3
2,202,720	+		DDA3937_RS09755	0.14	+0.3
2,202,720	+		DDA3937_RS09755	0.14	-1.8
2,202,721	-		DDA3937_RS09755	0.14	-1.6
2,202,770	+		DDA3937_RS09755	0.21	+2.3
2,202,770	+		DDA3937_RS09755	0.21	-1.4
2,202,770	+		DDA3937_RS09755	0.21	+0.1
2,202,868	+		DDA3937_RS09755	0.34	-0.9
2,202,890	+		DDA3937_RS09755	0.37	-2.1
2,202,891	-		DDA3937_RS09755	0.37	+0.5
2,202,891	-		DDA3937_RS09755	0.37	-1.9
2,202,921	+		DDA3937_RS09755	0.41	-0.5
2,202,922	-		DDA3937_RS09755	0.42	-0.7
2,202,922	-		DDA3937_RS09755	0.42	-2.3
2,202,925	+		DDA3937_RS09755	0.42	+2.2
2,202,925	+		DDA3937_RS09755	0.42	+2.4
2,202,926	-		DDA3937_RS09755	0.42	-0.9
2,202,926	-		DDA3937_RS09755	0.42	-2.1
2,202,926	-		DDA3937_RS09755	0.42	-0.6
2,202,926	-		DDA3937_RS09755	0.42	-3.4
2,202,982	-		DDA3937_RS09755	0.50	-0.9
2,203,002	+		DDA3937_RS09755	0.53	-1.1
2,203,003	-		DDA3937_RS09755	0.53	-1.9
2,203,003	-		DDA3937_RS09755	0.53	+0.9
2,203,039	+		DDA3937_RS09755	0.58	+0.1
2,203,039	+				+2.5
2,203,039	+		DDA3937_RS09755	0.58	-2.0
2,203,039	+		DDA3937_RS09755	0.58	+0.9
2,203,039	+		DDA3937_RS09755	0.58	-0.4
2,203,040	-		DDA3937_RS09755	0.58	-0.7
2,203,040	-		DDA3937_RS09755	0.58	-0.8
2,203,040	-		DDA3937_RS09755	0.58	-1.1
2,203,040	-		DDA3937_RS09755	0.58	+0.9
2,203,137	+		DDA3937_RS09755	0.71	+0.3
2,203,137	+		DDA3937_RS09755	0.71	+0.5
2,203,137	+		DDA3937_RS09755	0.71	+0.3
2,203,138	-		DDA3937_RS09755	0.71	+1.4
2,203,138	-		DDA3937_RS09755	0.71	-1.2
2,203,138	-		DDA3937_RS09755	0.71	-0.4
2,203,167	+		DDA3937_RS09755	0.75	-1.6
2,203,167	+		DDA3937_RS09755	0.75	-0.9
2,203,167	+		DDA3937_RS09755	0.75	+0.9
2,203,168	-		DDA3937_RS09755	0.75	+0.6
2,203,168	-		DDA3937_RS09755	0.75	-1.4
2,203,186	+		DDA3937_RS09755	0.78	-3.5
2,203,243	+		DDA3937_RS09755	0.86	-0.8
2,203,259	-		DDA3937_RS09755	0.88	+1.1
2,203,371	+				-0.1
2,203,371	+				+0.8
2,203,372	-				-1.8
2,203,372	-				-0.7
2,203,373	+				+0.9
2,203,373	+				-0.5
2,203,373	+				-1.5
2,203,373	+				-1.5
2,203,373	+				-1.7
2,203,374	-				-0.9
2,203,374	-				-2.2
2,203,374	-				-0.7
2,203,374	-				-0.1
2,203,374	-				+1.8
2,203,374	-				+0.1
2,203,374	-				-0.7
2,203,374	-				-0.9
2,203,374	-				-0.4
2,203,374	-				-0.4
2,203,374	-				-1.2
2,203,374	-				+0.3
2,203,375	+				-1.1
2,203,375	+				-1.2
2,203,376	-				+0.1
2,203,376	-				+0.3
2,203,406	-				-0.9
2,203,461	+				-3.4
2,203,461	+				-0.6
2,203,461	+				-1.1
2,203,461	+				-0.1
2,203,462	-				-0.5
2,203,462	-				-1.9
2,203,462	-				-1.0
2,203,462	-				-0.7
2,203,462	-				+0.4
2,203,611	+		DDA3937_RS09760	0.15	-2.7
2,203,611	+		DDA3937_RS09760	0.15	+0.9
2,203,611	+		DDA3937_RS09760	0.15	-1.7
2,203,611	+		DDA3937_RS09760	0.15	+1.5
2,203,611	+		DDA3937_RS09760	0.15	-2.6
2,203,611	+		DDA3937_RS09760	0.15	-0.8
2,203,612	-		DDA3937_RS09760	0.15	-1.1
2,203,612	-		DDA3937_RS09760	0.15	-3.0
2,203,612	-		DDA3937_RS09760	0.15	+0.1
2,203,629	+		DDA3937_RS09760	0.16	-0.9
2,203,651	+		DDA3937_RS09760	0.18	-0.2
2,203,651	+		DDA3937_RS09760	0.18	-0.4
2,203,651	+				+4.9
2,203,652	-		DDA3937_RS09760	0.18	-0.3
2,203,652	-		DDA3937_RS09760	0.18	-2.0
2,203,658	+		DDA3937_RS09760	0.18	-1.4
2,203,658	+		DDA3937_RS09760	0.18	-1.5
2,203,659	-		DDA3937_RS09760	0.18	+0.1
2,203,659	-				+2.7
2,203,674	-		DDA3937_RS09760	0.19	+1.3
2,203,674	-		DDA3937_RS09760	0.19	-3.1
2,203,729	+				+2.9
2,203,730	-		DDA3937_RS09760	0.23	+0.3
2,203,785	+		DDA3937_RS09760	0.26	+0.5
2,203,785	+		DDA3937_RS09760	0.26	-2.1
2,203,785	+		DDA3937_RS09760	0.26	+0.7
2,203,881	+		DDA3937_RS09760	0.32	-0.7
2,203,882	-		DDA3937_RS09760	0.32	-1.8
2,203,882	-		DDA3937_RS09760	0.32	-2.3
2,203,981	-		DDA3937_RS09760	0.38	+0.3
2,204,101	+		DDA3937_RS09760	0.46	-1.2
2,204,101	+		DDA3937_RS09760	0.46	-1.1
2,204,102	-		DDA3937_RS09760	0.46	+1.7
2,204,134	+		DDA3937_RS09760	0.48	-0.7
2,204,149	+		DDA3937_RS09760	0.49	-1.1
2,204,149	+		DDA3937_RS09760	0.49	+0.3
2,204,149	+		DDA3937_RS09760	0.49	-1.9
2,204,149	+		DDA3937_RS09760	0.49	-1.4
2,204,150	-		DDA3937_RS09760	0.49	-1.4
2,204,155	+		DDA3937_RS09760	0.49	-1.7
2,204,304	+		DDA3937_RS09760	0.59	-1.2
2,204,305	-		DDA3937_RS09760	0.59	+0.9